Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47840 * 110.99798 * 2 1 4 4 C 1.54908 * 104.79772 * 146.36079 * 3 2 1 5 5 C 1.55137 * 101.65346 * 322.92972 * 4 3 2 6 6 H 1.08999 * 110.85962 * 277.19999 * 5 4 3 7 7 C 1.52997 * 110.70969 * 154.03293 * 5 4 3 8 8 N 1.46898 * 109.47494 * 182.91458 * 7 5 4 9 9 C 1.46851 * 110.99932 * 294.19289 * 8 7 5 10 10 C 1.53036 * 109.51366 * 174.16678 * 9 8 7 11 11 C 1.53096 * 109.29401 * 59.18302 * 10 9 8 12 12 C 1.50697 * 109.57991 * 182.40451 * 11 10 9 13 13 H 1.07996 * 120.00034 * 119.70763 * 12 11 10 14 14 C 1.37876 * 119.99804 * 299.70626 * 12 11 10 15 15 N 1.31517 * 120.00303 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00013 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46985 * 90.00110 * 16 14 12 18 18 H 1.48497 * 109.47099 * 210.00249 * 16 14 12 19 19 H 1.48501 * 109.46995 * 330.00139 * 16 14 12 20 20 C 1.53123 * 109.15369 * 302.33911 * 11 10 9 21 21 C 1.46850 * 110.99987 * 169.98195 * 8 7 5 22 22 C 1.47448 * 110.99792 * 120.84098 * 2 1 3 23 23 H 1.08997 * 109.47681 * 299.15980 * 1 2 3 24 24 H 1.09001 * 109.47144 * 59.15930 * 1 2 3 25 25 H 1.09005 * 109.47282 * 179.15637 * 1 2 3 26 26 H 1.09003 * 110.37308 * 265.19174 * 3 2 1 27 27 H 1.09006 * 110.37739 * 27.42361 * 3 2 1 28 28 H 1.08995 * 110.99362 * 204.83539 * 4 3 2 29 29 H 1.09003 * 110.99101 * 81.02031 * 4 3 2 30 30 H 1.09004 * 109.47049 * 62.91374 * 7 5 4 31 31 H 1.09007 * 109.47316 * 302.91662 * 7 5 4 32 32 H 1.09004 * 109.45788 * 294.17403 * 9 8 7 33 33 H 1.08990 * 109.46216 * 54.15009 * 9 8 7 34 34 H 1.09001 * 109.49682 * 179.11269 * 10 9 8 35 35 H 1.08993 * 109.50116 * 299.23129 * 10 9 8 36 36 H 1.09007 * 109.52584 * 62.23841 * 11 10 9 37 37 H 0.96990 * 120.00210 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.50384 * 297.71364 * 20 11 10 39 39 H 1.08999 * 109.53545 * 177.61035 * 20 11 10 40 40 H 1.08996 * 109.46321 * 305.85000 * 21 8 7 41 41 H 1.08995 * 109.46257 * 65.83359 * 21 8 7 42 42 H 1.09004 * 109.88680 * 117.33934 * 22 2 1 43 43 H 1.09004 * 110.02279 * 356.22385 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3802 0.0000 4 6 3.3046 1.3028 0.8297 5 6 2.9158 0.2823 1.9315 6 1 2.3751 0.7725 2.7412 7 6 4.1568 -0.4337 2.4681 8 7 3.7516 -1.4409 3.4578 9 6 3.1675 -0.8058 4.6460 10 6 2.6264 -1.8839 5.5879 11 6 3.7681 -2.8190 5.9954 12 6 3.2311 -3.9177 6.8759 13 1 3.3239 -4.9492 6.5695 14 6 2.6213 -3.6062 8.0726 15 7 2.5078 -2.3501 8.4455 16 14 1.9549 -4.9682 9.1637 17 1 3.0148 -5.4119 10.1045 18 1 0.7906 -4.4609 9.9333 19 1 1.5297 -6.1144 8.3207 20 6 4.3906 -3.4299 4.7369 21 6 4.8808 -2.3072 3.8196 22 6 1.9973 -0.7057 1.1819 23 1 -0.3634 0.5007 0.8974 24 1 -0.3633 0.5268 -0.8824 25 1 -0.3634 -1.0276 -0.0151 26 1 2.2147 1.7038 -1.0182 27 1 1.2880 2.0596 0.4706 28 1 3.5494 2.2721 1.2640 29 1 4.1302 0.9282 0.2244 30 1 4.8199 0.2921 2.9390 31 1 4.6787 -0.9223 1.6453 32 1 3.9329 -0.2249 5.1606 33 1 2.3541 -0.1469 4.3428 34 1 2.2071 -1.4130 6.4770 35 1 1.8513 -2.4563 5.0786 36 1 4.5254 -2.2539 6.5389 37 1 2.0785 -2.1310 9.2871 38 1 3.6432 -4.0267 4.2142 39 1 5.2316 -4.0640 5.0173 40 1 5.3117 -2.7386 2.9161 41 1 5.6380 -1.7192 4.3381 42 1 2.5697 -1.5785 0.8675 43 1 1.1770 -1.0142 1.8301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259945137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -23.056491 kcal Electronic energy + Delta-G solvation = -19474.900602 eV Core-core repulsion = 16746.286494 eV Total energy + Delta-G solvation = -2728.614109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48759 -39.21104 -35.93808 -34.00051 -32.39416 -31.47421 -30.05564 -28.03524 -26.79676 -24.93745 -23.82256 -23.00164 -21.90052 -20.81892 -20.27891 -18.44678 -17.27108 -16.77705 -16.42778 -16.24286 -15.70745 -15.11635 -14.91105 -14.78999 -14.42080 -14.30505 -14.06780 -13.93932 -13.45681 -13.15356 -12.90432 -12.80911 -12.49827 -12.46789 -12.42532 -12.19362 -11.98476 -11.85891 -11.78420 -11.69126 -11.54918 -11.27798 -10.78954 -10.61440 -10.37297 -9.26933 -9.13213 -8.08290 -6.21630 1.40325 1.41204 1.51559 2.43531 3.01336 3.14617 3.18706 3.73326 3.82452 3.89335 4.21775 4.29780 4.35918 4.41095 4.48499 4.49581 4.55477 4.56888 4.61145 4.73122 4.77530 4.82576 4.83825 4.94460 4.98924 5.00524 5.03796 5.11244 5.16264 5.20690 5.26270 5.35454 5.43222 5.57127 5.62948 6.00219 6.02326 6.05236 6.15491 6.31400 6.37303 6.41157 6.90228 7.46225 8.96326 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.004715 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.332723 B = 5937.023448 C = 6273.984442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.041 3.959 4 C -0.116 4.116 5 C -0.102 4.102 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.538 5.538 9 C 0.071 3.929 10 C -0.094 4.094 11 C 0.044 3.956 12 C -0.533 4.533 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.099 4.099 21 C 0.067 3.933 22 C 0.064 3.936 23 H 0.022 0.978 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.028 0.972 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 7.766 -15.958 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.087 4.087 4 C -0.155 4.155 5 C -0.122 4.122 6 H 0.081 0.919 7 C -0.058 4.058 8 N -0.263 5.263 9 C -0.057 4.057 10 C -0.132 4.132 11 C 0.025 3.975 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.063 4.063 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.090 0.910 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.057 7.308 -16.487 18.034 hybrid contribution -0.202 0.188 2.311 2.327 sum -0.145 7.495 -14.176 16.036 Atomic orbital electron populations 1.22547 0.87329 1.02169 1.00788 1.63655 1.08544 1.15093 1.40108 1.23107 0.95585 0.88908 1.01055 1.22724 0.97886 0.98999 0.95856 1.22346 0.96220 0.96167 0.97453 0.91870 1.22096 0.95733 0.92983 0.95020 1.61948 1.31017 1.21183 1.12163 1.22010 0.97523 0.95871 0.90247 1.21394 0.98596 0.96452 0.96766 1.18659 0.93115 0.93808 0.91914 1.21601 1.37672 0.93472 1.04382 0.93129 1.25737 0.96306 0.97492 0.99058 1.70017 1.44901 1.18299 1.22637 0.85642 0.77967 0.79702 0.78865 1.20151 1.20890 1.19352 1.21536 0.99260 0.96978 0.95923 1.22038 0.91047 0.94314 0.98705 1.22611 0.97313 0.97037 0.89375 0.95970 0.90116 0.91654 0.89062 0.93508 0.89676 0.89789 0.94978 0.89500 0.97057 0.91329 0.92302 0.95266 0.99506 0.93126 0.93103 0.92903 0.89347 0.96181 0.90968 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.12 127.69 1.16 1.57 16 2 N -0.55 -12.57 5.44 -911.66 -4.96 -17.53 16 3 C 0.04 0.76 6.73 86.77 0.58 1.34 16 4 C -0.12 -2.13 6.52 31.98 0.21 -1.92 16 5 C -0.10 -2.46 2.79 -9.61 -0.03 -2.49 16 6 H 0.06 1.69 6.49 -2.39 -0.02 1.68 16 7 C 0.07 1.83 4.28 86.30 0.37 2.20 16 8 N -0.54 -18.27 4.39 -896.35 -3.94 -22.21 16 9 C 0.07 2.80 5.30 86.32 0.46 3.26 16 10 C -0.09 -4.58 5.12 30.64 0.16 -4.42 16 11 C 0.04 2.25 2.16 -11.47 -0.02 2.22 16 12 C -0.53 -30.19 8.56 25.60 0.22 -29.98 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.69 5.31 84.65 0.45 1.14 16 15 N -0.92 -54.01 11.37 21.45 0.24 -53.77 16 16 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C -0.10 -4.19 5.32 30.65 0.16 -4.03 16 21 C 0.07 2.31 5.46 86.33 0.47 2.78 16 22 C 0.06 1.68 6.24 86.65 0.54 2.22 16 23 H 0.02 0.46 8.10 -2.39 -0.02 0.44 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 0.84 7.78 -2.38 -0.02 0.82 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.43 8.05 -2.39 -0.02 1.41 16 30 H 0.03 0.84 8.12 -2.38 -0.02 0.82 16 31 H 0.09 2.04 7.97 -2.38 -0.02 2.02 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 2.49 6.23 -2.39 -0.01 2.47 16 34 H 0.06 3.24 6.17 -2.39 -0.01 3.23 16 35 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 36 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 37 H 0.26 14.52 8.31 -92.72 -0.77 13.74 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.55 8.01 -2.39 -0.02 2.54 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 2.02 7.81 -2.38 -0.02 2.00 16 43 H 0.04 1.13 7.59 -2.38 -0.02 1.11 16 Total: -1.00 -61.20 324.78 -0.96 -62.17 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.94 Total: 11.01 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.73 Total: -26.10 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -8.66 Total: -93.51 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.20 -0.96 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.110 kcal (2) G-P(sol) polarization free energy of solvation -61.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds