Wall clock time and date at job start Mon Mar 30 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46838 * 111.00435 * 2 1 4 4 C 1.53039 * 109.51802 * 174.16335 * 3 2 1 5 5 C 1.53091 * 109.28850 * 59.18705 * 4 3 2 6 6 C 1.53117 * 109.15648 * 302.33728 * 5 4 3 7 7 C 1.46853 * 111.00318 * 235.78503 * 2 1 3 8 8 H 1.09008 * 109.45539 * 65.83945 * 7 2 1 9 9 C 1.53003 * 109.46371 * 305.86179 * 7 2 1 10 10 N 1.46899 * 109.46885 * 65.32429 * 9 7 2 11 11 C 1.47435 * 111.00244 * 70.23243 * 10 9 7 12 12 C 1.54320 * 107.23231 * 123.25509 * 11 10 9 13 13 C 1.55142 * 103.02144 * 22.28414 * 12 11 10 14 14 C 1.47843 * 110.99614 * 191.07631 * 10 9 7 15 15 H 1.09006 * 110.37846 * 332.46344 * 14 10 9 16 16 C 1.50702 * 110.37735 * 94.80581 * 14 10 9 17 17 H 1.08006 * 119.99817 * 0.02562 * 16 14 10 18 18 C 1.37875 * 120.00452 * 179.97438 * 16 14 10 19 19 N 1.31515 * 119.99867 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00321 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47268 * 59.99703 * 20 18 16 22 22 H 1.48501 * 109.47413 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47226 * 300.00135 * 20 18 16 24 24 H 1.09004 * 109.46517 * 72.82085 * 1 2 3 25 25 H 1.08995 * 109.47106 * 192.81874 * 1 2 3 26 26 H 1.08998 * 109.46851 * 312.82608 * 1 2 3 27 27 H 1.09003 * 109.46215 * 294.17548 * 3 2 1 28 28 H 1.09006 * 109.46329 * 54.15309 * 3 2 1 29 29 H 1.09004 * 109.50010 * 179.11195 * 4 3 2 30 30 H 1.08993 * 109.50357 * 299.23177 * 4 3 2 31 31 H 1.08997 * 109.52598 * 182.43437 * 5 4 3 32 32 H 1.09003 * 109.57861 * 62.27509 * 5 4 3 33 33 H 1.09007 * 109.50481 * 297.71821 * 6 5 4 34 34 H 1.09000 * 109.54319 * 177.61701 * 6 5 4 35 35 H 1.08997 * 109.46736 * 185.32179 * 9 7 2 36 36 H 1.09001 * 109.46675 * 305.32533 * 9 7 2 37 37 H 1.09003 * 109.89335 * 242.65713 * 11 10 9 38 38 H 1.09001 * 109.89095 * 3.85184 * 11 10 9 39 39 H 1.08995 * 110.70782 * 140.66996 * 12 11 10 40 40 H 1.09002 * 110.70683 * 263.90096 * 12 11 10 41 41 H 1.09000 * 110.98942 * 82.43555 * 13 12 11 42 42 H 1.09002 * 110.98863 * 206.25656 * 13 12 11 43 43 H 0.97003 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3338 0.1467 5 6 4.1189 0.5369 -1.0143 6 6 3.5182 -0.8716 -1.0208 7 6 1.9954 -0.7709 -1.1337 8 1 1.7328 -0.2708 -2.0660 9 6 1.3891 -2.1756 -1.1204 10 7 -0.0578 -2.0867 -1.3578 11 6 -0.3417 -1.6912 -2.7494 12 6 -1.2409 -2.7859 -3.3614 13 6 -1.8812 -3.4501 -2.1141 14 6 -0.7188 -3.3823 -1.0924 15 1 -0.0218 -4.2044 -1.2554 16 6 -1.2551 -3.4191 0.3155 17 1 -1.1252 -2.5662 0.9653 18 6 -1.9125 -4.5410 0.7738 19 7 -2.0721 -5.5789 -0.0179 20 14 -2.5779 -4.5863 2.5186 21 1 -3.5657 -3.4924 2.7003 22 1 -3.2366 -5.8945 2.7634 23 1 -1.4598 -4.4081 3.4796 24 1 -0.3632 0.3036 -0.9819 25 1 -0.3633 -1.0020 0.2280 26 1 -0.3633 0.6986 0.7537 27 1 1.7326 1.8607 -0.9376 28 1 1.5636 1.9256 0.8331 29 1 3.9101 2.3508 0.1308 30 1 3.7814 0.8564 1.0905 31 1 5.1998 0.4713 -0.8904 32 1 3.8898 1.0350 -1.9564 33 1 3.7814 -1.3837 -0.0952 34 1 3.9099 -1.4311 -1.8703 35 1 1.8496 -2.7774 -1.9039 36 1 1.5705 -2.6403 -0.1512 37 1 -0.8616 -0.7333 -2.7641 38 1 0.5893 -1.6190 -3.3117 39 1 -2.0069 -2.3438 -3.9985 40 1 -0.6441 -3.5078 -3.9189 41 1 -2.7413 -2.8784 -1.7655 42 1 -2.1591 -4.4835 -2.3214 43 1 -2.5343 -6.3684 0.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:11 Heat of formation + Delta-G solvation = 9.656924 kcal Electronic energy + Delta-G solvation = -20256.374733 eV Core-core repulsion = 17529.179185 eV Total energy + Delta-G solvation = -2727.195548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30864 -37.41977 -33.27051 -32.67238 -32.03927 -29.52203 -28.19519 -26.49331 -24.51948 -24.04031 -22.51842 -21.26643 -20.06576 -19.37213 -18.95149 -16.52339 -15.42851 -15.21023 -15.02846 -14.38050 -14.17152 -14.10325 -13.85206 -12.94207 -12.77456 -12.67832 -12.35887 -12.05696 -11.85613 -11.57660 -11.47780 -11.05352 -10.94430 -10.82244 -10.75161 -10.59928 -10.46901 -10.26147 -10.19600 -10.12213 -9.91672 -9.70493 -9.43028 -8.97268 -8.35582 -7.70859 -6.99440 -5.97127 -3.97821 3.37848 3.41420 3.45401 4.41811 4.45848 4.87218 5.02054 5.05986 5.21742 5.34106 5.47301 5.58918 5.63975 5.66107 5.73180 5.77976 5.87149 5.97732 6.01161 6.06545 6.09418 6.18600 6.24052 6.28271 6.35518 6.37679 6.45612 6.51856 6.58494 6.62501 6.80221 7.03858 7.11401 7.36335 7.46891 7.55257 7.70238 7.77822 7.99068 8.15635 8.27297 8.55736 9.08554 9.66319 11.12162 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.007002 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.073235 B = 3997.633049 C = 4638.939317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.528 5.528 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.095 3.905 8 H 0.031 0.969 9 C 0.062 3.938 10 N -0.517 5.517 11 C 0.043 3.957 12 C -0.150 4.150 13 C -0.103 4.103 14 C 0.208 3.792 15 H 0.013 0.987 16 C -0.493 4.493 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.277 1.277 24 H 0.018 0.982 25 H 0.132 0.868 26 H 0.031 0.969 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 10.089 -3.618 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.253 5.253 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.014 4.014 8 H 0.049 0.951 9 C -0.067 4.067 10 N -0.241 5.241 11 C -0.086 4.086 12 C -0.189 4.189 13 C -0.142 4.142 14 C 0.102 3.898 15 H 0.030 0.970 16 C -0.531 4.531 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.036 0.964 25 H 0.149 0.851 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.135 10.040 -2.850 13.233 hybrid contribution -0.337 -0.226 -0.515 0.656 sum 7.798 9.814 -3.365 12.979 Atomic orbital electron populations 1.22963 0.85050 1.06112 0.98017 1.61946 1.09615 1.11265 1.42509 1.22096 0.94949 0.90939 0.99529 1.21572 0.95243 0.99310 0.99239 1.21539 0.99377 0.96274 0.98350 1.21618 0.94826 0.96553 1.02211 1.21633 0.93340 0.94909 0.91563 0.95101 1.22190 0.89159 0.93988 1.01392 1.64056 1.08004 1.32908 1.19169 1.22769 0.97425 0.98243 0.90114 1.22875 0.98799 0.98002 0.99215 1.22625 0.99107 0.99864 0.92572 1.20145 0.90672 0.83825 0.95127 0.96973 1.21041 1.35037 1.00369 0.96698 0.91563 1.24940 0.96316 0.95571 0.97439 1.69952 1.42960 1.04955 1.35745 0.86613 0.79188 0.76911 0.84997 1.20296 1.21601 1.20282 0.96381 0.85056 0.95006 0.96031 0.91416 0.92360 0.91209 0.92279 0.92762 0.90989 0.92124 0.95647 0.89748 0.92351 0.94742 0.92819 0.93054 0.92540 0.91055 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.19 60.06 0.49 0.96 16 2 N -0.53 -8.87 4.75 -234.92 -1.11 -9.99 16 3 C 0.05 0.75 5.45 -3.84 -0.02 0.73 16 4 C -0.12 -1.39 6.09 -26.66 -0.16 -1.55 16 5 C -0.12 -1.38 6.00 -26.62 -0.16 -1.54 16 6 C -0.11 -1.55 5.37 -26.65 -0.14 -1.70 16 7 C 0.09 1.53 2.01 -67.72 -0.14 1.40 16 8 H 0.03 0.52 7.07 -51.92 -0.37 0.15 16 9 C 0.06 1.16 3.84 -3.82 -0.01 1.15 16 10 N -0.52 -10.63 1.34 -224.75 -0.30 -10.93 16 11 C 0.04 0.79 5.70 -2.84 -0.02 0.77 16 12 C -0.15 -2.85 6.94 -24.91 -0.17 -3.02 16 13 C -0.10 -2.37 5.86 -24.59 -0.14 -2.52 16 14 C 0.21 5.07 2.28 -67.34 -0.15 4.92 16 15 H 0.01 0.34 7.81 -51.93 -0.41 -0.07 16 16 C -0.49 -13.19 8.61 -34.44 -0.30 -13.49 16 17 H 0.07 1.79 6.22 -52.48 -0.33 1.46 16 18 C 0.06 1.60 5.34 -17.82 -0.10 1.50 16 19 N -0.90 -25.42 12.27 55.43 0.68 -24.74 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.02 0.33 6.66 -51.93 -0.35 -0.02 16 25 H 0.13 2.84 3.84 -51.93 -0.20 2.64 16 26 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.47 7.95 -51.93 -0.41 0.06 16 36 H 0.08 1.77 8.07 -51.93 -0.42 1.35 16 37 H 0.06 1.05 7.34 -51.93 -0.38 0.67 16 38 H 0.03 0.59 6.96 -51.93 -0.36 0.23 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 42 H 0.07 1.78 7.57 -51.93 -0.39 1.39 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -26.98 315.95 -9.82 -36.80 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.80 Total: 0.11 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.02 Total: -12.38 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.74 Total: -45.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.98 -9.82 -36.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.455 kcal (2) G-P(sol) polarization free energy of solvation -26.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds