Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47840 * 110.99798 * 2 1 4 4 C 1.54908 * 104.79772 * 146.36079 * 3 2 1 5 5 C 1.55137 * 101.65346 * 322.92972 * 4 3 2 6 6 H 1.08999 * 110.85962 * 277.19999 * 5 4 3 7 7 C 1.52997 * 110.70969 * 154.03293 * 5 4 3 8 8 N 1.46898 * 109.47494 * 182.91458 * 7 5 4 9 9 C 1.46851 * 110.99932 * 294.19289 * 8 7 5 10 10 C 1.53036 * 109.51366 * 174.16678 * 9 8 7 11 11 C 1.53096 * 109.29401 * 59.18302 * 10 9 8 12 12 C 1.50697 * 109.57991 * 182.40451 * 11 10 9 13 13 H 1.07996 * 120.00034 * 119.70763 * 12 11 10 14 14 C 1.37876 * 119.99804 * 299.70626 * 12 11 10 15 15 N 1.31517 * 120.00303 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00013 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46985 * 90.00110 * 16 14 12 18 18 H 1.48497 * 109.47099 * 210.00249 * 16 14 12 19 19 H 1.48501 * 109.46995 * 330.00139 * 16 14 12 20 20 C 1.53123 * 109.15369 * 302.33911 * 11 10 9 21 21 C 1.46850 * 110.99987 * 169.98195 * 8 7 5 22 22 C 1.47448 * 110.99792 * 120.84098 * 2 1 3 23 23 H 1.08997 * 109.47681 * 299.15980 * 1 2 3 24 24 H 1.09001 * 109.47144 * 59.15930 * 1 2 3 25 25 H 1.09005 * 109.47282 * 179.15637 * 1 2 3 26 26 H 1.09003 * 110.37308 * 265.19174 * 3 2 1 27 27 H 1.09006 * 110.37739 * 27.42361 * 3 2 1 28 28 H 1.08995 * 110.99362 * 204.83539 * 4 3 2 29 29 H 1.09003 * 110.99101 * 81.02031 * 4 3 2 30 30 H 1.09004 * 109.47049 * 62.91374 * 7 5 4 31 31 H 1.09007 * 109.47316 * 302.91662 * 7 5 4 32 32 H 1.09004 * 109.45788 * 294.17403 * 9 8 7 33 33 H 1.08990 * 109.46216 * 54.15009 * 9 8 7 34 34 H 1.09001 * 109.49682 * 179.11269 * 10 9 8 35 35 H 1.08993 * 109.50116 * 299.23129 * 10 9 8 36 36 H 1.09007 * 109.52584 * 62.23841 * 11 10 9 37 37 H 0.96990 * 120.00210 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.50384 * 297.71364 * 20 11 10 39 39 H 1.08999 * 109.53545 * 177.61035 * 20 11 10 40 40 H 1.08996 * 109.46321 * 305.85000 * 21 8 7 41 41 H 1.08995 * 109.46257 * 65.83359 * 21 8 7 42 42 H 1.09004 * 109.88680 * 117.33934 * 22 2 1 43 43 H 1.09004 * 110.02279 * 356.22385 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3802 0.0000 4 6 3.3046 1.3028 0.8297 5 6 2.9158 0.2823 1.9315 6 1 2.3751 0.7725 2.7412 7 6 4.1568 -0.4337 2.4681 8 7 3.7516 -1.4409 3.4578 9 6 3.1675 -0.8058 4.6460 10 6 2.6264 -1.8839 5.5879 11 6 3.7681 -2.8190 5.9954 12 6 3.2311 -3.9177 6.8759 13 1 3.3239 -4.9492 6.5695 14 6 2.6213 -3.6062 8.0726 15 7 2.5078 -2.3501 8.4455 16 14 1.9549 -4.9682 9.1637 17 1 3.0148 -5.4119 10.1045 18 1 0.7906 -4.4609 9.9333 19 1 1.5297 -6.1144 8.3207 20 6 4.3906 -3.4299 4.7369 21 6 4.8808 -2.3072 3.8196 22 6 1.9973 -0.7057 1.1819 23 1 -0.3634 0.5007 0.8974 24 1 -0.3633 0.5268 -0.8824 25 1 -0.3634 -1.0276 -0.0151 26 1 2.2147 1.7038 -1.0182 27 1 1.2880 2.0596 0.4706 28 1 3.5494 2.2721 1.2640 29 1 4.1302 0.9282 0.2244 30 1 4.8199 0.2921 2.9390 31 1 4.6787 -0.9223 1.6453 32 1 3.9329 -0.2249 5.1606 33 1 2.3541 -0.1469 4.3428 34 1 2.2071 -1.4130 6.4770 35 1 1.8513 -2.4563 5.0786 36 1 4.5254 -2.2539 6.5389 37 1 2.0785 -2.1310 9.2871 38 1 3.6432 -4.0267 4.2142 39 1 5.2316 -4.0640 5.0173 40 1 5.3117 -2.7386 2.9161 41 1 5.6380 -1.7192 4.3381 42 1 2.5697 -1.5785 0.8675 43 1 1.1770 -1.0142 1.8301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259945137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -5.426457 kcal Electronic energy + Delta-G solvation = -19474.136107 eV Core-core repulsion = 16746.286494 eV Total energy + Delta-G solvation = -2727.849613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33985 -37.80873 -34.26768 -32.46675 -30.92212 -29.77646 -28.94091 -26.60764 -25.40503 -23.53858 -22.18448 -21.43165 -20.98294 -19.65325 -18.52996 -16.40532 -16.19553 -15.45293 -15.11609 -14.42852 -14.41957 -13.98530 -13.62334 -13.37956 -13.08386 -12.73896 -12.62479 -12.34507 -12.24158 -11.66784 -11.57758 -11.44776 -11.31440 -11.02826 -10.88321 -10.68652 -10.63426 -10.53835 -10.28958 -10.17326 -9.94189 -9.38887 -8.92745 -8.66645 -8.31984 -8.27043 -7.70353 -5.95259 -4.00397 3.32431 3.39140 3.42938 4.04932 4.32126 4.47070 4.67646 4.85342 4.93044 5.27043 5.33265 5.35420 5.41111 5.49392 5.57152 5.67897 5.72312 5.78564 5.81855 5.84143 5.91268 5.95156 6.07026 6.14913 6.23886 6.25769 6.35414 6.46149 6.64569 6.66753 6.89155 6.96536 7.07161 7.11801 7.19728 7.47002 7.65402 7.73802 7.86391 8.07877 8.18552 8.51067 9.03485 9.63931 11.10957 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.004715 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.332723 B = 5937.023448 C = 6273.984442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.042 3.958 4 C -0.125 4.125 5 C -0.104 4.104 6 H 0.075 0.925 7 C 0.066 3.934 8 N -0.534 5.534 9 C 0.057 3.943 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.106 4.106 21 C 0.061 3.939 22 C 0.060 3.940 23 H 0.026 0.974 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.082 0.918 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 7.395 -14.313 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.124 4.124 6 H 0.094 0.906 7 C -0.063 4.063 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.144 4.144 21 C -0.067 4.067 22 C -0.068 4.068 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.271 6.932 -14.824 16.367 hybrid contribution -0.096 0.302 1.815 1.843 sum -0.367 7.234 -13.008 14.889 Atomic orbital electron populations 1.22517 0.88054 1.02077 1.00167 1.63637 1.07729 1.14004 1.41047 1.23020 0.95645 0.89854 1.00078 1.22741 0.97642 0.99136 0.96835 1.22397 0.97003 0.95812 0.97139 0.90639 1.22025 0.94948 0.93561 0.95717 1.61999 1.30809 1.20171 1.12869 1.22295 0.97290 0.97350 0.90137 1.21642 0.99430 0.95900 0.97185 1.18676 0.93470 0.94280 0.90658 1.21222 1.37215 0.92947 1.03373 0.92763 1.24966 0.96063 0.95285 0.97698 1.69877 1.44458 1.16598 1.22307 0.86642 0.78533 0.82415 0.80689 1.20813 1.21324 1.19938 1.21672 0.99564 0.95978 0.97159 1.22102 0.91158 0.95246 0.98155 1.22739 0.97938 0.96961 0.89118 0.95564 0.91865 0.91334 0.90607 0.93855 0.91108 0.90613 0.95507 0.91183 0.96153 0.92758 0.89110 0.93906 0.96250 0.93152 0.92493 0.93278 0.92482 0.95969 0.89928 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.06 0.55 0.77 16 2 N -0.54 -6.69 5.44 -239.51 -1.30 -7.99 16 3 C 0.04 0.44 6.73 -2.30 -0.02 0.43 16 4 C -0.12 -1.33 6.52 -24.59 -0.16 -1.49 16 5 C -0.10 -1.35 2.79 -88.80 -0.25 -1.60 16 6 H 0.08 1.06 6.49 -51.93 -0.34 0.73 16 7 C 0.07 0.95 4.28 -3.83 -0.02 0.93 16 8 N -0.53 -9.38 4.39 -234.67 -1.03 -10.41 16 9 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 10 C -0.10 -2.45 5.12 -26.66 -0.14 -2.59 16 11 C 0.05 1.19 2.16 -91.66 -0.20 1.00 16 12 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.59 11.37 55.43 0.63 -24.96 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 21 C 0.06 1.11 5.46 -3.83 -0.02 1.08 16 22 C 0.06 0.82 6.24 -2.83 -0.02 0.80 16 23 H 0.03 0.28 8.10 -51.93 -0.42 -0.14 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.45 7.78 -51.93 -0.40 0.04 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 31 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.99 6.23 -51.93 -0.32 0.67 16 34 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.21 7.81 -51.93 -0.41 0.81 16 43 H 0.06 0.86 7.59 -51.93 -0.39 0.47 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -28.14 324.78 -10.69 -38.83 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -8.04 Total: -2.00 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.82 Total: -14.77 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -1.70 Total: -43.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.14 -10.69 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.402 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds