Wall clock time and date at job start Mon Mar 30 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46842 * 111.00292 * 2 1 4 4 C 1.53040 * 109.52656 * 185.83929 * 3 2 1 5 5 C 1.53112 * 109.27730 * 300.82466 * 4 3 2 6 6 C 1.53116 * 109.16220 * 57.65339 * 5 4 3 7 7 C 1.46846 * 110.99985 * 124.21588 * 2 1 3 8 8 H 1.08997 * 109.45995 * 294.17429 * 7 2 1 9 9 C 1.52994 * 109.45844 * 54.14941 * 7 2 1 10 10 N 1.46909 * 109.46943 * 295.39435 * 9 7 2 11 11 C 1.47843 * 110.99869 * 290.97312 * 10 9 7 12 12 C 1.54904 * 104.79612 * 213.63716 * 11 10 9 13 13 C 1.55137 * 101.65514 * 37.06905 * 12 11 10 14 14 C 1.47439 * 110.99924 * 170.13058 * 10 9 7 15 15 H 1.09005 * 109.88901 * 242.66083 * 14 10 9 16 16 C 1.50700 * 109.88903 * 3.85159 * 14 10 9 17 17 H 1.08001 * 120.00243 * 65.08835 * 16 14 10 18 18 C 1.37875 * 119.99568 * 245.08239 * 16 14 10 19 19 N 1.31520 * 120.00646 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99798 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47063 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46894 * 120.00077 * 20 18 16 23 23 H 1.48502 * 109.47359 * 240.00306 * 20 18 16 24 24 H 1.09001 * 109.46916 * 285.58156 * 1 2 3 25 25 H 1.09003 * 109.47150 * 45.58340 * 1 2 3 26 26 H 1.09005 * 109.46705 * 165.58509 * 1 2 3 27 27 H 1.09004 * 109.46127 * 305.86099 * 3 2 1 28 28 H 1.09002 * 109.46238 * 65.82513 * 3 2 1 29 29 H 1.09001 * 109.49617 * 60.76188 * 4 3 2 30 30 H 1.08998 * 109.50432 * 180.83964 * 4 3 2 31 31 H 1.08999 * 109.52250 * 297.74387 * 5 4 3 32 32 H 1.09001 * 109.52176 * 177.55589 * 5 4 3 33 33 H 1.09013 * 109.50329 * 182.40297 * 6 5 4 34 34 H 1.09000 * 109.50909 * 62.28731 * 6 5 4 35 35 H 1.09002 * 109.47376 * 55.38866 * 9 7 2 36 36 H 1.08993 * 109.47571 * 175.39544 * 9 7 2 37 37 H 1.09005 * 110.37372 * 332.46801 * 11 10 9 38 38 H 1.09000 * 110.37637 * 94.80565 * 11 10 9 39 39 H 1.09000 * 110.99114 * 278.97773 * 12 11 10 40 40 H 1.08995 * 111.02353 * 155.17602 * 12 11 10 41 41 H 1.08993 * 110.70810 * 205.96530 * 13 12 11 42 42 H 1.09001 * 110.85254 * 82.79766 * 13 12 11 43 43 H 0.96992 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0143 6 6 3.5182 -0.8715 1.0207 7 6 1.9953 -0.7709 1.1337 8 1 1.7325 -0.2710 2.0659 9 6 1.3892 -2.1756 1.1200 10 7 -0.0606 -2.0855 1.3400 11 6 -0.3609 -1.6544 2.7219 12 6 -1.6741 -2.3893 3.0891 13 6 -1.4711 -3.7606 2.3926 14 6 -0.7130 -3.3860 1.1017 15 1 -1.4139 -3.3026 0.2711 16 6 0.3270 -4.4329 0.7958 17 1 1.0437 -4.7191 1.5514 18 6 0.3635 -5.0253 -0.4487 19 7 -0.5090 -4.6765 -1.3690 20 14 1.6521 -6.3235 -0.8277 21 1 2.5081 -6.5350 0.3672 22 1 0.9800 -7.5981 -1.1865 23 1 2.4924 -5.8697 -1.9650 24 1 -0.3633 0.2760 0.9899 25 1 -0.3633 0.7192 -0.7340 26 1 -0.3633 -0.9954 -0.2558 27 1 1.5634 1.9257 -0.8329 28 1 1.7326 1.8608 0.9376 29 1 3.7813 0.8567 -1.0906 30 1 3.9099 2.3512 -0.1317 31 1 3.8888 1.0353 1.9559 32 1 5.1998 0.4712 0.8904 33 1 3.9100 -1.4305 1.8706 34 1 3.7813 -1.3837 0.0952 35 1 1.5817 -2.6450 0.1553 36 1 1.8403 -2.7737 1.9116 37 1 0.4423 -1.9531 3.3957 38 1 -0.5069 -0.5748 2.7594 39 1 -2.5403 -1.8685 2.6808 40 1 -1.7664 -2.5094 4.1684 41 1 -2.4313 -4.2189 2.1565 42 1 -0.8704 -4.4257 3.0131 43 1 -0.4830 -5.0930 -2.2445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:08 Heat of formation + Delta-G solvation = -3.593415 kcal Electronic energy + Delta-G solvation = -20487.541499 eV Core-core repulsion = 17759.771373 eV Total energy + Delta-G solvation = -2727.770126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68935 -38.92426 -34.67970 -34.35641 -33.53720 -30.88756 -30.09748 -27.75855 -26.23319 -25.64567 -23.68046 -22.57513 -21.69434 -20.91772 -20.36389 -18.30608 -17.04021 -16.58048 -16.41980 -16.06105 -15.91694 -15.15902 -15.07972 -14.47348 -14.24767 -14.15854 -13.72054 -13.60360 -13.53873 -13.02585 -12.94132 -12.84990 -12.44863 -12.40516 -12.22360 -12.11519 -11.90096 -11.78011 -11.54572 -11.51861 -11.26908 -11.18122 -11.04481 -10.80965 -10.61330 -8.99142 -8.64690 -8.05149 -6.20113 1.36096 1.39602 1.48842 2.40550 3.08773 3.20461 3.61500 3.96478 4.04216 4.06523 4.12151 4.20590 4.31775 4.42332 4.50289 4.57209 4.66113 4.70737 4.79374 4.82170 4.89744 4.95332 4.96709 5.01428 5.11549 5.12802 5.13848 5.17010 5.25321 5.28117 5.37339 5.38213 5.49039 5.61643 5.65045 5.76610 5.91036 6.12011 6.40266 6.55196 6.67992 6.73115 7.03178 7.43453 8.94451 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.008732 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.173908 B = 3205.701820 C = 4031.117426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.547 5.547 3 C 0.053 3.947 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.113 4.113 7 C 0.098 3.902 8 H 0.030 0.970 9 C 0.098 3.902 10 N -0.523 5.523 11 C 0.041 3.959 12 C -0.119 4.119 13 C -0.129 4.129 14 C 0.179 3.821 15 H 0.042 0.958 16 C -0.526 4.526 17 H 0.043 0.957 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.282 1.282 24 H 0.022 0.978 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 10.845 6.054 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.272 5.272 3 C -0.075 4.075 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.011 4.011 8 H 0.048 0.952 9 C -0.031 4.031 10 N -0.246 5.246 11 C -0.087 4.087 12 C -0.156 4.156 13 C -0.168 4.168 14 C 0.073 3.927 15 H 0.060 0.940 16 C -0.565 4.565 17 H 0.061 0.939 18 C -0.173 4.173 19 N -0.553 5.553 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.208 1.208 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.358 10.942 5.089 13.204 hybrid contribution 0.389 -1.359 0.736 1.594 sum 5.747 9.583 5.825 12.601 Atomic orbital electron populations 1.22456 0.86376 1.02634 0.98353 1.61860 1.08746 1.13318 1.43292 1.22178 0.96305 0.89001 0.99975 1.21579 0.93831 1.00814 0.98800 1.21530 1.00310 0.94372 0.98715 1.21607 0.93505 0.98323 1.01711 1.21658 0.94720 0.93721 0.91037 0.95233 1.21750 0.88191 0.93396 0.99735 1.64330 1.09577 1.29145 1.21595 1.23046 0.96337 0.99314 0.89993 1.22631 0.97446 0.95429 1.00130 1.22817 0.99244 0.96768 0.98013 1.20077 0.93647 0.85420 0.93552 0.94007 1.21447 1.15572 1.21941 0.97583 0.93892 1.25609 0.97153 0.98223 0.96317 1.70021 1.36855 1.43511 1.04884 0.85759 0.79762 0.79491 0.78192 1.19279 1.20571 1.20776 0.95995 0.93972 0.90369 0.90847 0.95436 0.92268 0.89523 0.91808 0.90375 0.91461 0.92727 0.92908 0.96773 0.95218 0.91068 0.91172 0.90035 0.93192 0.93514 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.85 8.18 127.69 1.04 2.90 16 2 N -0.55 -19.36 4.75 -897.17 -4.26 -23.62 16 3 C 0.05 1.47 5.45 86.33 0.47 1.94 16 4 C -0.11 -2.63 6.09 30.64 0.19 -2.44 16 5 C -0.11 -2.60 6.00 30.67 0.18 -2.42 16 6 C -0.11 -3.42 5.37 30.65 0.16 -3.25 16 7 C 0.10 3.43 2.02 44.94 0.09 3.53 16 8 H 0.03 1.02 7.35 -2.39 -0.02 1.01 16 9 C 0.10 4.24 3.03 86.30 0.26 4.50 16 10 N -0.52 -22.57 1.50 -864.89 -1.30 -23.87 16 11 C 0.04 1.47 5.34 86.77 0.46 1.94 16 12 C -0.12 -4.03 7.08 31.98 0.23 -3.81 16 13 C -0.13 -5.48 6.46 31.78 0.21 -5.27 16 14 C 0.18 8.93 3.70 44.51 0.16 9.09 16 15 H 0.04 2.43 6.98 -2.38 -0.02 2.41 16 16 C -0.53 -28.47 5.50 25.60 0.14 -28.33 16 17 H 0.04 2.35 7.30 -2.91 -0.02 2.33 16 18 C 0.03 1.54 5.37 84.65 0.45 1.99 16 19 N -0.91 -53.63 12.63 21.45 0.27 -53.36 16 20 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 H 0.02 0.78 6.15 -2.39 -0.01 0.76 16 25 H 0.04 1.42 7.90 -2.39 -0.02 1.41 16 26 H 0.08 3.59 5.90 -2.38 -0.01 3.58 16 27 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 28 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 2.73 6.89 -2.39 -0.02 2.72 16 36 H 0.01 0.63 7.17 -2.39 -0.02 0.61 16 37 H 0.03 1.06 7.63 -2.38 -0.02 1.05 16 38 H 0.07 2.34 6.85 -2.39 -0.02 2.33 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 2.00 7.84 -2.39 -0.02 1.99 16 43 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -59.25 314.97 1.75 -57.50 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.95 Total: 16.92 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.06 Total: -19.63 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -5.28 Total: -100.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.25 1.75 -57.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.905 kcal (2) G-P(sol) polarization free energy of solvation -59.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds