Wall clock time and date at job start Mon Mar 30 2020 03:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46841 * 111.00212 * 2 1 4 4 C 1.53042 * 109.51608 * 174.16546 * 3 2 1 5 5 C 1.53103 * 109.28711 * 59.18907 * 4 3 2 6 6 C 1.53127 * 109.15246 * 302.33992 * 5 4 3 7 7 C 1.46853 * 110.99732 * 235.79114 * 2 1 3 8 8 H 1.09008 * 109.45889 * 65.82490 * 7 2 1 9 9 C 1.52998 * 109.46430 * 305.84920 * 7 2 1 10 10 N 1.46897 * 109.47051 * 180.67879 * 9 7 2 11 11 C 1.47901 * 111.00146 * 82.01426 * 10 9 7 12 12 C 1.53988 * 107.06122 * 214.15746 * 11 10 9 13 13 C 1.54592 * 105.13965 * 1.22210 * 12 11 10 14 14 H 1.09005 * 110.72773 * 263.60073 * 13 12 11 15 15 C 1.50704 * 110.72376 * 140.49563 * 13 12 11 16 16 H 1.08002 * 119.99897 * 245.27241 * 15 13 12 17 17 C 1.37874 * 119.99927 * 65.27967 * 15 13 12 18 18 N 1.31518 * 120.00385 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47118 * 59.99631 * 19 17 15 21 21 H 1.48497 * 109.47229 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47326 * 299.99726 * 19 17 15 23 23 C 1.48537 * 111.00256 * 324.61805 * 10 9 7 24 24 H 1.08997 * 109.47135 * 63.26092 * 1 2 3 25 25 H 1.08994 * 109.46979 * 183.26436 * 1 2 3 26 26 H 1.09003 * 109.46459 * 303.26493 * 1 2 3 27 27 H 1.08996 * 109.46613 * 294.17971 * 3 2 1 28 28 H 1.09002 * 109.46472 * 54.16141 * 3 2 1 29 29 H 1.08993 * 109.50388 * 179.12002 * 4 3 2 30 30 H 1.09001 * 109.50275 * 299.24029 * 4 3 2 31 31 H 1.08999 * 109.52508 * 182.43619 * 5 4 3 32 32 H 1.08997 * 109.57656 * 62.27433 * 5 4 3 33 33 H 1.09000 * 109.50045 * 297.71263 * 6 5 4 34 34 H 1.08998 * 109.49793 * 177.59747 * 6 5 4 35 35 H 1.08994 * 109.46877 * 300.67938 * 9 7 2 36 36 H 1.08997 * 109.47283 * 60.67962 * 9 7 2 37 37 H 1.09005 * 109.91695 * 333.51036 * 11 10 9 38 38 H 1.09001 * 109.92063 * 94.79757 * 11 10 9 39 39 H 1.08993 * 110.31025 * 120.14173 * 12 11 10 40 40 H 1.09004 * 110.30840 * 242.30624 * 12 11 10 41 41 H 0.96989 * 120.00193 * 180.02562 * 18 17 15 42 42 H 1.09004 * 110.66545 * 278.15413 * 23 10 9 43 43 H 1.08995 * 110.66374 * 41.28373 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3338 0.1466 5 6 4.1189 0.5369 -1.0145 6 6 3.5181 -0.8716 -1.0210 7 6 1.9953 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0661 9 6 1.3892 -2.1756 -1.1204 10 7 1.9279 -2.9520 -2.2451 11 6 3.2539 -3.5164 -1.9127 12 6 4.0820 -3.5192 -3.2110 13 6 3.1569 -2.8961 -4.2814 14 1 2.6496 -3.6736 -4.8528 15 6 3.9365 -1.9874 -5.1965 16 1 3.7320 -0.9269 -5.2069 17 6 4.9108 -2.5097 -6.0204 18 7 5.1601 -3.8010 -6.0075 19 14 5.8767 -1.3834 -7.1552 20 1 6.5971 -0.3666 -6.3476 21 1 6.8575 -2.1847 -7.9306 22 1 4.9438 -0.7034 -8.0893 23 6 2.1420 -2.0880 -3.4343 24 1 -0.3633 0.4624 -0.9177 25 1 -0.3633 -1.0260 0.0585 26 1 -0.3632 0.5637 0.8593 27 1 1.7326 1.8608 -0.9375 28 1 1.5638 1.9256 0.8331 29 1 3.9102 2.3508 0.1309 30 1 3.7815 0.8563 1.0905 31 1 5.1998 0.4713 -0.8906 32 1 3.8897 1.0351 -1.9565 33 1 3.7813 -1.3837 -0.0955 34 1 3.9098 -1.4303 -1.8710 35 1 1.6414 -2.6711 -0.1830 36 1 0.3056 -2.1047 -1.2138 37 1 3.7435 -2.8966 -1.1614 38 1 3.1416 -4.5351 -1.5417 39 1 4.9800 -2.9138 -3.0883 40 1 4.3476 -4.5395 -3.4881 41 1 5.8457 -4.1684 -6.5869 42 1 1.2095 -1.9482 -3.9811 43 1 2.5648 -1.1273 -3.1406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:28 Heat of formation + Delta-G solvation = 17.499969 kcal Electronic energy + Delta-G solvation = -20321.111816 eV Core-core repulsion = 17594.256368 eV Total energy + Delta-G solvation = -2726.855448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03922 -37.41471 -33.64555 -33.28202 -31.43786 -29.41965 -28.30398 -26.59894 -25.54902 -24.06350 -22.78163 -21.47050 -19.99782 -19.50548 -18.88345 -16.61146 -15.82272 -15.33613 -14.86788 -14.56597 -14.43397 -14.20032 -13.94245 -13.41607 -13.28624 -12.91150 -12.36029 -12.08183 -12.02683 -11.70427 -11.62682 -11.25193 -11.12844 -11.03004 -10.68876 -10.58820 -10.55157 -10.45487 -10.31098 -10.23029 -9.80139 -9.59641 -9.18387 -8.76058 -8.38244 -8.21036 -7.52944 -6.01133 -4.04494 3.30845 3.36130 3.38104 3.96351 4.42433 4.81085 4.89700 4.99983 5.05615 5.16798 5.32216 5.39556 5.45719 5.50122 5.58384 5.65111 5.72983 5.82774 5.88613 5.94023 5.99282 6.03143 6.11140 6.16890 6.21275 6.33000 6.37601 6.43311 6.49698 6.58385 6.64877 6.90491 7.13509 7.17604 7.19857 7.20845 7.62162 7.68777 7.78239 7.90790 8.05889 8.46041 8.98290 9.59656 11.08766 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.006724 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.088836 B = 4163.473593 C = 4725.833487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.128 4.128 7 C 0.053 3.947 8 H 0.052 0.948 9 C 0.051 3.949 10 N -0.516 5.516 11 C 0.013 3.987 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.036 0.964 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.024 3.976 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 7.375 11.938 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.166 4.166 7 C -0.056 4.056 8 H 0.070 0.930 9 C -0.078 4.078 10 N -0.239 5.239 11 C -0.114 4.114 12 C -0.143 4.143 13 C 0.035 3.965 14 H 0.054 0.946 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.103 4.103 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.288 6.572 12.178 14.814 hybrid contribution 0.839 1.660 -1.176 2.200 sum -4.449 8.232 11.002 14.443 Atomic orbital electron populations 1.22408 0.87836 1.02412 1.00004 1.61958 1.07181 1.13184 1.43960 1.22062 0.95789 0.89362 0.99933 1.21582 0.94384 0.99828 0.99517 1.21581 0.99947 0.96255 0.98164 1.22160 0.93860 0.97187 1.03355 1.22421 0.95773 0.95891 0.91526 0.93032 1.22373 0.99194 0.90848 0.95379 1.65014 1.24281 1.30481 1.04090 1.23389 0.89704 0.98756 0.99576 1.22347 0.97944 1.01342 0.92679 1.19513 0.90997 0.94180 0.91836 0.94589 1.21031 1.18883 0.93700 1.21773 0.92845 1.24949 0.97066 0.94896 0.96798 1.69960 1.32440 1.11106 1.38978 0.86734 0.79901 0.80778 0.81029 1.20348 1.21297 1.20305 1.23664 0.99636 0.96027 0.90939 0.95882 0.90799 0.91873 0.95206 0.91250 0.92005 0.91405 0.91834 0.92174 0.91632 0.88286 0.91149 0.91353 0.93128 0.92430 0.92831 0.92291 0.92984 0.92376 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.08 60.07 0.55 0.80 16 2 N -0.54 -7.24 4.75 -234.92 -1.12 -8.35 16 3 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 4 C -0.12 -1.39 6.09 -26.66 -0.16 -1.55 16 5 C -0.12 -1.74 6.00 -26.61 -0.16 -1.90 16 6 C -0.13 -2.04 3.28 -26.65 -0.09 -2.13 16 7 C 0.05 0.82 1.38 -67.72 -0.09 0.72 16 8 H 0.05 0.89 6.16 -51.92 -0.32 0.57 16 9 C 0.05 0.82 4.91 -3.83 -0.02 0.80 16 10 N -0.52 -9.84 5.54 -230.46 -1.28 -11.11 16 11 C 0.01 0.25 5.68 -2.76 -0.02 0.24 16 12 C -0.10 -2.41 5.16 -25.38 -0.13 -2.54 16 13 C 0.05 1.34 2.91 -89.91 -0.26 1.08 16 14 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.52 -13.94 8.40 -34.44 -0.29 -14.23 16 16 H 0.05 1.42 7.78 -52.49 -0.41 1.02 16 17 C 0.07 1.79 5.35 -17.82 -0.10 1.69 16 18 N -0.89 -25.41 12.71 55.43 0.70 -24.70 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.02 0.51 4.95 -1.90 -0.01 0.50 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 26 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.02 7.50 -51.93 -0.39 0.63 16 34 H 0.10 1.85 3.63 -51.93 -0.19 1.66 16 35 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 36 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 37 H 0.05 0.90 4.33 -51.93 -0.23 0.68 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 1.29 7.54 -51.93 -0.39 0.90 16 40 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.08 4.03 -51.93 -0.21 0.87 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -27.69 309.83 -10.23 -37.93 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.40 Total: 1.29 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.80 Total: -15.85 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.69 Total: -44.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.69 -10.23 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.428 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds