Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46842 * 110.99866 * 2 1 4 4 C 1.53043 * 109.52482 * 185.83664 * 3 2 1 5 5 C 1.53119 * 109.27625 * 300.82062 * 4 3 2 6 6 C 1.53114 * 109.16121 * 57.65090 * 5 4 3 7 7 C 1.46845 * 110.99685 * 124.20436 * 2 1 3 8 8 H 1.08999 * 109.46856 * 294.17158 * 7 2 1 9 9 C 1.53008 * 109.46250 * 54.15139 * 7 2 1 10 10 N 1.46896 * 109.47382 * 185.74716 * 9 7 2 11 11 C 1.47449 * 110.99882 * 281.74505 * 10 9 7 12 12 C 1.54318 * 107.22838 * 236.74047 * 11 10 9 13 13 C 1.55142 * 103.17871 * 337.62638 * 12 11 10 14 14 C 1.47836 * 111.00255 * 160.90003 * 10 9 7 15 15 H 1.08998 * 110.37550 * 27.53261 * 14 10 9 16 16 C 1.50706 * 110.37471 * 265.30541 * 14 10 9 17 17 H 1.08002 * 119.99749 * 359.97438 * 16 14 10 18 18 C 1.37871 * 120.00171 * 180.02562 * 16 14 10 19 19 N 1.31520 * 119.99927 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00096 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47258 * 59.99603 * 20 18 16 22 22 H 1.48504 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46993 * 299.99242 * 20 18 16 24 24 H 1.08996 * 109.47476 * 298.98175 * 1 2 3 25 25 H 1.09006 * 109.46755 * 58.98266 * 1 2 3 26 26 H 1.09000 * 109.47334 * 178.97744 * 1 2 3 27 27 H 1.09000 * 109.46586 * 305.85082 * 3 2 1 28 28 H 1.09004 * 109.46641 * 65.81923 * 3 2 1 29 29 H 1.09000 * 109.50269 * 60.76070 * 4 3 2 30 30 H 1.09000 * 109.50341 * 180.84011 * 4 3 2 31 31 H 1.08994 * 109.52503 * 177.55918 * 5 4 3 32 32 H 1.08997 * 109.52541 * 297.74704 * 5 4 3 33 33 H 1.09002 * 109.50521 * 182.40124 * 6 5 4 34 34 H 1.09006 * 109.50582 * 62.28531 * 6 5 4 35 35 H 1.08997 * 109.46971 * 65.74143 * 9 7 2 36 36 H 1.09004 * 109.46689 * 305.74455 * 9 7 2 37 37 H 1.08997 * 109.88984 * 117.33604 * 11 10 9 38 38 H 1.09002 * 110.02166 * 356.22307 * 11 10 9 39 39 H 1.09001 * 110.70742 * 96.10243 * 12 11 10 40 40 H 1.09006 * 110.70266 * 219.15613 * 12 11 10 41 41 H 1.09004 * 110.98651 * 153.83250 * 13 12 11 42 42 H 1.08997 * 110.98935 * 277.65039 * 13 12 11 43 43 H 0.97002 * 119.99828 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5370 1.0145 6 6 3.5181 -0.8713 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7325 -0.2707 2.0661 9 6 1.3890 -2.1755 1.1205 10 7 1.8067 -2.9005 2.3279 11 6 3.1877 -3.3992 2.1935 12 6 3.1450 -4.9268 2.4085 13 6 1.8361 -5.1340 3.2151 14 6 0.9147 -4.0498 2.5910 15 1 0.4787 -4.4127 1.6602 16 6 -0.1711 -3.6600 3.5607 17 1 -0.2081 -2.6550 3.9544 18 6 -1.1164 -4.5866 3.9460 19 7 -1.0710 -5.8106 3.4669 20 14 -2.4627 -4.1033 5.1475 21 1 -3.2628 -2.9918 4.5734 22 1 -3.3458 -5.2708 5.3973 23 1 -1.8500 -3.6630 6.4265 24 1 -0.3634 0.4979 0.8989 25 1 -0.3633 0.5296 -0.8808 26 1 -0.3634 -1.0275 -0.0183 27 1 1.5634 1.9257 -0.8330 28 1 1.7323 1.8609 0.9376 29 1 3.7814 0.8568 -1.0905 30 1 3.9098 2.3513 -0.1317 31 1 5.1996 0.4715 0.8908 32 1 3.8886 1.0355 1.9561 33 1 3.9098 -1.4302 1.8709 34 1 3.7813 -1.3836 0.0955 35 1 1.7346 -2.7119 0.2368 36 1 0.3017 -2.1019 1.0988 37 1 3.8242 -2.9363 2.9477 38 1 3.5702 -3.1754 1.1977 39 1 3.0959 -5.4492 1.4531 40 1 4.0091 -5.2593 2.9839 41 1 1.4325 -6.1338 3.0543 42 1 1.9976 -4.9459 4.2765 43 1 -1.7364 -6.4624 3.7377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = -12.732174 kcal Electronic energy + Delta-G solvation = -19991.772703 eV Core-core repulsion = 17263.606290 eV Total energy + Delta-G solvation = -2728.166413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71428 -39.01267 -34.85053 -34.54998 -33.57916 -31.00084 -29.85671 -27.71069 -26.89036 -25.87689 -23.75196 -22.42498 -21.63285 -21.00200 -20.46500 -18.47136 -17.17119 -16.63644 -16.39234 -16.22947 -15.83510 -15.30116 -14.96979 -14.90854 -14.25889 -14.14385 -13.99217 -13.77367 -13.30687 -13.17327 -13.03747 -12.88803 -12.61350 -12.55650 -12.49973 -12.24910 -11.85090 -11.78626 -11.73989 -11.56899 -11.37531 -11.04879 -10.95555 -10.84547 -10.48687 -9.27584 -8.94793 -8.11927 -6.20495 1.40206 1.41769 1.49677 2.41520 2.86553 3.17186 3.57177 3.85543 3.92272 3.97280 4.09139 4.18237 4.24592 4.37990 4.40248 4.49097 4.56542 4.59345 4.64729 4.71615 4.80518 4.86197 4.89265 4.93817 4.99242 5.01542 5.08185 5.11801 5.14883 5.17417 5.28613 5.35220 5.37680 5.52262 5.54852 5.63911 5.75054 6.09286 6.19366 6.24524 6.54342 6.64292 6.90622 7.47303 8.95795 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.006541 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.068889 B = 4279.415739 C = 5075.038121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.115 4.115 7 C 0.103 3.897 8 H 0.024 0.976 9 C 0.069 3.931 10 N -0.535 5.535 11 C 0.045 3.955 12 C -0.142 4.142 13 C -0.100 4.100 14 C 0.212 3.788 15 H -0.025 1.025 16 C -0.511 4.511 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.017 0.983 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 11.686 -6.719 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.006 4.006 8 H 0.042 0.958 9 C -0.060 4.060 10 N -0.260 5.260 11 C -0.083 4.083 12 C -0.180 4.180 13 C -0.139 4.139 14 C 0.106 3.894 15 H -0.007 1.007 16 C -0.549 4.549 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.036 0.964 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.451 11.653 -6.736 16.447 hybrid contribution -1.519 -0.461 0.779 1.768 sum 7.932 11.192 -5.957 14.955 Atomic orbital electron populations 1.22422 0.87565 1.01906 1.00757 1.61951 1.07672 1.14410 1.43019 1.22191 0.96672 0.88061 1.00468 1.21580 0.93404 1.00937 0.98943 1.21594 1.00578 0.94917 0.98531 1.21899 0.92818 0.98241 1.02273 1.21404 0.95970 0.92472 0.90723 0.95776 1.22142 0.98977 0.94292 0.90548 1.63413 1.02346 1.25708 1.34488 1.23066 0.90915 0.93533 1.00741 1.22866 0.98363 0.96930 0.99882 1.22471 0.94430 0.99001 0.97979 1.19976 0.90355 0.86096 0.93006 1.00696 1.21254 1.10830 0.96997 1.25853 0.93299 1.25686 0.99839 0.94942 0.98167 1.70071 1.36560 1.04205 1.45379 0.85642 0.79029 0.77578 0.79556 1.19947 1.20751 1.19733 0.96390 0.89544 0.92419 0.89464 0.95733 0.91255 0.89642 0.90219 0.92807 0.90451 0.91803 0.95551 0.93172 0.90529 0.91602 0.92410 0.89825 0.93493 0.94000 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.16 127.69 1.17 1.79 16 2 N -0.55 -15.69 4.75 -897.15 -4.26 -19.94 16 3 C 0.05 1.22 5.46 86.33 0.47 1.69 16 4 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 5 C -0.12 -2.54 6.00 30.67 0.18 -2.35 16 6 C -0.11 -3.11 3.99 30.65 0.12 -2.99 16 7 C 0.10 3.37 2.12 44.94 0.10 3.47 16 8 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 9 C 0.07 2.75 4.16 86.31 0.36 3.11 16 10 N -0.53 -23.33 4.74 -864.02 -4.09 -27.43 16 11 C 0.04 1.60 4.81 86.65 0.42 2.02 16 12 C -0.14 -5.29 6.93 31.78 0.22 -5.07 16 13 C -0.10 -4.81 5.90 32.14 0.19 -4.62 16 14 C 0.21 11.11 2.21 44.81 0.10 11.21 16 15 H -0.02 -1.44 7.81 -2.39 -0.02 -1.46 16 16 C -0.51 -29.24 8.84 25.60 0.23 -29.01 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 18 C 0.01 0.70 5.35 84.65 0.45 1.15 16 19 N -0.92 -54.36 12.28 21.45 0.26 -54.10 16 20 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.06 1.88 5.90 -2.39 -0.01 1.87 16 27 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 28 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.18 4.99 -2.39 -0.01 2.16 16 34 H 0.06 1.72 7.83 -2.38 -0.02 1.70 16 35 H 0.03 1.04 7.69 -2.39 -0.02 1.02 16 36 H 0.05 2.23 5.74 -2.39 -0.01 2.22 16 37 H 0.08 2.52 7.36 -2.39 -0.02 2.51 16 38 H 0.07 2.09 5.62 -2.39 -0.01 2.08 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.05 2.45 7.59 -2.39 -0.02 2.43 16 42 H 0.04 2.09 8.06 -2.39 -0.02 2.07 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -62.25 317.87 -0.92 -63.17 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.95 Total: 12.92 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.19 Total: -21.55 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -8.09 Total: -101.47 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.25 -0.92 -63.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.434 kcal (2) G-P(sol) polarization free energy of solvation -62.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds