Wall clock time and date at job start Mon Mar 30 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46842 * 111.00292 * 2 1 4 4 C 1.53040 * 109.52656 * 185.83929 * 3 2 1 5 5 C 1.53112 * 109.27730 * 300.82466 * 4 3 2 6 6 C 1.53116 * 109.16220 * 57.65339 * 5 4 3 7 7 C 1.46846 * 110.99985 * 124.21588 * 2 1 3 8 8 H 1.08997 * 109.45995 * 294.17429 * 7 2 1 9 9 C 1.52994 * 109.45844 * 54.14941 * 7 2 1 10 10 N 1.46909 * 109.46943 * 295.39435 * 9 7 2 11 11 C 1.47843 * 110.99869 * 290.97312 * 10 9 7 12 12 C 1.54904 * 104.79612 * 213.63716 * 11 10 9 13 13 C 1.55137 * 101.65514 * 37.06905 * 12 11 10 14 14 C 1.47439 * 110.99924 * 170.13058 * 10 9 7 15 15 H 1.09005 * 109.88901 * 242.66083 * 14 10 9 16 16 C 1.50700 * 109.88903 * 3.85159 * 14 10 9 17 17 H 1.08001 * 120.00243 * 65.08835 * 16 14 10 18 18 C 1.37875 * 119.99568 * 245.08239 * 16 14 10 19 19 N 1.31520 * 120.00646 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99798 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47063 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46894 * 120.00077 * 20 18 16 23 23 H 1.48502 * 109.47359 * 240.00306 * 20 18 16 24 24 H 1.09001 * 109.46916 * 285.58156 * 1 2 3 25 25 H 1.09003 * 109.47150 * 45.58340 * 1 2 3 26 26 H 1.09005 * 109.46705 * 165.58509 * 1 2 3 27 27 H 1.09004 * 109.46127 * 305.86099 * 3 2 1 28 28 H 1.09002 * 109.46238 * 65.82513 * 3 2 1 29 29 H 1.09001 * 109.49617 * 60.76188 * 4 3 2 30 30 H 1.08998 * 109.50432 * 180.83964 * 4 3 2 31 31 H 1.08999 * 109.52250 * 297.74387 * 5 4 3 32 32 H 1.09001 * 109.52176 * 177.55589 * 5 4 3 33 33 H 1.09013 * 109.50329 * 182.40297 * 6 5 4 34 34 H 1.09000 * 109.50909 * 62.28731 * 6 5 4 35 35 H 1.09002 * 109.47376 * 55.38866 * 9 7 2 36 36 H 1.08993 * 109.47571 * 175.39544 * 9 7 2 37 37 H 1.09005 * 110.37372 * 332.46801 * 11 10 9 38 38 H 1.09000 * 110.37637 * 94.80565 * 11 10 9 39 39 H 1.09000 * 110.99114 * 278.97773 * 12 11 10 40 40 H 1.08995 * 111.02353 * 155.17602 * 12 11 10 41 41 H 1.08993 * 110.70810 * 205.96530 * 13 12 11 42 42 H 1.09001 * 110.85254 * 82.79766 * 13 12 11 43 43 H 0.96992 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0143 6 6 3.5182 -0.8715 1.0207 7 6 1.9953 -0.7709 1.1337 8 1 1.7325 -0.2710 2.0659 9 6 1.3892 -2.1756 1.1200 10 7 -0.0606 -2.0855 1.3400 11 6 -0.3609 -1.6544 2.7219 12 6 -1.6741 -2.3893 3.0891 13 6 -1.4711 -3.7606 2.3926 14 6 -0.7130 -3.3860 1.1017 15 1 -1.4139 -3.3026 0.2711 16 6 0.3270 -4.4329 0.7958 17 1 1.0437 -4.7191 1.5514 18 6 0.3635 -5.0253 -0.4487 19 7 -0.5090 -4.6765 -1.3690 20 14 1.6521 -6.3235 -0.8277 21 1 2.5081 -6.5350 0.3672 22 1 0.9800 -7.5981 -1.1865 23 1 2.4924 -5.8697 -1.9650 24 1 -0.3633 0.2760 0.9899 25 1 -0.3633 0.7192 -0.7340 26 1 -0.3633 -0.9954 -0.2558 27 1 1.5634 1.9257 -0.8329 28 1 1.7326 1.8608 0.9376 29 1 3.7813 0.8567 -1.0906 30 1 3.9099 2.3512 -0.1317 31 1 3.8888 1.0353 1.9559 32 1 5.1998 0.4712 0.8904 33 1 3.9100 -1.4305 1.8706 34 1 3.7813 -1.3837 0.0952 35 1 1.5817 -2.6450 0.1553 36 1 1.8403 -2.7737 1.9116 37 1 0.4423 -1.9531 3.3957 38 1 -0.5069 -0.5748 2.7594 39 1 -2.5403 -1.8685 2.6808 40 1 -1.7664 -2.5094 4.1684 41 1 -2.4313 -4.2189 2.1565 42 1 -0.8704 -4.4257 3.0131 43 1 -0.4830 -5.0930 -2.2445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:08 Heat of formation + Delta-G solvation = 10.826989 kcal Electronic energy + Delta-G solvation = -20486.916183 eV Core-core repulsion = 17759.771373 eV Total energy + Delta-G solvation = -2727.144811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18571 -37.39350 -33.12282 -32.59891 -32.06823 -29.40099 -28.27374 -26.37351 -24.28566 -24.11502 -22.38730 -21.14730 -20.18598 -19.12118 -18.98600 -16.32381 -15.36812 -15.11025 -14.83412 -14.56289 -14.17409 -13.91124 -13.80090 -12.86768 -12.81128 -12.48597 -12.30896 -12.04089 -11.75969 -11.53414 -11.38344 -11.05939 -10.90951 -10.85014 -10.69211 -10.51169 -10.37022 -10.24001 -10.11444 -9.98282 -9.86851 -9.63457 -9.14806 -9.09470 -8.54976 -7.56459 -6.89500 -6.01137 -4.08749 3.27237 3.36637 3.39191 4.40112 4.55663 4.97178 5.14160 5.17059 5.22130 5.45293 5.62643 5.64877 5.75715 5.80486 5.82569 5.92443 5.95583 6.05398 6.10058 6.19833 6.22175 6.28234 6.38604 6.42307 6.45525 6.47243 6.56417 6.61211 6.72474 6.78320 6.85895 7.01534 7.03967 7.37015 7.42099 7.75996 7.82129 7.88401 7.93148 8.04310 8.49633 8.60738 9.03889 9.53470 11.01580 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.008732 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.173908 B = 3205.701820 C = 4031.117426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.527 5.527 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.113 4.113 7 C 0.088 3.912 8 H 0.025 0.975 9 C 0.085 3.915 10 N -0.521 5.521 11 C 0.040 3.960 12 C -0.132 4.132 13 C -0.131 4.131 14 C 0.182 3.818 15 H 0.083 0.917 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.076 3.924 19 N -0.880 5.880 20 Si 0.885 3.115 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.018 0.982 25 H 0.029 0.971 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 9.168 4.618 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.252 5.252 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.021 4.021 8 H 0.043 0.957 9 C -0.043 4.043 10 N -0.246 5.246 11 C -0.089 4.089 12 C -0.170 4.170 13 C -0.170 4.170 14 C 0.077 3.923 15 H 0.101 0.899 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.129 4.129 19 N -0.517 5.517 20 Si 0.712 3.288 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.190 9.258 3.637 10.793 hybrid contribution 0.771 -0.872 1.174 1.653 sum 4.961 8.386 4.811 10.867 Atomic orbital electron populations 1.22739 0.85568 1.04711 0.97960 1.61912 1.09240 1.11017 1.43078 1.22085 0.95013 0.91066 0.99284 1.21569 0.95262 0.99174 0.99330 1.21552 0.99302 0.96506 0.98188 1.21599 0.95067 0.96179 1.02281 1.21795 0.93465 0.96016 0.90788 0.95741 1.21971 0.88180 0.91417 1.02775 1.64434 1.09663 1.30929 1.19528 1.22982 0.95864 0.98272 0.91746 1.22677 0.97674 0.98075 0.98594 1.22948 0.99987 0.94809 0.99254 1.20267 0.94322 0.84454 0.93281 0.89913 1.21284 1.15633 1.21792 0.97886 0.93017 1.24951 0.95399 0.96228 0.96295 1.69892 1.35120 1.42061 1.04588 0.86662 0.81919 0.81721 0.78467 1.19817 1.21017 1.20759 0.96319 0.95222 0.86397 0.91592 0.96206 0.91237 0.92487 0.92884 0.92406 0.92167 0.90984 0.88536 0.95477 0.95398 0.92865 0.91982 0.93086 0.93001 0.92967 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 8.18 60.07 0.49 1.20 16 2 N -0.53 -9.53 4.75 -234.92 -1.11 -10.64 16 3 C 0.05 0.81 5.45 -3.83 -0.02 0.79 16 4 C -0.12 -1.53 6.09 -26.65 -0.16 -1.69 16 5 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 6 C -0.11 -1.78 5.37 -26.65 -0.14 -1.92 16 7 C 0.09 1.59 2.02 -67.72 -0.14 1.45 16 8 H 0.02 0.45 7.35 -51.93 -0.38 0.07 16 9 C 0.09 1.80 3.03 -3.82 -0.01 1.79 16 10 N -0.52 -11.08 1.50 -224.72 -0.34 -11.42 16 11 C 0.04 0.74 5.34 -2.30 -0.01 0.73 16 12 C -0.13 -2.38 7.08 -24.60 -0.17 -2.55 16 13 C -0.13 -2.77 6.46 -24.91 -0.16 -2.93 16 14 C 0.18 4.38 3.70 -67.88 -0.25 4.13 16 15 H 0.08 2.28 6.98 -51.93 -0.36 1.91 16 16 C -0.53 -13.77 5.50 -34.44 -0.19 -13.96 16 17 H 0.05 1.38 7.30 -52.49 -0.38 0.99 16 18 C 0.08 2.03 5.37 -17.82 -0.10 1.94 16 19 N -0.88 -24.73 12.63 55.43 0.70 -24.03 16 20 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.02 0.34 6.15 -51.93 -0.32 0.02 16 25 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 26 H 0.12 2.62 5.90 -51.93 -0.31 2.31 16 27 H 0.07 0.94 7.97 -51.93 -0.41 0.52 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 2.38 6.89 -51.93 -0.36 2.02 16 36 H 0.03 0.59 7.17 -51.93 -0.37 0.22 16 37 H 0.03 0.53 7.63 -51.93 -0.40 0.13 16 38 H 0.05 0.95 6.85 -51.93 -0.36 0.59 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -26.48 314.97 -9.88 -36.36 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.83 Total: 1.88 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.03 Total: -12.75 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.75 Total: -46.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.48 -9.88 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.189 kcal (2) G-P(sol) polarization free energy of solvation -26.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds