Wall clock time and date at job start Mon Mar 30 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00009 * 2 1 4 4 C 1.53039 * 109.52318 * 174.16379 * 3 2 1 5 5 C 1.53110 * 109.28318 * 59.17833 * 4 3 2 6 6 C 1.53122 * 109.16295 * 302.35008 * 5 4 3 7 7 C 1.46853 * 111.00065 * 235.79143 * 2 1 3 8 8 H 1.08997 * 109.45347 * 65.82551 * 7 2 1 9 9 C 1.52999 * 109.46266 * 305.85420 * 7 2 1 10 10 N 1.46893 * 109.47171 * 177.28862 * 9 7 2 11 11 C 1.47902 * 111.00187 * 85.64967 * 10 9 7 12 12 C 1.53999 * 107.05701 * 214.15716 * 11 10 9 13 13 C 1.54593 * 105.14130 * 1.22239 * 12 11 10 14 14 C 1.48536 * 111.00055 * 328.25164 * 10 9 7 15 15 H 1.09005 * 110.66818 * 41.28641 * 14 10 9 16 16 C 1.50700 * 110.66707 * 278.15685 * 14 10 9 17 17 H 1.07998 * 120.00386 * 0.03444 * 16 14 10 18 18 C 1.37884 * 119.99852 * 180.02562 * 16 14 10 19 19 N 1.31515 * 119.99821 * 3.70800 * 18 16 14 20 20 Si 1.86799 * 119.99979 * 183.70293 * 18 16 14 21 21 H 1.48499 * 109.46991 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46937 * 119.99864 * 20 18 16 23 23 H 1.48500 * 109.47328 * 240.00100 * 20 18 16 24 24 H 1.08999 * 109.47060 * 192.27531 * 1 2 3 25 25 H 1.08999 * 109.47027 * 312.27427 * 1 2 3 26 26 H 1.08999 * 109.47339 * 72.27695 * 1 2 3 27 27 H 1.08998 * 109.46024 * 54.14804 * 3 2 1 28 28 H 1.09000 * 109.46450 * 294.17605 * 3 2 1 29 29 H 1.09005 * 109.50097 * 299.23543 * 4 3 2 30 30 H 1.09004 * 109.50102 * 179.12470 * 4 3 2 31 31 H 1.09000 * 109.53095 * 182.44102 * 5 4 3 32 32 H 1.09002 * 109.52308 * 62.25254 * 5 4 3 33 33 H 1.09005 * 109.49828 * 297.71053 * 6 5 4 34 34 H 1.08998 * 109.50648 * 177.59112 * 6 5 4 35 35 H 1.09003 * 109.46886 * 57.28559 * 9 7 2 36 36 H 1.08995 * 109.47092 * 297.28819 * 9 7 2 37 37 H 1.09002 * 109.91519 * 333.50798 * 11 10 9 38 38 H 1.08998 * 109.91740 * 94.60667 * 11 10 9 39 39 H 1.08997 * 110.30719 * 120.14511 * 12 11 10 40 40 H 1.09003 * 110.30227 * 242.20909 * 12 11 10 41 41 H 1.09001 * 110.72542 * 140.31878 * 13 12 11 42 42 H 1.09004 * 110.72525 * 263.60065 * 13 12 11 43 43 H 0.96997 * 119.99465 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5181 -0.8715 -1.0210 7 6 1.9953 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0659 9 6 1.3891 -2.1755 -1.1205 10 7 1.8651 -2.9253 -2.2906 11 6 3.1673 -3.5695 -2.0136 12 6 3.9679 -3.5539 -3.3290 13 6 3.0540 -2.8372 -4.3494 14 6 2.0987 -2.0194 -3.4443 15 1 2.5754 -1.0953 -3.1175 16 6 0.8059 -1.7278 -4.1618 17 1 -0.1173 -2.1642 -3.8102 18 6 0.8017 -0.9036 -5.2672 19 7 1.9346 -0.4307 -5.7391 20 14 -0.8129 -0.4589 -6.0946 21 1 -1.9346 -1.1145 -5.3753 22 1 -0.9973 1.0142 -6.0604 23 1 -0.7905 -0.9225 -7.5052 24 1 -0.3633 -1.0042 0.2185 25 1 -0.3633 0.6913 0.7604 26 1 -0.3634 0.3128 -0.9789 27 1 1.5634 1.9256 0.8330 28 1 1.7325 1.8608 -0.9376 29 1 3.7814 0.8567 1.0906 30 1 3.9099 2.3512 0.1310 31 1 5.1998 0.4714 -0.8906 32 1 3.8887 1.0355 -1.9560 33 1 3.7814 -1.3836 -0.0954 34 1 3.9099 -1.4302 -1.8709 35 1 0.3021 -2.1025 -1.1532 36 1 1.6912 -2.6929 -0.2099 37 1 3.7026 -3.0099 -1.2464 38 1 3.0108 -4.5962 -1.6828 39 1 4.8977 -3.0001 -3.1994 40 1 4.1773 -4.5723 -3.6564 41 1 3.6366 -2.1766 -4.9916 42 1 2.4967 -3.5615 -4.9435 43 1 1.9316 0.1487 -6.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:16 Heat of formation + Delta-G solvation = -1.644101 kcal Electronic energy + Delta-G solvation = -20756.586935 eV Core-core repulsion = 18028.901337 eV Total energy + Delta-G solvation = -2727.685598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24289 -38.72721 -34.75117 -34.59135 -33.52601 -30.75893 -30.13441 -27.64659 -26.69394 -25.94464 -23.82681 -22.85311 -21.73539 -20.78297 -20.22799 -18.47364 -17.17775 -16.79622 -16.30439 -15.98635 -15.84329 -15.30383 -15.05317 -14.80293 -14.75887 -14.09478 -13.85460 -13.52706 -13.35912 -13.04795 -12.96260 -12.83353 -12.55723 -12.51952 -12.45020 -12.23991 -11.95057 -11.78372 -11.60311 -11.45651 -11.36278 -11.31661 -11.00666 -10.85701 -10.46818 -9.27023 -8.78064 -8.12930 -6.18287 1.34115 1.37082 1.48010 2.39914 2.97313 3.17646 3.58968 3.85702 3.92542 3.97913 4.12175 4.17411 4.25291 4.37155 4.42158 4.49862 4.55222 4.59832 4.66866 4.70239 4.83024 4.86472 4.96041 4.96722 4.99665 5.04012 5.07442 5.10484 5.12999 5.21845 5.28792 5.29701 5.43275 5.49316 5.60529 5.69909 5.76301 6.09491 6.19930 6.23660 6.54503 6.67247 6.93711 7.48295 8.95220 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.009628 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.473539 B = 2907.580934 C = 3579.054980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.051 3.949 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.114 4.114 7 C 0.062 3.938 8 H 0.024 0.976 9 C 0.069 3.931 10 N -0.529 5.529 11 C 0.026 3.974 12 C -0.128 4.128 13 C -0.102 4.102 14 C 0.195 3.805 15 H 0.022 0.978 16 C -0.506 4.506 17 H 0.044 0.956 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.280 1.280 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.004 0.996 27 H 0.094 0.906 28 H 0.007 0.993 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 1.194 12.006 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.048 4.048 8 H 0.042 0.958 9 C -0.060 4.060 10 N -0.253 5.253 11 C -0.102 4.102 12 C -0.166 4.166 13 C -0.141 4.141 14 C 0.088 3.912 15 H 0.039 0.961 16 C -0.545 4.545 17 H 0.062 0.938 18 C -0.183 4.183 19 N -0.558 5.558 20 Si 0.772 3.228 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.206 1.206 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.022 0.978 27 H 0.112 0.888 28 H 0.025 0.975 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.331 0.675 12.187 12.652 hybrid contribution -0.706 1.364 -1.748 2.327 sum 2.625 2.038 10.439 10.956 Atomic orbital electron populations 1.22408 0.87353 1.03039 0.99576 1.62077 1.07806 1.13514 1.42466 1.22202 0.96738 0.89004 0.99780 1.21538 0.93488 1.00620 0.98682 1.21576 1.00591 0.95607 0.98144 1.21891 0.93694 0.97772 1.01775 1.22184 0.95702 0.95780 0.91098 0.95842 1.22129 0.99252 0.91289 0.93295 1.64968 1.25996 1.29250 1.05096 1.23129 0.90054 0.99886 0.97131 1.22433 0.97905 1.00762 0.95451 1.22263 0.96962 0.97501 0.97365 1.20434 0.93815 0.90306 0.86624 0.96061 1.21257 0.94243 1.27337 1.11643 0.93797 1.25568 0.98874 0.96252 0.97624 1.70069 1.26451 1.34715 1.24519 0.85695 0.80941 0.77704 0.78488 1.19534 1.20847 1.20599 0.90790 0.89543 0.97759 0.88795 0.97496 0.90095 0.90085 0.90305 0.94937 0.90454 0.91874 0.92616 0.90503 0.92077 0.90616 0.91700 0.90852 0.93758 0.95063 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 8.85 127.69 1.13 1.86 16 2 N -0.53 -17.03 4.75 -897.18 -4.26 -21.29 16 3 C 0.05 1.45 5.46 86.33 0.47 1.92 16 4 C -0.11 -2.65 6.09 30.64 0.19 -2.47 16 5 C -0.12 -3.67 6.00 30.67 0.18 -3.49 16 6 C -0.11 -3.82 3.35 30.65 0.10 -3.72 16 7 C 0.06 2.33 1.35 44.94 0.06 2.39 16 8 H 0.02 1.15 5.86 -2.39 -0.01 1.14 16 9 C 0.07 2.66 4.88 86.30 0.42 3.08 16 10 N -0.53 -22.69 5.22 -862.56 -4.50 -27.19 16 11 C 0.03 0.91 5.66 86.45 0.49 1.40 16 12 C -0.13 -4.70 6.41 31.47 0.20 -4.50 16 13 C -0.10 -4.88 5.89 31.80 0.19 -4.70 16 14 C 0.19 9.71 1.14 44.52 0.05 9.76 16 15 H 0.02 1.16 4.01 -2.38 -0.01 1.15 16 16 C -0.51 -28.48 8.48 25.60 0.22 -28.26 16 17 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 18 C 0.02 0.87 5.38 84.66 0.46 1.33 16 19 N -0.92 -53.32 12.26 21.45 0.26 -53.06 16 20 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H 0.07 2.15 6.66 -2.39 -0.02 2.13 16 25 H 0.09 2.07 7.94 -2.39 -0.02 2.05 16 26 H 0.00 0.13 8.10 -2.39 -0.02 0.11 16 27 H 0.09 2.18 7.99 -2.39 -0.02 2.16 16 28 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 2.32 7.73 -2.38 -0.02 2.30 16 34 H 0.06 2.35 3.96 -2.39 -0.01 2.34 16 35 H 0.06 2.26 6.35 -2.39 -0.02 2.24 16 36 H 0.08 2.60 7.83 -2.39 -0.02 2.58 16 37 H 0.06 1.97 4.78 -2.39 -0.01 1.96 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.06 2.20 7.96 -2.39 -0.02 2.18 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.04 2.30 7.56 -2.39 -0.02 2.28 16 42 H 0.03 1.58 8.05 -2.38 -0.02 1.56 16 43 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -61.40 309.91 -1.34 -62.74 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.97 Total: 17.20 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.16 Total: -25.38 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -8.49 Total: -101.54 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.40 -1.34 -62.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.098 kcal (2) G-P(sol) polarization free energy of solvation -61.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds