Wall clock time and date at job start Mon Mar 30 2020 03:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46841 * 111.00212 * 2 1 4 4 C 1.53042 * 109.51608 * 174.16546 * 3 2 1 5 5 C 1.53103 * 109.28711 * 59.18907 * 4 3 2 6 6 C 1.53127 * 109.15246 * 302.33992 * 5 4 3 7 7 C 1.46853 * 110.99732 * 235.79114 * 2 1 3 8 8 H 1.09008 * 109.45889 * 65.82490 * 7 2 1 9 9 C 1.52998 * 109.46430 * 305.84920 * 7 2 1 10 10 N 1.46897 * 109.47051 * 180.67879 * 9 7 2 11 11 C 1.47901 * 111.00146 * 82.01426 * 10 9 7 12 12 C 1.53988 * 107.06122 * 214.15746 * 11 10 9 13 13 C 1.54592 * 105.13965 * 1.22210 * 12 11 10 14 14 H 1.09005 * 110.72773 * 263.60073 * 13 12 11 15 15 C 1.50704 * 110.72376 * 140.49563 * 13 12 11 16 16 H 1.08002 * 119.99897 * 245.27241 * 15 13 12 17 17 C 1.37874 * 119.99927 * 65.27967 * 15 13 12 18 18 N 1.31518 * 120.00385 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47118 * 59.99631 * 19 17 15 21 21 H 1.48497 * 109.47229 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47326 * 299.99726 * 19 17 15 23 23 C 1.48537 * 111.00256 * 324.61805 * 10 9 7 24 24 H 1.08997 * 109.47135 * 63.26092 * 1 2 3 25 25 H 1.08994 * 109.46979 * 183.26436 * 1 2 3 26 26 H 1.09003 * 109.46459 * 303.26493 * 1 2 3 27 27 H 1.08996 * 109.46613 * 294.17971 * 3 2 1 28 28 H 1.09002 * 109.46472 * 54.16141 * 3 2 1 29 29 H 1.08993 * 109.50388 * 179.12002 * 4 3 2 30 30 H 1.09001 * 109.50275 * 299.24029 * 4 3 2 31 31 H 1.08999 * 109.52508 * 182.43619 * 5 4 3 32 32 H 1.08997 * 109.57656 * 62.27433 * 5 4 3 33 33 H 1.09000 * 109.50045 * 297.71263 * 6 5 4 34 34 H 1.08998 * 109.49793 * 177.59747 * 6 5 4 35 35 H 1.08994 * 109.46877 * 300.67938 * 9 7 2 36 36 H 1.08997 * 109.47283 * 60.67962 * 9 7 2 37 37 H 1.09005 * 109.91695 * 333.51036 * 11 10 9 38 38 H 1.09001 * 109.92063 * 94.79757 * 11 10 9 39 39 H 1.08993 * 110.31025 * 120.14173 * 12 11 10 40 40 H 1.09004 * 110.30840 * 242.30624 * 12 11 10 41 41 H 0.96989 * 120.00193 * 180.02562 * 18 17 15 42 42 H 1.09004 * 110.66545 * 278.15413 * 23 10 9 43 43 H 1.08995 * 110.66374 * 41.28373 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3338 0.1466 5 6 4.1189 0.5369 -1.0145 6 6 3.5181 -0.8716 -1.0210 7 6 1.9953 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0661 9 6 1.3892 -2.1756 -1.1204 10 7 1.9279 -2.9520 -2.2451 11 6 3.2539 -3.5164 -1.9127 12 6 4.0820 -3.5192 -3.2110 13 6 3.1569 -2.8961 -4.2814 14 1 2.6496 -3.6736 -4.8528 15 6 3.9365 -1.9874 -5.1965 16 1 3.7320 -0.9269 -5.2069 17 6 4.9108 -2.5097 -6.0204 18 7 5.1601 -3.8010 -6.0075 19 14 5.8767 -1.3834 -7.1552 20 1 6.5971 -0.3666 -6.3476 21 1 6.8575 -2.1847 -7.9306 22 1 4.9438 -0.7034 -8.0893 23 6 2.1420 -2.0880 -3.4343 24 1 -0.3633 0.4624 -0.9177 25 1 -0.3633 -1.0260 0.0585 26 1 -0.3632 0.5637 0.8593 27 1 1.7326 1.8608 -0.9375 28 1 1.5638 1.9256 0.8331 29 1 3.9102 2.3508 0.1309 30 1 3.7815 0.8563 1.0905 31 1 5.1998 0.4713 -0.8906 32 1 3.8897 1.0351 -1.9565 33 1 3.7813 -1.3837 -0.0955 34 1 3.9098 -1.4303 -1.8710 35 1 1.6414 -2.6711 -0.1830 36 1 0.3056 -2.1047 -1.2138 37 1 3.7435 -2.8966 -1.1614 38 1 3.1416 -4.5351 -1.5417 39 1 4.9800 -2.9138 -3.0883 40 1 4.3476 -4.5395 -3.4881 41 1 5.8457 -4.1684 -6.5869 42 1 1.2095 -1.9482 -3.9811 43 1 2.5648 -1.1273 -3.1406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:27 Heat of formation + Delta-G solvation = -0.776757 kcal Electronic energy + Delta-G solvation = -20321.904355 eV Core-core repulsion = 17594.256368 eV Total energy + Delta-G solvation = -2727.647987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38301 -38.81858 -35.30001 -34.58422 -33.08663 -30.87524 -30.05509 -27.65438 -27.16197 -25.79921 -23.87146 -22.82369 -21.65495 -20.98142 -20.28469 -18.51995 -17.20990 -16.88080 -16.37979 -16.08622 -15.80329 -15.45221 -15.16161 -14.85606 -14.70907 -14.09058 -13.84115 -13.62796 -13.41030 -13.22004 -12.98728 -12.74811 -12.60394 -12.55994 -12.46499 -12.25710 -12.05542 -11.75685 -11.72597 -11.46269 -11.41116 -11.09671 -11.03164 -10.79686 -10.49270 -9.32068 -9.02810 -8.13387 -6.23628 1.40314 1.41236 1.48955 2.41633 2.89249 3.17866 3.34284 3.78286 3.81909 3.96024 4.11132 4.15099 4.25999 4.32244 4.34996 4.52652 4.53991 4.58457 4.63689 4.66867 4.70981 4.82678 4.88534 4.91291 4.96520 5.01767 5.06169 5.08086 5.09289 5.22429 5.24831 5.31213 5.35246 5.44592 5.60582 5.81129 5.87108 6.01837 6.07873 6.17799 6.33651 6.42502 6.86419 7.44052 8.96198 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.006724 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.088836 B = 4163.473593 C = 4725.833487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.127 4.127 7 C 0.063 3.937 8 H 0.030 0.970 9 C 0.054 3.946 10 N -0.522 5.522 11 C 0.025 3.975 12 C -0.093 4.093 13 C 0.045 3.955 14 H -0.004 1.004 15 C -0.529 4.529 16 H 0.053 0.947 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.041 3.959 24 H 0.018 0.982 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.022 0.978 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 9.032 13.674 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.074 4.074 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.164 4.164 7 C -0.047 4.047 8 H 0.048 0.952 9 C -0.074 4.074 10 N -0.245 5.245 11 C -0.102 4.102 12 C -0.131 4.131 13 C 0.026 3.974 14 H 0.015 0.985 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.086 4.086 24 H 0.037 0.963 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.759 8.242 13.928 17.178 hybrid contribution 0.942 1.139 -1.698 2.251 sum -4.818 9.382 12.230 16.149 Atomic orbital electron populations 1.22492 0.86539 1.02996 1.00777 1.61985 1.08379 1.13789 1.42315 1.22165 0.95931 0.88754 1.00516 1.21553 0.94238 1.00487 0.98368 1.21581 1.00276 0.95547 0.98655 1.22054 0.94332 0.97918 1.02094 1.22183 0.95391 0.95621 0.91507 0.95225 1.22425 0.99744 0.90913 0.94341 1.64976 1.23938 1.30857 1.04721 1.23271 0.89358 0.99911 0.97686 1.22095 0.97629 0.99059 0.94350 1.19455 0.92046 0.93592 0.92322 0.98531 1.21350 1.19160 0.93955 1.22322 0.92897 1.25727 0.98077 0.96243 0.98327 1.70093 1.33056 1.12752 1.39831 0.85721 0.78534 0.78980 0.79113 1.19490 1.20983 1.19667 1.23384 0.98239 0.95802 0.91176 0.96312 0.90544 0.89699 0.95995 0.88881 0.90110 0.90905 0.91565 0.93660 0.91053 0.91422 0.90002 0.90081 0.91256 0.91317 0.94435 0.94849 0.93038 0.92591 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.08 127.69 1.16 1.56 16 2 N -0.54 -13.03 4.75 -897.17 -4.26 -17.29 16 3 C 0.05 1.17 5.46 86.33 0.47 1.64 16 4 C -0.11 -2.33 6.09 30.64 0.19 -2.14 16 5 C -0.12 -3.36 6.00 30.67 0.18 -3.17 16 6 C -0.13 -3.88 3.28 30.65 0.10 -3.78 16 7 C 0.06 1.83 1.38 44.93 0.06 1.89 16 8 H 0.03 1.01 6.16 -2.38 -0.01 0.99 16 9 C 0.05 1.63 4.91 86.30 0.42 2.06 16 10 N -0.52 -19.58 5.54 -883.04 -4.89 -24.47 16 11 C 0.03 0.96 5.68 86.44 0.49 1.45 16 12 C -0.09 -4.43 5.16 31.47 0.16 -4.27 16 13 C 0.04 2.33 2.91 -10.34 -0.03 2.30 16 14 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 15 C -0.53 -29.39 8.40 25.60 0.21 -29.18 16 16 H 0.05 2.87 7.78 -2.91 -0.02 2.85 16 17 C 0.02 0.86 5.35 84.65 0.45 1.32 16 18 N -0.92 -54.17 12.71 21.45 0.27 -53.89 16 19 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.04 1.76 4.95 86.65 0.43 2.19 16 24 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.08 1.50 6.17 -2.39 -0.01 1.48 16 26 H 0.08 1.36 8.11 -2.39 -0.02 1.34 16 27 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 2.09 7.50 -2.39 -0.02 2.07 16 34 H 0.07 2.51 3.63 -2.39 -0.01 2.50 16 35 H 0.08 2.31 7.91 -2.39 -0.02 2.29 16 36 H 0.08 2.25 6.35 -2.39 -0.02 2.24 16 37 H 0.07 2.41 4.33 -2.38 -0.01 2.40 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.87 7.54 -2.39 -0.02 1.85 16 40 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.26 14.66 8.31 -92.72 -0.77 13.89 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.38 4.03 -2.39 -0.01 2.37 16 Total: -1.00 -60.35 309.83 -1.57 -61.92 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.02 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.31 Total: -28.14 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -8.87 Total: -95.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.35 -1.57 -61.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -60.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds