Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00009 * 2 1 4 4 C 1.53039 * 109.52318 * 174.16379 * 3 2 1 5 5 C 1.53110 * 109.28318 * 59.17833 * 4 3 2 6 6 C 1.53122 * 109.16295 * 302.35008 * 5 4 3 7 7 C 1.46853 * 111.00065 * 235.79143 * 2 1 3 8 8 H 1.08997 * 109.45347 * 65.82551 * 7 2 1 9 9 C 1.52999 * 109.46266 * 305.85420 * 7 2 1 10 10 N 1.46893 * 109.47171 * 177.28862 * 9 7 2 11 11 C 1.47902 * 111.00187 * 85.64967 * 10 9 7 12 12 C 1.53999 * 107.05701 * 214.15716 * 11 10 9 13 13 C 1.54593 * 105.14130 * 1.22239 * 12 11 10 14 14 C 1.48536 * 111.00055 * 328.25164 * 10 9 7 15 15 H 1.09005 * 110.66818 * 41.28641 * 14 10 9 16 16 C 1.50700 * 110.66707 * 278.15685 * 14 10 9 17 17 H 1.07998 * 120.00386 * 0.03444 * 16 14 10 18 18 C 1.37884 * 119.99852 * 180.02562 * 16 14 10 19 19 N 1.31515 * 119.99821 * 3.70800 * 18 16 14 20 20 Si 1.86799 * 119.99979 * 183.70293 * 18 16 14 21 21 H 1.48499 * 109.46991 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46937 * 119.99864 * 20 18 16 23 23 H 1.48500 * 109.47328 * 240.00100 * 20 18 16 24 24 H 1.08999 * 109.47060 * 192.27531 * 1 2 3 25 25 H 1.08999 * 109.47027 * 312.27427 * 1 2 3 26 26 H 1.08999 * 109.47339 * 72.27695 * 1 2 3 27 27 H 1.08998 * 109.46024 * 54.14804 * 3 2 1 28 28 H 1.09000 * 109.46450 * 294.17605 * 3 2 1 29 29 H 1.09005 * 109.50097 * 299.23543 * 4 3 2 30 30 H 1.09004 * 109.50102 * 179.12470 * 4 3 2 31 31 H 1.09000 * 109.53095 * 182.44102 * 5 4 3 32 32 H 1.09002 * 109.52308 * 62.25254 * 5 4 3 33 33 H 1.09005 * 109.49828 * 297.71053 * 6 5 4 34 34 H 1.08998 * 109.50648 * 177.59112 * 6 5 4 35 35 H 1.09003 * 109.46886 * 57.28559 * 9 7 2 36 36 H 1.08995 * 109.47092 * 297.28819 * 9 7 2 37 37 H 1.09002 * 109.91519 * 333.50798 * 11 10 9 38 38 H 1.08998 * 109.91740 * 94.60667 * 11 10 9 39 39 H 1.08997 * 110.30719 * 120.14511 * 12 11 10 40 40 H 1.09003 * 110.30227 * 242.20909 * 12 11 10 41 41 H 1.09001 * 110.72542 * 140.31878 * 13 12 11 42 42 H 1.09004 * 110.72525 * 263.60065 * 13 12 11 43 43 H 0.96997 * 119.99465 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8715 -1.0210 7 6 1.9953 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0659 9 6 1.3891 -2.1755 -1.1205 10 7 1.8651 -2.9253 -2.2906 11 6 3.1673 -3.5695 -2.0136 12 6 3.9679 -3.5539 -3.3290 13 6 3.0540 -2.8372 -4.3494 14 6 2.0987 -2.0194 -3.4443 15 1 2.5754 -1.0953 -3.1175 16 6 0.8059 -1.7278 -4.1618 17 1 -0.1173 -2.1642 -3.8102 18 6 0.8017 -0.9036 -5.2672 19 7 1.9346 -0.4307 -5.7391 20 14 -0.8129 -0.4589 -6.0946 21 1 -1.9346 -1.1145 -5.3753 22 1 -0.9973 1.0142 -6.0604 23 1 -0.7905 -0.9225 -7.5052 24 1 -0.3633 -1.0042 0.2185 25 1 -0.3633 0.6913 0.7604 26 1 -0.3634 0.3128 -0.9789 27 1 1.5634 1.9256 0.8330 28 1 1.7325 1.8608 -0.9376 29 1 3.7814 0.8567 1.0906 30 1 3.9099 2.3512 0.1310 31 1 5.1998 0.4714 -0.8906 32 1 3.8887 1.0355 -1.9560 33 1 3.7814 -1.3836 -0.0954 34 1 3.9099 -1.4302 -1.8709 35 1 0.3021 -2.1025 -1.1532 36 1 1.6912 -2.6929 -0.2099 37 1 3.7026 -3.0099 -1.2464 38 1 3.0108 -4.5962 -1.6828 39 1 4.8977 -3.0001 -3.1994 40 1 4.1773 -4.5723 -3.6564 41 1 3.6366 -2.1766 -4.9916 42 1 2.4967 -3.5615 -4.9435 43 1 1.9316 0.1487 -6.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = 16.542435 kcal Electronic energy + Delta-G solvation = -20755.798307 eV Core-core repulsion = 18028.901337 eV Total energy + Delta-G solvation = -2726.896970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73125 -37.22156 -33.31123 -32.71812 -31.96220 -29.29894 -28.25163 -26.32646 -25.08111 -24.08077 -22.51918 -21.35386 -20.12712 -19.27587 -18.61679 -16.56351 -15.53592 -15.18957 -14.60775 -14.46483 -14.35318 -13.91687 -13.59080 -13.33835 -13.13962 -12.68841 -12.15526 -12.08705 -11.85890 -11.48296 -11.32500 -11.18003 -11.02808 -10.84020 -10.64849 -10.62352 -10.43592 -10.30868 -10.12109 -9.95712 -9.67930 -9.59104 -9.51828 -8.91828 -8.39221 -7.84930 -7.08978 -6.02212 -4.01735 3.28598 3.37194 3.42093 4.30013 4.42766 5.11357 5.16029 5.20661 5.29970 5.35160 5.46474 5.64448 5.72971 5.74450 5.80996 5.85361 5.92387 5.95466 6.02767 6.11032 6.15468 6.24939 6.25465 6.27264 6.37974 6.44937 6.50477 6.57488 6.59193 6.71478 6.73815 6.81826 7.14894 7.19315 7.44545 7.48997 7.51983 7.64861 7.86682 8.13109 8.29263 8.55896 9.04577 9.61829 11.07302 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.009628 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.473539 B = 2907.580934 C = 3579.054980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.118 4.118 7 C 0.049 3.951 8 H 0.077 0.923 9 C 0.066 3.934 10 N -0.512 5.512 11 C 0.024 3.976 12 C -0.138 4.138 13 C -0.103 4.103 14 C 0.189 3.811 15 H 0.037 0.963 16 C -0.493 4.493 17 H 0.061 0.939 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 1.332 9.852 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.060 4.060 8 H 0.095 0.905 9 C -0.064 4.064 10 N -0.236 5.236 11 C -0.104 4.104 12 C -0.176 4.176 13 C -0.142 4.142 14 C 0.083 3.917 15 H 0.054 0.946 16 C -0.532 4.532 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.211 1.211 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.751 0.818 10.021 10.424 hybrid contribution -0.497 1.317 -1.099 1.786 sum 2.254 2.135 8.921 9.446 Atomic orbital electron populations 1.22353 0.87859 1.02053 1.00157 1.61994 1.07297 1.12750 1.44386 1.22047 0.95402 0.89901 0.99940 1.21548 0.94810 0.99529 0.99159 1.21580 0.99183 0.96580 0.98608 1.21966 0.95025 0.96688 1.01897 1.22488 0.94450 0.96459 0.92596 0.90530 1.22161 1.00027 0.90774 0.93394 1.65089 1.24081 1.29527 1.04944 1.23056 0.91399 0.98980 0.97011 1.22500 0.98303 1.00031 0.96798 1.22448 0.96587 0.98156 0.96967 1.20688 0.95177 0.90237 0.85599 0.94609 1.21026 0.93539 1.27378 1.11242 0.92125 1.24917 0.96093 0.96191 0.96969 1.69970 1.24930 1.34187 1.24148 0.86565 0.84284 0.77946 0.79408 1.19725 1.21277 1.21099 0.91162 0.92467 0.95047 0.91543 0.95016 0.91657 0.92223 0.92444 0.91899 0.92253 0.90001 0.91192 0.92632 0.93782 0.92512 0.93179 0.92912 0.91277 0.92806 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.85 60.06 0.53 0.90 16 2 N -0.54 -8.92 4.75 -234.93 -1.12 -10.04 16 3 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 4 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 5 C -0.12 -1.92 6.00 -26.61 -0.16 -2.07 16 6 C -0.12 -2.05 3.35 -26.65 -0.09 -2.14 16 7 C 0.05 0.92 1.35 -67.72 -0.09 0.83 16 8 H 0.08 1.77 5.86 -51.93 -0.30 1.47 16 9 C 0.07 1.27 4.88 -3.83 -0.02 1.26 16 10 N -0.51 -11.02 5.22 -223.99 -1.17 -12.18 16 11 C 0.02 0.45 5.66 -2.75 -0.02 0.43 16 12 C -0.14 -2.64 6.41 -25.37 -0.16 -2.80 16 13 C -0.10 -2.40 5.89 -24.87 -0.15 -2.55 16 14 C 0.19 4.56 1.14 -66.94 -0.08 4.49 16 15 H 0.04 0.92 4.01 -51.93 -0.21 0.71 16 16 C -0.49 -13.35 8.48 -34.44 -0.29 -13.64 16 17 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 18 C 0.06 1.62 5.38 -17.82 -0.10 1.53 16 19 N -0.89 -25.06 12.26 55.43 0.68 -24.38 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.07 1.05 6.66 -51.93 -0.35 0.70 16 25 H 0.06 0.75 7.94 -51.93 -0.41 0.33 16 26 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 34 H 0.08 1.55 3.96 -51.93 -0.21 1.35 16 35 H 0.07 1.40 6.35 -51.93 -0.33 1.07 16 36 H 0.06 1.00 7.83 -51.93 -0.41 0.59 16 37 H 0.04 0.77 4.78 -51.93 -0.25 0.52 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.73 7.56 -51.93 -0.39 1.34 16 42 H 0.05 1.33 8.05 -51.93 -0.42 0.91 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -27.56 309.91 -10.18 -37.74 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.43 Total: 2.56 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.80 Total: -14.69 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.60 Total: -46.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.56 -10.18 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.280 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds