Wall clock time and date at job start Mon Mar 30 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46838 * 111.00435 * 2 1 4 4 C 1.53039 * 109.51802 * 174.16335 * 3 2 1 5 5 C 1.53091 * 109.28850 * 59.18705 * 4 3 2 6 6 C 1.53117 * 109.15648 * 302.33728 * 5 4 3 7 7 C 1.46853 * 111.00318 * 235.78503 * 2 1 3 8 8 H 1.09008 * 109.45539 * 65.83945 * 7 2 1 9 9 C 1.53003 * 109.46371 * 305.86179 * 7 2 1 10 10 N 1.46899 * 109.46885 * 65.32429 * 9 7 2 11 11 C 1.47435 * 111.00244 * 70.23243 * 10 9 7 12 12 C 1.54320 * 107.23231 * 123.25509 * 11 10 9 13 13 C 1.55142 * 103.02144 * 22.28414 * 12 11 10 14 14 C 1.47843 * 110.99614 * 191.07631 * 10 9 7 15 15 H 1.09006 * 110.37846 * 332.46344 * 14 10 9 16 16 C 1.50702 * 110.37735 * 94.80581 * 14 10 9 17 17 H 1.08006 * 119.99817 * 0.02562 * 16 14 10 18 18 C 1.37875 * 120.00452 * 179.97438 * 16 14 10 19 19 N 1.31515 * 119.99867 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00321 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47268 * 59.99703 * 20 18 16 22 22 H 1.48501 * 109.47413 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47226 * 300.00135 * 20 18 16 24 24 H 1.09004 * 109.46517 * 72.82085 * 1 2 3 25 25 H 1.08995 * 109.47106 * 192.81874 * 1 2 3 26 26 H 1.08998 * 109.46851 * 312.82608 * 1 2 3 27 27 H 1.09003 * 109.46215 * 294.17548 * 3 2 1 28 28 H 1.09006 * 109.46329 * 54.15309 * 3 2 1 29 29 H 1.09004 * 109.50010 * 179.11195 * 4 3 2 30 30 H 1.08993 * 109.50357 * 299.23177 * 4 3 2 31 31 H 1.08997 * 109.52598 * 182.43437 * 5 4 3 32 32 H 1.09003 * 109.57861 * 62.27509 * 5 4 3 33 33 H 1.09007 * 109.50481 * 297.71821 * 6 5 4 34 34 H 1.09000 * 109.54319 * 177.61701 * 6 5 4 35 35 H 1.08997 * 109.46736 * 185.32179 * 9 7 2 36 36 H 1.09001 * 109.46675 * 305.32533 * 9 7 2 37 37 H 1.09003 * 109.89335 * 242.65713 * 11 10 9 38 38 H 1.09001 * 109.89095 * 3.85184 * 11 10 9 39 39 H 1.08995 * 110.70782 * 140.66996 * 12 11 10 40 40 H 1.09002 * 110.70683 * 263.90096 * 12 11 10 41 41 H 1.09000 * 110.98942 * 82.43555 * 13 12 11 42 42 H 1.09002 * 110.98863 * 206.25656 * 13 12 11 43 43 H 0.97003 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3338 0.1467 5 6 4.1189 0.5369 -1.0143 6 6 3.5182 -0.8716 -1.0208 7 6 1.9954 -0.7709 -1.1337 8 1 1.7328 -0.2708 -2.0660 9 6 1.3891 -2.1756 -1.1204 10 7 -0.0578 -2.0867 -1.3578 11 6 -0.3417 -1.6912 -2.7494 12 6 -1.2409 -2.7859 -3.3614 13 6 -1.8812 -3.4501 -2.1141 14 6 -0.7188 -3.3823 -1.0924 15 1 -0.0218 -4.2044 -1.2554 16 6 -1.2551 -3.4191 0.3155 17 1 -1.1252 -2.5662 0.9653 18 6 -1.9125 -4.5410 0.7738 19 7 -2.0721 -5.5789 -0.0179 20 14 -2.5779 -4.5863 2.5186 21 1 -3.5657 -3.4924 2.7003 22 1 -3.2366 -5.8945 2.7634 23 1 -1.4598 -4.4081 3.4796 24 1 -0.3632 0.3036 -0.9819 25 1 -0.3633 -1.0020 0.2280 26 1 -0.3633 0.6986 0.7537 27 1 1.7326 1.8607 -0.9376 28 1 1.5636 1.9256 0.8331 29 1 3.9101 2.3508 0.1308 30 1 3.7814 0.8564 1.0905 31 1 5.1998 0.4713 -0.8904 32 1 3.8898 1.0350 -1.9564 33 1 3.7814 -1.3837 -0.0952 34 1 3.9099 -1.4311 -1.8703 35 1 1.8496 -2.7774 -1.9039 36 1 1.5705 -2.6403 -0.1512 37 1 -0.8616 -0.7333 -2.7641 38 1 0.5893 -1.6190 -3.3117 39 1 -2.0069 -2.3438 -3.9985 40 1 -0.6441 -3.5078 -3.9189 41 1 -2.7413 -2.8784 -1.7655 42 1 -2.1591 -4.4835 -2.3214 43 1 -2.5343 -6.3684 0.3046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:11 Heat of formation + Delta-G solvation = -4.957888 kcal Electronic energy + Delta-G solvation = -20257.008479 eV Core-core repulsion = 17529.179185 eV Total energy + Delta-G solvation = -2727.829294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70729 -38.91735 -34.81630 -34.28143 -33.51870 -30.95644 -30.04790 -27.80707 -26.32936 -25.61646 -23.69599 -22.63226 -21.65134 -21.00283 -20.26965 -18.49561 -17.02584 -16.70893 -16.39118 -16.16618 -15.66902 -15.25143 -15.08245 -14.46066 -14.30603 -14.02511 -13.88520 -13.54198 -13.35937 -13.16815 -13.06003 -12.79262 -12.50396 -12.45929 -12.15311 -12.11299 -11.94581 -11.82090 -11.63635 -11.54277 -11.42025 -11.21443 -10.95979 -10.92624 -10.44012 -9.03747 -8.66076 -8.07152 -6.14472 1.44295 1.45536 1.52983 2.45862 3.16474 3.22602 3.37380 3.89832 4.01666 4.04246 4.10556 4.16102 4.28179 4.41277 4.47089 4.48750 4.61953 4.69250 4.74026 4.80767 4.81832 4.89472 4.92059 4.98770 5.01647 5.08073 5.13149 5.17325 5.19145 5.27252 5.35837 5.36565 5.55069 5.56948 5.65577 5.72573 5.97121 6.23905 6.36049 6.48930 6.55645 6.65755 6.98031 7.53174 9.00417 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.007002 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.073235 B = 3997.633049 C = 4638.939317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.543 5.543 3 C 0.052 3.948 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.103 3.897 8 H 0.033 0.967 9 C 0.066 3.934 10 N -0.518 5.518 11 C 0.044 3.956 12 C -0.138 4.138 13 C -0.099 4.099 14 C 0.211 3.789 15 H -0.025 1.025 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.015 0.985 25 H 0.097 0.903 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.045 0.955 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.400 12.135 -4.098 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.268 5.268 3 C -0.076 4.076 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.006 4.006 8 H 0.051 0.949 9 C -0.063 4.063 10 N -0.242 5.242 11 C -0.083 4.083 12 C -0.176 4.176 13 C -0.138 4.138 14 C 0.104 3.896 15 H -0.007 1.007 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.034 0.966 25 H 0.115 0.885 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.290 12.108 -3.332 15.621 hybrid contribution -0.667 -0.851 -0.364 1.141 sum 8.623 11.257 -3.696 14.654 Atomic orbital electron populations 1.22683 0.86385 1.04087 0.98017 1.61915 1.08601 1.13345 1.42958 1.22185 0.96446 0.89060 0.99888 1.21572 0.93558 1.00844 0.99018 1.21528 1.00426 0.94530 0.98563 1.21620 0.92830 0.98353 1.02226 1.21559 0.94863 0.92693 0.91471 0.94879 1.22166 0.88391 0.96034 0.99740 1.64024 1.08920 1.30341 1.20895 1.22825 0.98344 0.98294 0.88880 1.22801 0.99272 0.97938 0.97624 1.22404 0.98288 0.98527 0.94572 1.19920 0.90597 0.84464 0.94609 1.00723 1.21320 1.34714 1.00091 0.97965 0.92284 1.25661 0.96760 0.95348 1.00956 1.70073 1.43809 1.05384 1.37271 0.85680 0.78590 0.76993 0.80759 1.19696 1.21243 1.20027 0.96602 0.88508 0.94253 0.95645 0.91023 0.89812 0.91928 0.90220 0.92007 0.92043 0.90954 0.95375 0.92810 0.91282 0.92796 0.90181 0.92401 0.93976 0.93642 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 8.19 127.69 1.05 2.35 16 2 N -0.54 -17.63 4.75 -897.15 -4.26 -21.89 16 3 C 0.05 1.33 5.45 86.33 0.47 1.80 16 4 C -0.11 -2.33 6.09 30.64 0.19 -2.14 16 5 C -0.11 -2.26 6.00 30.66 0.18 -2.07 16 6 C -0.11 -2.83 5.37 30.64 0.16 -2.66 16 7 C 0.10 3.20 2.01 44.94 0.09 3.29 16 8 H 0.03 1.03 7.07 -2.38 -0.02 1.01 16 9 C 0.07 2.50 3.84 86.30 0.33 2.83 16 10 N -0.52 -21.47 1.34 -864.99 -1.16 -22.63 16 11 C 0.04 1.57 5.70 86.65 0.49 2.06 16 12 C -0.14 -5.06 6.94 31.78 0.22 -4.84 16 13 C -0.10 -4.66 5.86 31.98 0.19 -4.48 16 14 C 0.21 10.64 2.28 44.64 0.10 10.75 16 15 H -0.02 -1.42 7.81 -2.38 -0.02 -1.44 16 16 C -0.50 -27.82 8.61 25.60 0.22 -27.60 16 17 H 0.06 3.30 6.22 -2.91 -0.02 3.28 16 18 C 0.01 0.61 5.34 84.65 0.45 1.06 16 19 N -0.93 -54.08 12.27 21.45 0.26 -53.81 16 20 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 24 H 0.02 0.56 6.66 -2.38 -0.02 0.54 16 25 H 0.10 4.26 3.84 -2.39 -0.01 4.25 16 26 H 0.04 1.32 7.93 -2.39 -0.02 1.30 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 1.77 7.99 -2.38 -0.02 1.75 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 1.04 7.95 -2.39 -0.02 1.02 16 36 H 0.05 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.07 2.32 7.34 -2.39 -0.02 2.31 16 38 H 0.05 1.71 6.96 -2.39 -0.02 1.69 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 2.06 8.05 -2.39 -0.02 2.04 16 42 H 0.04 2.35 7.57 -2.39 -0.02 2.33 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -59.62 315.95 1.97 -57.64 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.95 Total: 13.59 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.15 Total: -19.64 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -5.15 Total: -98.33 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -59.62 1.97 -57.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.684 kcal (2) G-P(sol) polarization free energy of solvation -59.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds