Wall clock time and date at job start Mon Mar 30 2020 03:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46849 * 110.99873 * 2 1 4 4 C 1.53035 * 109.52291 * 185.83557 * 3 2 1 5 5 C 1.53114 * 109.28003 * 300.82126 * 4 3 2 6 6 C 1.53117 * 109.16033 * 57.65305 * 5 4 3 7 7 C 1.46849 * 111.00044 * 124.20628 * 2 1 3 8 8 H 1.09004 * 109.46081 * 294.17266 * 7 2 1 9 9 C 1.53000 * 109.46104 * 54.14683 * 7 2 1 10 10 N 1.46895 * 109.47019 * 183.34461 * 9 7 2 11 11 C 1.47849 * 111.00315 * 74.69959 * 10 9 7 12 12 C 1.55106 * 104.90799 * 146.24030 * 11 10 9 13 13 C 1.55146 * 101.55994 * 323.15633 * 12 11 10 14 14 H 1.09005 * 110.70448 * 276.96978 * 13 12 11 15 15 C 1.50698 * 110.70585 * 153.90976 * 13 12 11 16 16 H 1.08002 * 119.99744 * 243.52968 * 15 13 12 17 17 C 1.37877 * 120.00277 * 63.80698 * 15 13 12 18 18 N 1.31522 * 119.99738 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00095 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47556 * 119.99965 * 19 17 15 22 22 H 1.48505 * 109.47128 * 239.99937 * 19 17 15 23 23 C 1.47444 * 110.99889 * 195.53664 * 10 9 7 24 24 H 1.09008 * 109.47466 * 289.32968 * 1 2 3 25 25 H 1.09002 * 109.47161 * 49.32721 * 1 2 3 26 26 H 1.08994 * 109.47268 * 169.32704 * 1 2 3 27 27 H 1.09006 * 109.46350 * 305.85260 * 3 2 1 28 28 H 1.08999 * 109.46441 * 65.83167 * 3 2 1 29 29 H 1.09002 * 109.49947 * 60.76515 * 4 3 2 30 30 H 1.09000 * 109.50419 * 180.87723 * 4 3 2 31 31 H 1.09001 * 109.52291 * 177.55968 * 5 4 3 32 32 H 1.09005 * 109.52456 * 297.68325 * 5 4 3 33 33 H 1.09008 * 109.50223 * 182.40153 * 6 5 4 34 34 H 1.08998 * 109.50287 * 62.28701 * 6 5 4 35 35 H 1.09002 * 109.47375 * 63.34155 * 9 7 2 36 36 H 1.09005 * 109.47183 * 303.34202 * 9 7 2 37 37 H 1.09004 * 110.36733 * 265.18993 * 11 10 9 38 38 H 1.08999 * 110.37066 * 27.41773 * 11 10 9 39 39 H 1.09003 * 111.14550 * 205.05023 * 12 11 10 40 40 H 1.08999 * 110.92658 * 81.16566 * 12 11 10 41 41 H 0.96996 * 119.99217 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.88769 * 117.33465 * 23 10 9 43 43 H 1.09000 * 110.02482 * 356.22823 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 -0.1467 5 6 4.1187 0.5371 1.0145 6 6 3.5180 -0.8713 1.0209 7 6 1.9952 -0.7707 1.1338 8 1 1.7325 -0.2707 2.0660 9 6 1.3891 -2.1755 1.1205 10 7 1.8530 -2.9201 2.2986 11 6 1.1680 -2.4545 3.5234 12 6 1.0264 -3.7211 4.4074 13 6 0.7443 -4.8135 3.3424 14 1 -0.3124 -4.8278 3.0755 15 6 1.1852 -6.1668 3.8377 16 1 1.9749 -6.6978 3.3269 17 6 0.5765 -6.7297 4.9393 18 7 -0.3886 -6.0852 5.5583 19 14 1.1224 -8.4074 5.5527 20 1 2.2167 -8.9185 4.6886 21 1 1.6093 -8.2892 6.9506 22 1 -0.0251 -9.3490 5.5062 23 6 1.6042 -4.3650 2.1422 24 1 -0.3634 0.3402 0.9698 25 1 -0.3633 0.6698 -0.7794 26 1 -0.3633 -1.0098 -0.1903 27 1 1.5633 1.9258 -0.8330 28 1 1.7325 1.8608 0.9376 29 1 3.7813 0.8568 -1.0905 30 1 3.9098 2.3513 -0.1310 31 1 5.1996 0.4715 0.8906 32 1 3.8895 1.0362 1.9561 33 1 3.9098 -1.4302 1.8709 34 1 3.7813 -1.3835 0.0955 35 1 1.7003 -2.6969 0.2153 36 1 0.3017 -2.1022 1.1420 37 1 1.7700 -1.7012 4.0317 38 1 0.1851 -2.0520 3.2786 39 1 0.1900 -3.6258 5.0999 40 1 1.9530 -3.9278 4.9427 41 1 -0.8165 -6.4811 6.3336 42 1 2.5505 -4.9062 2.1411 43 1 1.0688 -4.5529 1.2115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:25 Heat of formation + Delta-G solvation = -4.721158 kcal Electronic energy + Delta-G solvation = -19538.375959 eV Core-core repulsion = 16810.556930 eV Total energy + Delta-G solvation = -2727.819029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44280 -37.61822 -33.65824 -33.28964 -31.74476 -29.35703 -28.22221 -26.76573 -25.41865 -23.91438 -22.77833 -21.29873 -20.09124 -19.47785 -19.20958 -16.51669 -15.77503 -15.63374 -14.82430 -14.64814 -14.41189 -14.12688 -13.81549 -13.58283 -13.10877 -12.79557 -12.48393 -12.34084 -12.18523 -11.79062 -11.66791 -11.36238 -11.28125 -11.03345 -10.76442 -10.68023 -10.57799 -10.51898 -10.27906 -10.20292 -9.95896 -9.62299 -9.24637 -8.83603 -8.39341 -8.28006 -7.54789 -6.01866 -4.04230 3.30238 3.38357 3.42662 3.86021 4.44266 4.71062 4.86661 4.92125 4.99844 5.11995 5.31353 5.34034 5.42329 5.46604 5.54782 5.59352 5.70846 5.77106 5.84588 5.91846 5.93256 5.95236 6.06052 6.14027 6.21028 6.21797 6.30263 6.39396 6.39610 6.56025 6.63525 6.89612 7.09484 7.17524 7.18799 7.21510 7.61528 7.64759 7.85733 7.92422 8.01220 8.42749 8.97766 9.59868 11.08176 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.004442 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.703894 B = 6301.334725 C = 6513.449218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.101 4.101 7 C 0.094 3.906 8 H 0.038 0.962 9 C 0.057 3.943 10 N -0.529 5.529 11 C 0.037 3.963 12 C -0.102 4.102 13 C 0.034 3.966 14 H 0.027 0.973 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.050 3.950 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.259 0.741 42 H 0.069 0.931 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 13.996 -9.326 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.014 4.014 8 H 0.056 0.944 9 C -0.072 4.072 10 N -0.253 5.253 11 C -0.090 4.090 12 C -0.141 4.141 13 C 0.015 3.985 14 H 0.045 0.955 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.077 4.077 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.810 13.838 -9.575 17.501 hybrid contribution -1.068 -0.575 1.084 1.627 sum 3.742 13.263 -8.490 16.186 Atomic orbital electron populations 1.22402 0.87719 1.02575 0.99904 1.61909 1.07324 1.13157 1.44182 1.22059 0.95727 0.89280 0.99961 1.21587 0.94423 0.99769 0.99623 1.21628 0.99783 0.96700 0.98004 1.21496 0.93380 0.95879 1.03106 1.21576 0.95611 0.93622 0.90603 0.94375 1.22328 0.96671 0.93485 0.94682 1.63474 1.55762 1.04472 1.01623 1.23193 0.94973 0.99035 0.91819 1.22640 1.01138 0.92314 0.97990 1.19812 0.94565 0.94312 0.89858 0.95477 1.21127 1.19213 1.01989 1.12419 0.92386 1.24981 0.94850 0.97485 0.96653 1.69976 1.24368 1.37994 1.20641 0.86550 0.78548 0.84297 0.78699 1.19714 1.21057 1.21128 1.22977 1.00085 0.85971 0.98704 0.95780 0.91846 0.90928 0.91144 0.95299 0.91219 0.92031 0.92017 0.92595 0.89955 0.91681 0.90911 0.95009 0.92379 0.95344 0.91220 0.92510 0.93156 0.91240 0.94931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.89 60.06 0.53 0.80 16 2 N -0.54 -6.91 4.75 -234.93 -1.12 -8.03 16 3 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 4 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 5 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 6 C -0.10 -1.35 5.23 -26.66 -0.14 -1.49 16 7 C 0.09 1.34 1.94 -67.73 -0.13 1.21 16 8 H 0.04 0.59 7.61 -51.93 -0.40 0.20 16 9 C 0.06 0.93 3.77 -3.83 -0.01 0.92 16 10 N -0.53 -10.01 4.52 -231.11 -1.04 -11.06 16 11 C 0.04 0.73 6.02 -2.19 -0.01 0.72 16 12 C -0.10 -2.40 5.86 -24.48 -0.14 -2.55 16 13 C 0.03 0.85 2.82 -89.95 -0.25 0.59 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.51 -13.99 8.48 -34.44 -0.29 -14.28 16 16 H 0.06 1.58 7.55 -52.49 -0.40 1.18 16 17 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 18 N -0.89 -25.62 12.28 55.43 0.68 -24.94 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.05 1.06 6.42 -2.84 -0.02 1.04 16 24 H 0.02 0.29 8.12 -51.92 -0.42 -0.13 16 25 H 0.06 0.63 7.97 -51.93 -0.41 0.22 16 26 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 27 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.23 7.73 -51.92 -0.40 0.83 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 36 H 0.03 0.53 5.82 -51.93 -0.30 0.23 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.55 7.53 -51.93 -0.39 0.16 16 39 H 0.07 1.75 7.64 -51.93 -0.40 1.36 16 40 H 0.06 1.39 8.04 -51.93 -0.42 0.98 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.53 7.65 -51.93 -0.40 1.13 16 43 H 0.03 0.66 7.48 -51.93 -0.39 0.27 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -27.88 323.73 -10.53 -38.41 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.00 Total: -1.89 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.91 Total: -13.68 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.48 Total: -44.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.88 -10.53 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.690 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds