Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46842 * 110.99866 * 2 1 4 4 C 1.53043 * 109.52482 * 185.83664 * 3 2 1 5 5 C 1.53119 * 109.27625 * 300.82062 * 4 3 2 6 6 C 1.53114 * 109.16121 * 57.65090 * 5 4 3 7 7 C 1.46845 * 110.99685 * 124.20436 * 2 1 3 8 8 H 1.08999 * 109.46856 * 294.17158 * 7 2 1 9 9 C 1.53008 * 109.46250 * 54.15139 * 7 2 1 10 10 N 1.46896 * 109.47382 * 185.74716 * 9 7 2 11 11 C 1.47449 * 110.99882 * 281.74505 * 10 9 7 12 12 C 1.54318 * 107.22838 * 236.74047 * 11 10 9 13 13 C 1.55142 * 103.17871 * 337.62638 * 12 11 10 14 14 C 1.47836 * 111.00255 * 160.90003 * 10 9 7 15 15 H 1.08998 * 110.37550 * 27.53261 * 14 10 9 16 16 C 1.50706 * 110.37471 * 265.30541 * 14 10 9 17 17 H 1.08002 * 119.99749 * 359.97438 * 16 14 10 18 18 C 1.37871 * 120.00171 * 180.02562 * 16 14 10 19 19 N 1.31520 * 119.99927 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00096 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47258 * 59.99603 * 20 18 16 22 22 H 1.48504 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46993 * 299.99242 * 20 18 16 24 24 H 1.08996 * 109.47476 * 298.98175 * 1 2 3 25 25 H 1.09006 * 109.46755 * 58.98266 * 1 2 3 26 26 H 1.09000 * 109.47334 * 178.97744 * 1 2 3 27 27 H 1.09000 * 109.46586 * 305.85082 * 3 2 1 28 28 H 1.09004 * 109.46641 * 65.81923 * 3 2 1 29 29 H 1.09000 * 109.50269 * 60.76070 * 4 3 2 30 30 H 1.09000 * 109.50341 * 180.84011 * 4 3 2 31 31 H 1.08994 * 109.52503 * 177.55918 * 5 4 3 32 32 H 1.08997 * 109.52541 * 297.74704 * 5 4 3 33 33 H 1.09002 * 109.50521 * 182.40124 * 6 5 4 34 34 H 1.09006 * 109.50582 * 62.28531 * 6 5 4 35 35 H 1.08997 * 109.46971 * 65.74143 * 9 7 2 36 36 H 1.09004 * 109.46689 * 305.74455 * 9 7 2 37 37 H 1.08997 * 109.88984 * 117.33604 * 11 10 9 38 38 H 1.09002 * 110.02166 * 356.22307 * 11 10 9 39 39 H 1.09001 * 110.70742 * 96.10243 * 12 11 10 40 40 H 1.09006 * 110.70266 * 219.15613 * 12 11 10 41 41 H 1.09004 * 110.98651 * 153.83250 * 13 12 11 42 42 H 1.08997 * 110.98935 * 277.65039 * 13 12 11 43 43 H 0.97002 * 119.99828 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5370 1.0145 6 6 3.5181 -0.8713 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7325 -0.2707 2.0661 9 6 1.3890 -2.1755 1.1205 10 7 1.8067 -2.9005 2.3279 11 6 3.1877 -3.3992 2.1935 12 6 3.1450 -4.9268 2.4085 13 6 1.8361 -5.1340 3.2151 14 6 0.9147 -4.0498 2.5910 15 1 0.4787 -4.4127 1.6602 16 6 -0.1711 -3.6600 3.5607 17 1 -0.2081 -2.6550 3.9544 18 6 -1.1164 -4.5866 3.9460 19 7 -1.0710 -5.8106 3.4669 20 14 -2.4627 -4.1033 5.1475 21 1 -3.2628 -2.9918 4.5734 22 1 -3.3458 -5.2708 5.3973 23 1 -1.8500 -3.6630 6.4265 24 1 -0.3634 0.4979 0.8989 25 1 -0.3633 0.5296 -0.8808 26 1 -0.3634 -1.0275 -0.0183 27 1 1.5634 1.9257 -0.8330 28 1 1.7323 1.8609 0.9376 29 1 3.7814 0.8568 -1.0905 30 1 3.9098 2.3513 -0.1317 31 1 5.1996 0.4715 0.8908 32 1 3.8886 1.0355 1.9561 33 1 3.9098 -1.4302 1.8709 34 1 3.7813 -1.3836 0.0955 35 1 1.7346 -2.7119 0.2368 36 1 0.3017 -2.1019 1.0988 37 1 3.8242 -2.9363 2.9477 38 1 3.5702 -3.1754 1.1977 39 1 3.0959 -5.4492 1.4531 40 1 4.0091 -5.2593 2.9839 41 1 1.4325 -6.1338 3.0543 42 1 1.9976 -4.9459 4.2765 43 1 -1.7364 -6.4624 3.7377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = 5.306902 kcal Electronic energy + Delta-G solvation = -19990.990470 eV Core-core repulsion = 17263.606290 eV Total energy + Delta-G solvation = -2727.384180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.37287 -37.46721 -33.47202 -32.90809 -31.98031 -29.52116 -28.04042 -26.52273 -25.31634 -24.04941 -22.61590 -21.15537 -19.78322 -19.48674 -19.18654 -16.43503 -15.60716 -15.34212 -14.75653 -14.60276 -14.42916 -14.19360 -13.65299 -13.42976 -12.91029 -12.61365 -12.40834 -12.31869 -11.91192 -11.59381 -11.56627 -11.48067 -11.03313 -10.94123 -10.80434 -10.67571 -10.59146 -10.30063 -10.09322 -10.04922 -9.74635 -9.62112 -9.41895 -8.96679 -8.37029 -8.06690 -7.18500 -5.98023 -3.98737 3.34807 3.38954 3.42215 4.07884 4.45400 4.92190 4.99578 5.07038 5.19174 5.32369 5.34151 5.52442 5.56992 5.67394 5.70878 5.73360 5.76278 5.79912 5.91655 5.97396 6.04309 6.10694 6.12503 6.18502 6.28106 6.35183 6.40872 6.42347 6.57977 6.59312 6.63415 6.68645 7.06813 7.12299 7.30956 7.38817 7.48494 7.59613 7.90673 8.17637 8.31490 8.58074 9.07395 9.65039 11.11248 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.006541 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.068889 B = 4279.415739 C = 5075.038121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.118 4.118 7 C 0.093 3.907 8 H 0.047 0.953 9 C 0.063 3.937 10 N -0.525 5.525 11 C 0.043 3.957 12 C -0.153 4.153 13 C -0.103 4.103 14 C 0.211 3.789 15 H 0.012 0.988 16 C -0.493 4.493 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 10.082 -6.325 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.016 4.016 8 H 0.065 0.935 9 C -0.066 4.066 10 N -0.250 5.250 11 C -0.085 4.085 12 C -0.192 4.192 13 C -0.142 4.142 14 C 0.105 3.895 15 H 0.030 0.970 16 C -0.532 4.532 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.932 10.030 -6.334 14.270 hybrid contribution -1.031 0.022 0.698 1.245 sum 6.901 10.053 -5.637 13.433 Atomic orbital electron populations 1.22437 0.87446 1.02947 0.99951 1.61902 1.07615 1.12818 1.44262 1.22039 0.95445 0.89656 0.99938 1.21575 0.94703 0.99600 0.99433 1.21606 0.99455 0.96667 0.98203 1.21956 0.94722 0.96350 1.02565 1.21598 0.94425 0.94549 0.90990 0.93463 1.22199 1.00268 0.92595 0.91540 1.63484 1.01402 1.26997 1.33097 1.22972 0.92552 0.94060 0.98965 1.22918 0.99928 0.96308 1.00029 1.22684 0.92176 1.01022 0.98306 1.20184 0.89812 0.84339 0.95134 0.96981 1.21012 1.09463 0.97479 1.25252 0.92082 1.24943 0.97759 0.95007 0.96584 1.69954 1.35828 1.03411 1.44348 0.86614 0.81704 0.77707 0.81668 1.20430 1.21450 1.20304 0.95629 0.92056 0.90330 0.91302 0.95257 0.91398 0.92140 0.92270 0.92439 0.89864 0.91940 0.95303 0.90522 0.92137 0.93684 0.93005 0.92774 0.91043 0.92591 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.16 60.06 0.55 0.84 16 2 N -0.54 -8.04 4.75 -234.92 -1.12 -9.16 16 3 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 4 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 5 C -0.12 -1.48 6.00 -26.61 -0.16 -1.64 16 6 C -0.12 -1.72 3.99 -26.65 -0.11 -1.82 16 7 C 0.09 1.53 2.12 -67.72 -0.14 1.39 16 8 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.06 1.22 4.16 -3.82 -0.02 1.21 16 10 N -0.52 -11.28 4.74 -224.45 -1.06 -12.35 16 11 C 0.04 0.79 4.81 -2.83 -0.01 0.78 16 12 C -0.15 -2.95 6.93 -24.91 -0.17 -3.12 16 13 C -0.10 -2.43 5.90 -24.34 -0.14 -2.57 16 14 C 0.21 5.32 2.21 -67.09 -0.15 5.17 16 15 H 0.01 0.34 7.81 -51.93 -0.41 -0.06 16 16 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.06 1.61 5.35 -17.82 -0.10 1.52 16 19 N -0.90 -25.68 12.28 55.43 0.68 -25.00 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.23 5.90 -51.93 -0.31 0.92 16 27 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.26 4.99 -51.93 -0.26 1.00 16 34 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 35 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 36 H 0.08 1.61 5.74 -51.93 -0.30 1.31 16 37 H 0.06 1.07 7.36 -51.93 -0.38 0.69 16 38 H 0.04 0.76 5.62 -51.93 -0.29 0.47 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.81 7.59 -51.93 -0.39 1.41 16 42 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -28.14 317.87 -10.42 -38.56 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.76 Total: -0.41 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.94 Total: -12.97 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -1.50 Total: -46.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.14 -10.42 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.866 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds