Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47901 * 111.00263 * 2 1 4 4 C 1.53997 * 107.06164 * 145.84324 * 3 2 1 5 5 C 1.54598 * 105.13717 * 358.77321 * 4 3 2 6 6 H 1.08995 * 110.72428 * 96.58237 * 5 4 3 7 7 C 1.53005 * 110.72407 * 219.68466 * 5 4 3 8 8 N 1.46897 * 109.46779 * 182.14533 * 7 5 4 9 9 C 1.46846 * 111.00195 * 66.04155 * 8 7 5 10 10 C 1.53038 * 109.52507 * 185.83312 * 9 8 7 11 11 C 1.53113 * 109.28179 * 300.82193 * 10 9 8 12 12 C 1.50697 * 109.52641 * 177.55651 * 11 10 9 13 13 H 1.08004 * 119.99850 * 334.21596 * 12 11 10 14 14 C 1.37877 * 120.00178 * 154.21873 * 12 11 10 15 15 N 1.31507 * 120.00153 * 6.65953 * 14 12 11 16 16 Si 1.86804 * 119.99806 * 186.66984 * 14 12 11 17 17 H 1.48506 * 109.46868 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46761 * 299.99240 * 16 14 12 19 19 H 1.48497 * 109.47373 * 59.99320 * 16 14 12 20 20 C 1.53125 * 109.16025 * 57.65369 * 11 10 9 21 21 C 1.46846 * 110.99699 * 190.24780 * 8 7 5 22 22 C 1.48541 * 110.99888 * 117.39224 * 2 1 3 23 23 H 1.09005 * 109.46879 * 60.12583 * 1 2 3 24 24 H 1.08995 * 109.47058 * 180.12715 * 1 2 3 25 25 H 1.09001 * 109.47156 * 300.12932 * 1 2 3 26 26 H 1.08997 * 109.91764 * 26.48926 * 3 2 1 27 27 H 1.09002 * 110.08227 * 265.28908 * 3 2 1 28 28 H 1.09006 * 110.30472 * 239.86080 * 4 3 2 29 29 H 1.08997 * 110.39589 * 117.73354 * 4 3 2 30 30 H 1.09002 * 109.46878 * 62.14406 * 7 5 4 31 31 H 1.08993 * 109.47011 * 302.14526 * 7 5 4 32 32 H 1.09005 * 109.46117 * 65.82315 * 9 8 7 33 33 H 1.08996 * 109.46181 * 305.84939 * 9 8 7 34 34 H 1.08996 * 109.50549 * 180.87631 * 10 9 8 35 35 H 1.09009 * 109.53122 * 60.78175 * 10 9 8 36 36 H 1.08998 * 109.52437 * 297.68619 * 11 10 9 37 37 H 0.97002 * 119.99733 * 355.13130 * 15 14 12 38 38 H 1.08994 * 109.50781 * 62.28512 * 20 11 10 39 39 H 1.08999 * 109.50368 * 182.41152 * 20 11 10 40 40 H 1.08998 * 109.46666 * 294.18154 * 21 8 7 41 41 H 1.09004 * 109.46345 * 54.14305 * 21 8 7 42 42 H 1.09004 * 110.66178 * 81.84488 * 22 2 1 43 43 H 1.08999 * 110.66924 * 318.71706 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6532 0.6582 7 6 3.9588 -0.1307 2.7576 8 7 4.1407 -1.5270 3.1762 9 6 5.2146 -2.1708 2.4090 10 6 5.2786 -3.6573 2.7669 11 6 5.5393 -3.8051 4.2684 12 6 5.5437 -5.2662 4.6375 13 1 4.9937 -5.9763 4.0377 14 6 6.2497 -5.6965 5.7408 15 7 6.8105 -4.8203 6.5454 16 14 6.4100 -7.5241 6.0926 17 1 7.2115 -7.7221 7.3270 18 1 5.0594 -8.1125 6.2792 19 1 7.0869 -8.1904 4.9512 20 6 4.4328 -3.0848 5.0440 21 6 4.3935 -1.6148 4.6201 22 6 2.0013 -0.6380 1.2313 23 1 -0.3633 0.5119 -0.8912 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 1.2759 2.0561 0.4571 27 1 2.2117 1.7000 -1.0203 28 1 3.2136 2.0430 1.6767 29 1 4.1479 1.6460 0.2039 30 1 3.2338 0.3533 3.4120 31 1 4.9119 0.3944 2.8200 32 1 6.1668 -1.6980 2.6501 33 1 5.0148 -2.0621 1.3431 34 1 6.0858 -4.1316 2.2090 35 1 4.3317 -4.1343 2.5133 36 1 6.5050 -3.3641 4.5156 37 1 6.7880 -3.8759 6.3253 38 1 3.4724 -3.5521 4.8264 39 1 4.6360 -3.1499 6.1129 40 1 5.3494 -1.1446 4.8507 41 1 3.5973 -1.1022 5.1601 42 1 2.0040 -1.7235 1.1316 43 1 1.4237 -0.3322 2.1036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259945134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = -10.151302 kcal Electronic energy + Delta-G solvation = -19370.740442 eV Core-core repulsion = 16642.685944 eV Total energy + Delta-G solvation = -2728.054498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41379 -37.97562 -34.51192 -32.60921 -30.93915 -30.04544 -28.89175 -26.62908 -25.20388 -23.46366 -22.35306 -21.60987 -20.99364 -19.80665 -18.84769 -16.84274 -16.29381 -15.53310 -14.99021 -14.78730 -14.09373 -13.94527 -13.70055 -13.58029 -13.51150 -13.07173 -12.69149 -12.46241 -12.07082 -11.86306 -11.54121 -11.51860 -11.38555 -11.11439 -10.97756 -10.77879 -10.69284 -10.46571 -10.30992 -10.20572 -10.06091 -9.50202 -9.08606 -8.53775 -8.45338 -8.16880 -7.82883 -6.30106 -3.98716 3.46880 3.48453 3.67060 3.93749 4.23217 4.57669 4.59600 4.69022 4.90721 5.08259 5.22858 5.29315 5.39446 5.41243 5.49721 5.59926 5.62968 5.68995 5.69686 5.72275 5.82174 5.87338 5.88863 6.01679 6.06191 6.17896 6.22161 6.34512 6.36981 6.56189 6.64113 6.78807 6.92152 6.94094 6.99617 7.14926 7.45329 7.55949 7.69379 7.78120 8.33233 8.51818 8.95133 9.72831 11.09266 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042759 B = 0.004274 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.672864 B = 6549.068434 C = 6789.567588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.037 3.963 4 C -0.128 4.128 5 C -0.086 4.086 6 H 0.085 0.915 7 C 0.063 3.937 8 N -0.532 5.532 9 C 0.056 3.944 10 C -0.099 4.099 11 C 0.031 3.969 12 C -0.590 4.590 13 H 0.048 0.952 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 1.065 2.935 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.289 1.289 20 C -0.103 4.103 21 C 0.057 3.943 22 C 0.053 3.947 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.269 0.731 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 12.358 -10.540 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.091 4.091 4 C -0.167 4.167 5 C -0.106 4.106 6 H 0.103 0.897 7 C -0.065 4.065 8 N -0.257 5.257 9 C -0.072 4.072 10 C -0.137 4.137 11 C 0.012 3.988 12 C -0.628 4.628 13 H 0.066 0.934 14 C -0.185 4.185 15 N -0.552 5.552 16 Si 0.894 3.106 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.141 4.141 21 C -0.071 4.071 22 C -0.074 4.074 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.312 10.724 -10.000 16.855 hybrid contribution -0.218 2.084 -0.203 2.105 sum -8.530 12.808 -10.203 18.464 Atomic orbital electron populations 1.22487 0.88145 1.02213 1.00312 1.64748 1.07899 1.14620 1.37938 1.22833 0.95811 0.90173 1.00319 1.22452 0.97568 0.97198 0.99437 1.22096 0.96989 0.95094 0.96391 0.89670 1.22095 0.99154 0.90302 0.94995 1.61940 1.44913 1.13757 1.05041 1.22223 0.91170 0.96933 0.96851 1.21596 1.00640 0.92070 0.99413 1.18877 0.93628 0.96208 0.90098 1.21961 1.33611 0.92412 1.14846 0.93414 1.25786 0.93654 1.06297 0.92809 1.70800 1.44782 1.03700 1.35905 0.83594 0.76369 0.74494 0.76122 1.20938 1.21532 1.21520 1.21768 1.01077 0.91179 1.00097 1.22222 0.98057 0.99865 0.86928 1.23165 0.93948 1.00435 0.89835 0.91678 0.91193 0.95589 0.94084 0.90662 0.91515 0.91085 0.91410 0.95227 0.95966 0.91873 0.92952 0.92571 0.95818 0.91983 0.92810 0.92576 0.95964 0.92534 0.89337 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.73 16 2 N -0.53 -6.23 5.55 -238.71 -1.33 -7.55 16 3 C 0.04 0.37 6.70 -2.75 -0.02 0.35 16 4 C -0.13 -1.30 6.51 -25.37 -0.17 -1.47 16 5 C -0.09 -1.07 2.98 -88.76 -0.26 -1.34 16 6 H 0.09 1.15 6.30 -51.93 -0.33 0.82 16 7 C 0.06 0.87 4.27 -3.82 -0.02 0.86 16 8 N -0.53 -9.08 4.52 -234.67 -1.06 -10.14 16 9 C 0.06 1.00 5.30 -3.83 -0.02 0.98 16 10 C -0.10 -2.12 5.36 -26.65 -0.14 -2.26 16 11 C 0.03 0.76 1.79 -91.65 -0.16 0.60 16 12 C -0.59 -16.56 8.31 -34.44 -0.29 -16.84 16 13 H 0.05 1.35 7.82 -52.48 -0.41 0.93 16 14 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 15 N -0.92 -27.58 13.63 55.43 0.76 -26.82 16 16 Si 1.07 25.33 29.91 -169.99 -5.08 20.24 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.10 -2.34 5.29 -26.64 -0.14 -2.48 16 21 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 22 C 0.05 0.68 5.87 -1.89 -0.01 0.67 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 26 H 0.04 0.38 7.73 -51.93 -0.40 -0.02 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.63 7.85 -51.93 -0.41 0.23 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.02 0.64 6.94 -51.93 -0.36 0.28 16 37 H 0.27 8.05 6.35 -40.82 -0.26 7.79 16 38 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.38 7.76 -51.93 -0.40 0.98 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -29.45 325.78 -10.57 -40.02 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.98 Total: -1.95 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.78 Total: -18.72 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -1.63 Total: -44.51 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.45 -10.57 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.872 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds