Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47901 * 111.00263 * 2 1 4 4 C 1.53997 * 107.06164 * 145.84324 * 3 2 1 5 5 C 1.54598 * 105.13717 * 358.77321 * 4 3 2 6 6 H 1.08995 * 110.72428 * 96.58237 * 5 4 3 7 7 C 1.53005 * 110.72407 * 219.68466 * 5 4 3 8 8 N 1.46897 * 109.46779 * 182.14533 * 7 5 4 9 9 C 1.46846 * 111.00195 * 66.04155 * 8 7 5 10 10 C 1.53038 * 109.52507 * 185.83312 * 9 8 7 11 11 C 1.53113 * 109.28179 * 300.82193 * 10 9 8 12 12 C 1.50697 * 109.52641 * 177.55651 * 11 10 9 13 13 H 1.08004 * 119.99850 * 334.21596 * 12 11 10 14 14 C 1.37877 * 120.00178 * 154.21873 * 12 11 10 15 15 N 1.31507 * 120.00153 * 6.65953 * 14 12 11 16 16 Si 1.86804 * 119.99806 * 186.66984 * 14 12 11 17 17 H 1.48506 * 109.46868 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.46761 * 299.99240 * 16 14 12 19 19 H 1.48497 * 109.47373 * 59.99320 * 16 14 12 20 20 C 1.53125 * 109.16025 * 57.65369 * 11 10 9 21 21 C 1.46846 * 110.99699 * 190.24780 * 8 7 5 22 22 C 1.48541 * 110.99888 * 117.39224 * 2 1 3 23 23 H 1.09005 * 109.46879 * 60.12583 * 1 2 3 24 24 H 1.08995 * 109.47058 * 180.12715 * 1 2 3 25 25 H 1.09001 * 109.47156 * 300.12932 * 1 2 3 26 26 H 1.08997 * 109.91764 * 26.48926 * 3 2 1 27 27 H 1.09002 * 110.08227 * 265.28908 * 3 2 1 28 28 H 1.09006 * 110.30472 * 239.86080 * 4 3 2 29 29 H 1.08997 * 110.39589 * 117.73354 * 4 3 2 30 30 H 1.09002 * 109.46878 * 62.14406 * 7 5 4 31 31 H 1.08993 * 109.47011 * 302.14526 * 7 5 4 32 32 H 1.09005 * 109.46117 * 65.82315 * 9 8 7 33 33 H 1.08996 * 109.46181 * 305.84939 * 9 8 7 34 34 H 1.08996 * 109.50549 * 180.87631 * 10 9 8 35 35 H 1.09009 * 109.53122 * 60.78175 * 10 9 8 36 36 H 1.08998 * 109.52437 * 297.68619 * 11 10 9 37 37 H 0.97002 * 119.99733 * 355.13130 * 15 14 12 38 38 H 1.08994 * 109.50781 * 62.28512 * 20 11 10 39 39 H 1.08999 * 109.50368 * 182.41152 * 20 11 10 40 40 H 1.08998 * 109.46666 * 294.18154 * 21 8 7 41 41 H 1.09004 * 109.46345 * 54.14305 * 21 8 7 42 42 H 1.09004 * 110.66178 * 81.84488 * 22 2 1 43 43 H 1.08999 * 110.66924 * 318.71706 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6532 0.6582 7 6 3.9588 -0.1307 2.7576 8 7 4.1407 -1.5270 3.1762 9 6 5.2146 -2.1708 2.4090 10 6 5.2786 -3.6573 2.7669 11 6 5.5393 -3.8051 4.2684 12 6 5.5437 -5.2662 4.6375 13 1 4.9937 -5.9763 4.0377 14 6 6.2497 -5.6965 5.7408 15 7 6.8105 -4.8203 6.5454 16 14 6.4100 -7.5241 6.0926 17 1 7.2115 -7.7221 7.3270 18 1 5.0594 -8.1125 6.2792 19 1 7.0869 -8.1904 4.9512 20 6 4.4328 -3.0848 5.0440 21 6 4.3935 -1.6148 4.6201 22 6 2.0013 -0.6380 1.2313 23 1 -0.3633 0.5119 -0.8912 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 1.2759 2.0561 0.4571 27 1 2.2117 1.7000 -1.0203 28 1 3.2136 2.0430 1.6767 29 1 4.1479 1.6460 0.2039 30 1 3.2338 0.3533 3.4120 31 1 4.9119 0.3944 2.8200 32 1 6.1668 -1.6980 2.6501 33 1 5.0148 -2.0621 1.3431 34 1 6.0858 -4.1316 2.2090 35 1 4.3317 -4.1343 2.5133 36 1 6.5050 -3.3641 4.5156 37 1 6.7880 -3.8759 6.3253 38 1 3.4724 -3.5521 4.8264 39 1 4.6360 -3.1499 6.1129 40 1 5.3494 -1.1446 4.8507 41 1 3.5973 -1.1022 5.1601 42 1 2.0040 -1.7235 1.1316 43 1 1.4237 -0.3322 2.1036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259945134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = -29.159559 kcal Electronic energy + Delta-G solvation = -19371.564702 eV Core-core repulsion = 16642.685944 eV Total energy + Delta-G solvation = -2728.878757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53999 -39.32357 -36.19462 -34.05630 -32.45866 -31.64021 -29.96909 -27.88431 -26.67584 -24.92464 -23.96504 -23.17114 -21.89968 -20.87257 -20.57698 -18.90061 -17.35906 -16.55678 -16.30068 -15.94064 -15.66522 -15.58894 -15.20882 -15.01198 -14.62354 -14.34316 -14.05052 -14.00555 -13.34517 -13.14897 -13.02289 -12.77309 -12.58212 -12.38494 -12.35842 -12.15790 -12.05468 -11.95145 -11.83942 -11.73914 -11.44045 -11.35055 -10.93432 -10.55982 -10.24635 -9.39142 -9.23388 -8.58435 -6.27618 1.53169 1.60904 1.80067 2.58895 2.89423 3.11805 3.21870 3.71471 3.78746 3.90243 4.09548 4.15807 4.24567 4.26614 4.39897 4.44168 4.50567 4.53540 4.56830 4.63777 4.71487 4.73483 4.78958 4.80165 4.85000 4.90704 4.96225 4.99846 5.01831 5.08339 5.19006 5.23665 5.31031 5.35914 5.57613 5.73702 5.93445 6.09917 6.14993 6.16520 6.22608 6.30423 6.69751 7.51639 8.81044 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042759 B = 0.004274 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.672864 B = 6549.068434 C = 6789.567588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.083 4.083 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.536 5.536 9 C 0.066 3.934 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.605 4.605 13 H 0.041 0.959 14 C -0.032 4.032 15 N -0.939 5.939 16 Si 1.111 2.889 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.093 4.093 21 C 0.067 3.933 22 C 0.057 3.943 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.050 0.950 36 H -0.005 1.005 37 H 0.257 0.743 38 H 0.045 0.955 39 H 0.027 0.973 40 H 0.017 0.983 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 13.475 -11.775 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.268 5.268 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.102 4.102 6 H 0.094 0.906 7 C -0.061 4.061 8 N -0.260 5.260 9 C -0.062 4.062 10 C -0.131 4.131 11 C 0.006 3.994 12 C -0.643 4.643 13 H 0.060 0.940 14 C -0.230 4.230 15 N -0.577 5.577 16 Si 0.933 3.067 17 H -0.211 1.211 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.071 4.071 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.013 0.987 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.227 11.865 -11.264 18.783 hybrid contribution 0.023 1.755 0.135 1.761 sum -9.204 13.621 -11.129 19.851 Atomic orbital electron populations 1.22524 0.87146 1.02330 1.01183 1.64729 1.09033 1.15766 1.37245 1.22891 0.95870 0.89378 1.00989 1.22436 0.98083 0.95538 0.99978 1.22022 0.96349 0.96739 0.95124 0.90641 1.22161 0.99847 0.87990 0.96114 1.61899 1.44204 1.16249 1.03696 1.22080 0.91455 0.94342 0.98317 1.21457 1.00043 0.94901 0.96681 1.18885 0.92905 0.94737 0.92869 1.22356 1.33197 0.94119 1.14631 0.94021 1.27188 0.93115 1.09884 0.92803 1.70917 1.46509 1.03390 1.36917 0.83006 0.77234 0.70009 0.76403 1.21085 1.19825 1.19697 1.21520 0.99469 0.94058 0.98072 1.22022 0.98722 0.96766 0.88533 1.23039 0.94372 0.99336 0.90357 0.90277 0.91547 0.95182 0.93087 0.89783 0.90443 0.90048 0.90229 0.94613 0.96362 0.89411 0.93345 0.93123 0.98709 0.93264 0.93652 0.95372 0.96522 0.90224 0.91430 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 127.69 1.20 1.49 16 2 N -0.54 -11.64 5.55 -909.14 -5.05 -16.69 16 3 C 0.04 0.63 6.70 86.45 0.58 1.20 16 4 C -0.12 -2.09 6.51 31.48 0.20 -1.88 16 5 C -0.08 -1.86 2.98 -9.59 -0.03 -1.88 16 6 H 0.08 1.85 6.30 -2.39 -0.02 1.84 16 7 C 0.07 1.68 4.27 86.31 0.37 2.05 16 8 N -0.54 -17.51 4.52 -896.35 -4.05 -21.56 16 9 C 0.07 2.29 5.30 86.33 0.46 2.74 16 10 C -0.09 -3.98 5.36 30.64 0.16 -3.81 16 11 C 0.02 1.27 1.79 -11.46 -0.02 1.25 16 12 C -0.61 -34.69 8.31 25.60 0.21 -34.47 16 13 H 0.04 2.38 7.82 -2.91 -0.02 2.36 16 14 C -0.03 -1.87 5.45 84.66 0.46 -1.41 16 15 N -0.94 -58.11 13.63 21.45 0.29 -57.82 16 16 Si 1.11 51.16 29.91 68.60 2.05 53.21 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.09 -4.31 5.29 30.65 0.16 -4.15 16 21 C 0.07 2.49 5.46 86.33 0.47 2.96 16 22 C 0.06 1.35 5.87 86.65 0.51 1.86 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.03 0.50 8.00 -2.39 -0.02 0.48 16 26 H 0.05 0.78 7.73 -2.39 -0.02 0.76 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.18 7.85 -2.38 -0.02 1.17 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.85 7.90 -2.39 -0.02 1.83 16 31 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.09 2.65 6.16 -2.39 -0.01 2.64 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 36 H -0.01 -0.30 6.94 -2.39 -0.02 -0.32 16 37 H 0.26 16.04 6.35 -92.71 -0.59 15.45 16 38 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.03 1.43 7.76 -2.39 -0.02 1.41 16 40 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 2.58 8.01 -2.38 -0.02 2.56 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.04 1.01 7.81 -2.39 -0.02 0.99 16 Total: -1.00 -64.15 325.78 -0.89 -65.04 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.12 Total: 11.88 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.74 Total: -34.06 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -8.80 Total: -96.07 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -64.15 -0.89 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.885 kcal (2) G-P(sol) polarization free energy of solvation -64.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds