Wall clock time and date at job start Mon Mar 30 2020 03:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46847 * 111.00108 * 2 1 4 4 C 1.53046 * 109.52305 * 174.16161 * 3 2 1 5 5 C 1.53123 * 109.27665 * 59.18005 * 4 3 2 6 6 C 1.53124 * 109.15943 * 302.34465 * 5 4 3 7 7 C 1.46852 * 110.99978 * 235.78949 * 2 1 3 8 8 H 1.08998 * 109.45275 * 65.82719 * 7 2 1 9 9 C 1.52999 * 109.46100 * 305.85757 * 7 2 1 10 10 N 1.46901 * 109.47033 * 175.80078 * 9 7 2 11 11 C 1.48530 * 110.99656 * 302.30283 * 10 9 7 12 12 C 1.54942 * 103.22560 * 200.28002 * 11 10 9 13 13 C 1.54595 * 102.92079 * 37.41267 * 12 11 10 14 14 H 1.09006 * 110.39240 * 96.99942 * 13 12 11 15 15 C 1.50695 * 110.31240 * 219.12608 * 13 12 11 16 16 H 1.07993 * 120.00012 * 118.00081 * 15 13 12 17 17 C 1.37884 * 119.99709 * 298.00772 * 15 13 12 18 18 N 1.31512 * 120.00417 * 4.00827 * 17 15 13 19 19 Si 1.86802 * 119.99710 * 184.29559 * 17 15 13 20 20 H 1.48502 * 109.46613 * 264.72414 * 19 17 15 21 21 H 1.48500 * 109.47188 * 24.72024 * 19 17 15 22 22 H 1.48499 * 109.47366 * 144.72630 * 19 17 15 23 23 C 1.47904 * 110.99826 * 184.90590 * 10 9 7 24 24 H 1.08996 * 109.47344 * 190.67639 * 1 2 3 25 25 H 1.09006 * 109.47020 * 310.67387 * 1 2 3 26 26 H 1.09001 * 109.47148 * 70.67095 * 1 2 3 27 27 H 1.08999 * 109.46652 * 54.14798 * 3 2 1 28 28 H 1.09000 * 109.46405 * 294.17480 * 3 2 1 29 29 H 1.08999 * 109.50207 * 299.23728 * 4 3 2 30 30 H 1.08997 * 109.50166 * 179.11975 * 4 3 2 31 31 H 1.09000 * 109.51922 * 182.44469 * 5 4 3 32 32 H 1.08994 * 109.57682 * 62.28097 * 5 4 3 33 33 H 1.08999 * 109.50284 * 297.71608 * 6 5 4 34 34 H 1.09000 * 109.49935 * 177.60429 * 6 5 4 35 35 H 1.08993 * 109.47303 * 55.79572 * 9 7 2 36 36 H 1.09001 * 109.46729 * 295.79839 * 9 7 2 37 37 H 1.09001 * 110.66995 * 318.71025 * 11 10 9 38 38 H 1.09004 * 110.66914 * 81.67775 * 11 10 9 39 39 H 1.08999 * 110.72348 * 279.05620 * 12 11 10 40 40 H 1.08999 * 110.72188 * 155.77105 * 12 11 10 41 41 H 0.96997 * 120.00116 * 180.27795 * 18 17 15 42 42 H 1.09002 * 109.91570 * 26.49157 * 23 10 9 43 43 H 1.08996 * 109.91653 * 265.19182 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5369 -1.0145 6 6 3.5180 -0.8716 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0659 9 6 1.3889 -2.1755 -1.1204 10 7 1.8366 -2.9133 -2.3092 11 6 1.4609 -2.1953 -3.5540 12 6 1.5156 -3.3052 -4.6337 13 6 0.9673 -4.5422 -3.8859 14 1 -0.0934 -4.6754 -4.0988 15 6 1.7379 -5.7758 -4.2801 16 1 2.2978 -6.3233 -3.5365 17 6 1.7282 -6.2054 -5.5903 18 7 1.1122 -5.4959 -6.5104 19 14 2.5833 -7.7993 -6.0569 20 1 3.9547 -7.5014 -6.5425 21 1 2.6608 -8.6859 -4.8682 22 1 1.8143 -8.4775 -7.1311 23 6 1.1781 -4.2351 -2.3917 24 1 -0.3634 -1.0098 0.1904 25 1 -0.3633 0.6698 0.7795 26 1 -0.3633 0.3402 -0.9697 27 1 1.5634 1.9258 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.7813 0.8567 1.0906 30 1 3.9099 2.3511 0.1310 31 1 5.1997 0.4713 -0.8906 32 1 3.8896 1.0349 -1.9565 33 1 3.7812 -1.3837 -0.0954 34 1 3.9099 -1.4304 -1.8708 35 1 0.3015 -2.1020 -1.1265 36 1 1.7125 -2.7023 -0.2226 37 1 0.4537 -1.7865 -3.4733 38 1 2.1789 -1.4052 -3.7740 39 1 2.5415 -3.4753 -4.9603 40 1 0.8772 -3.0518 -5.4800 41 1 1.1019 -5.8001 -7.4314 42 1 0.2163 -4.2034 -1.8798 43 1 1.8159 -4.9964 -1.9426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:22 Heat of formation + Delta-G solvation = -19.943226 kcal Electronic energy + Delta-G solvation = -19625.405294 eV Core-core repulsion = 16896.926187 eV Total energy + Delta-G solvation = -2728.479107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69882 -39.09929 -35.30262 -34.46987 -33.29490 -30.86631 -30.01951 -27.79973 -26.84650 -25.65742 -23.76892 -22.80169 -21.40796 -21.25005 -20.28145 -18.57300 -17.09305 -16.85534 -16.46088 -16.12610 -15.64748 -15.37542 -15.06036 -14.86951 -14.64663 -14.18916 -13.90228 -13.76672 -13.34916 -13.26430 -12.97672 -12.75835 -12.66319 -12.58176 -12.44568 -12.36377 -11.97870 -11.82200 -11.58187 -11.56235 -11.34089 -11.17378 -10.99394 -10.83566 -10.47841 -9.31000 -9.19890 -8.12280 -6.20869 1.42051 1.42881 1.53870 2.44491 2.78316 3.18813 3.36207 3.78601 3.89006 4.01719 4.11192 4.18820 4.26702 4.33524 4.39183 4.48376 4.51766 4.52289 4.59100 4.65480 4.72745 4.84191 4.86596 4.90166 4.95033 5.01729 5.03688 5.10830 5.15301 5.23693 5.28698 5.36279 5.40901 5.53395 5.55283 5.73907 5.84935 6.07493 6.12104 6.21844 6.30862 6.39322 6.86944 7.45736 8.96971 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039962 B = 0.004652 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.502106 B = 6017.588712 C = 6238.061129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.100 4.100 7 C 0.098 3.902 8 H 0.030 0.970 9 C 0.056 3.944 10 N -0.515 5.515 11 C 0.045 3.955 12 C -0.078 4.078 13 C 0.031 3.969 14 H -0.002 1.002 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.277 1.277 21 H -0.267 1.267 22 H -0.283 1.283 23 C 0.057 3.943 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.018 0.982 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.030 0.970 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 14.200 12.597 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.138 4.138 7 C -0.011 4.011 8 H 0.048 0.952 9 C -0.072 4.072 10 N -0.239 5.239 11 C -0.083 4.083 12 C -0.117 4.117 13 C 0.012 3.988 14 H 0.016 0.984 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.192 1.192 22 H -0.209 1.209 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.568 13.922 12.912 19.161 hybrid contribution -1.052 -0.608 -1.545 1.966 sum 1.516 13.315 11.367 17.572 Atomic orbital electron populations 1.22441 0.87089 1.02728 1.00395 1.61917 1.07976 1.14302 1.42904 1.22183 0.96302 0.88132 1.00650 1.21581 0.93830 1.00758 0.98775 1.21612 1.00466 0.95173 0.98649 1.21462 0.92943 0.97366 1.02069 1.21499 0.96028 0.92377 0.91169 0.95212 1.22347 0.96837 0.94217 0.93799 1.64673 1.54906 1.02607 1.01732 1.23180 0.97841 0.96603 0.90632 1.22108 0.99296 0.94500 0.95817 1.19485 0.94482 0.94279 0.90587 0.98385 1.21515 1.30202 1.10510 0.94138 0.92777 1.25751 0.96255 1.00109 0.96567 1.70099 1.44672 1.39427 1.01709 0.85587 0.78374 0.80022 0.77946 1.20332 1.19158 1.20895 1.22829 0.95584 0.90936 0.97686 0.91590 0.89675 0.96328 0.89247 0.95505 0.91264 0.89840 0.90922 0.92776 0.91875 0.92075 0.95044 0.90516 0.94899 0.90365 0.94445 0.94273 0.93119 0.95128 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.89 127.69 1.13 1.58 16 2 N -0.55 -12.62 4.75 -897.18 -4.26 -16.88 16 3 C 0.05 1.03 5.46 86.33 0.47 1.50 16 4 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 5 C -0.12 -2.51 6.00 30.68 0.18 -2.33 16 6 C -0.10 -2.63 5.24 30.65 0.16 -2.47 16 7 C 0.10 2.65 1.69 44.94 0.08 2.73 16 8 H 0.03 0.88 6.66 -2.39 -0.02 0.87 16 9 C 0.06 1.76 3.97 86.30 0.34 2.10 16 10 N -0.51 -19.59 4.79 -883.01 -4.23 -23.82 16 11 C 0.05 1.75 5.31 86.65 0.46 2.21 16 12 C -0.08 -3.82 5.52 31.80 0.18 -3.65 16 13 C 0.03 1.58 2.95 -10.66 -0.03 1.55 16 14 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 15 C -0.53 -29.59 8.40 25.60 0.21 -29.37 16 16 H 0.05 3.01 7.35 -2.91 -0.02 2.99 16 17 C 0.01 0.67 5.36 84.66 0.45 1.12 16 18 N -0.92 -54.06 12.32 21.45 0.26 -53.80 16 19 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.06 2.47 6.35 86.45 0.55 3.02 16 24 H 0.07 1.45 6.52 -2.39 -0.02 1.43 16 25 H 0.08 1.40 7.97 -2.38 -0.02 1.38 16 26 H 0.02 0.40 8.12 -2.39 -0.02 0.38 16 27 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 35 H 0.03 0.98 6.04 -2.39 -0.01 0.96 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 1.23 8.02 -2.39 -0.02 1.21 16 38 H 0.08 2.80 7.55 -2.38 -0.02 2.78 16 39 H 0.04 1.97 7.86 -2.39 -0.02 1.95 16 40 H 0.04 2.01 8.01 -2.39 -0.02 1.99 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.03 1.23 7.66 -2.39 -0.02 1.21 16 43 H 0.06 2.86 7.39 -2.39 -0.02 2.84 16 Total: -1.00 -60.28 322.30 -0.88 -61.16 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.94 Total: 10.73 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.38 Total: -23.75 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -8.22 Total: -94.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.28 -0.88 -61.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -60.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds