Wall clock time and date at job start Mon Mar 30 2020 03:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48670 * 111.10902 * 2 1 4 4 C 1.54377 * 104.67566 * 201.10041 * 3 2 1 5 5 C 1.54255 * 105.05948 * 23.76730 * 4 3 2 6 6 C 1.48566 * 111.00248 * 244.58541 * 2 1 3 7 7 H 1.08997 * 110.41118 * 40.13792 * 6 2 1 8 8 C 1.53006 * 110.40660 * 277.81647 * 6 2 1 9 9 C 1.52998 * 109.46614 * 179.27295 * 8 6 2 10 10 N 1.46902 * 109.47101 * 185.25095 * 9 8 6 11 11 C 1.48559 * 110.99769 * 285.42037 * 10 9 8 12 12 C 1.54381 * 104.59527 * 200.95468 * 11 10 9 13 13 C 1.54264 * 105.05788 * 23.85582 * 12 11 10 14 14 C 1.48560 * 111.00355 * 170.00000 * 10 9 8 15 15 H 1.09004 * 110.50794 * 40.21368 * 14 10 9 16 16 C 1.50695 * 110.40991 * 277.81995 * 14 10 9 17 17 H 1.07995 * 120.00441 * 3.37413 * 16 14 10 18 18 C 1.37879 * 119.99817 * 183.09591 * 16 14 10 19 19 N 1.31512 * 119.99805 * 0.27368 * 18 16 14 20 20 Si 1.86804 * 120.00083 * 180.27821 * 18 16 14 21 21 H 1.48492 * 109.47156 * 59.99628 * 20 18 16 22 22 H 1.48498 * 109.46854 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46715 * 299.99575 * 20 18 16 24 24 H 1.09001 * 109.46983 * 181.19051 * 1 2 3 25 25 H 1.08999 * 109.47085 * 301.19094 * 1 2 3 26 26 H 1.09003 * 109.47496 * 61.19391 * 1 2 3 27 27 H 1.09004 * 110.44437 * 82.25774 * 3 2 1 28 28 H 1.09001 * 110.30721 * 319.87034 * 3 2 1 29 29 H 1.09004 * 110.32335 * 264.87404 * 4 3 2 30 30 H 1.08999 * 110.41093 * 142.71429 * 4 3 2 31 31 H 1.09002 * 110.32562 * 241.10379 * 5 4 3 32 32 H 1.09005 * 110.40734 * 118.94449 * 5 4 3 33 33 H 1.08998 * 109.47004 * 59.27483 * 8 6 2 34 34 H 1.08991 * 109.47245 * 299.27450 * 8 6 2 35 35 H 1.08997 * 109.47179 * 65.25079 * 9 8 6 36 36 H 1.09001 * 109.47162 * 305.25048 * 9 8 6 37 37 H 1.09006 * 110.41126 * 82.18427 * 11 10 9 38 38 H 1.08990 * 110.51428 * 319.78663 * 11 10 9 39 39 H 1.08992 * 110.32871 * 264.96043 * 12 11 10 40 40 H 1.09000 * 110.41374 * 142.78960 * 12 11 10 41 41 H 1.09003 * 110.32318 * 241.10437 * 13 12 11 42 42 H 1.08998 * 110.32722 * 118.89217 * 13 12 11 43 43 H 0.97005 * 120.00154 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3869 0.0000 4 6 3.4450 1.2500 -0.5376 5 6 3.4431 -0.0540 -1.3616 6 6 2.0014 -0.5952 -1.2527 7 1 1.4086 -0.2729 -2.1087 8 6 2.0106 -2.1222 -1.1560 9 6 2.5451 -2.7127 -2.4624 10 7 2.4367 -4.1770 -2.4183 11 6 3.4746 -4.7611 -1.5303 12 6 3.5963 -6.2304 -1.9882 13 6 3.0992 -6.2376 -3.4485 14 6 2.7188 -4.7721 -3.7500 15 1 3.5491 -4.2552 -4.2311 16 6 1.4906 -4.7164 -4.6213 17 1 0.5937 -4.2353 -4.2603 18 6 1.5136 -5.2748 -5.8817 19 7 2.6059 -5.8607 -6.3215 20 14 -0.0064 -5.1990 -6.9649 21 1 -0.3710 -3.7801 -7.2077 22 1 0.2759 -5.8659 -8.2613 23 1 -1.1323 -5.8904 -6.2868 24 1 -0.3633 -1.0275 0.0214 25 1 -0.3633 0.5322 0.8791 26 1 -0.3634 0.4952 -0.9005 27 1 2.0131 1.7917 1.0121 28 1 1.4115 2.0213 -0.6589 29 1 4.1519 1.1746 0.2887 30 1 3.6959 2.0992 -1.1732 31 1 4.1490 -0.7695 -0.9398 32 1 3.6918 0.1536 -2.4024 33 1 0.9961 -2.4814 -0.9832 34 1 2.6507 -2.4301 -0.3294 35 1 3.5900 -2.4293 -2.5884 36 1 1.9613 -2.3302 -3.2996 37 1 3.1552 -4.7127 -0.4892 38 1 4.4244 -4.2425 -1.6602 39 1 2.9680 -6.8726 -1.3712 40 1 4.6346 -6.5588 -1.9402 41 1 2.2267 -6.8833 -3.5482 42 1 3.8939 -6.5677 -4.1174 43 1 2.6223 -6.2532 -7.2084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259991982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:11 Heat of formation + Delta-G solvation = -2.261117 kcal Electronic energy + Delta-G solvation = -19390.642658 eV Core-core repulsion = 16662.930304 eV Total energy + Delta-G solvation = -2727.712353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17771 -37.74826 -33.35175 -32.38483 -32.08333 -29.77682 -28.11931 -26.15790 -25.39922 -24.24063 -22.23521 -20.95451 -20.14758 -19.46826 -19.17634 -16.36470 -15.99865 -15.47174 -14.87852 -14.63479 -14.31821 -14.14393 -13.75916 -13.68410 -13.03395 -12.56654 -12.26826 -12.16842 -11.98137 -11.55908 -11.47366 -11.29238 -11.18849 -11.11564 -10.90332 -10.64613 -10.54573 -10.44829 -10.33708 -10.03844 -9.96542 -9.57101 -9.50925 -8.89471 -8.48137 -8.39121 -7.31149 -5.98945 -3.99664 3.34541 3.38711 3.41974 3.98571 4.44716 4.63719 4.74499 4.98809 5.09759 5.24179 5.33895 5.36138 5.45221 5.52560 5.60502 5.66732 5.75096 5.76912 5.84916 5.90051 5.91900 5.96295 6.04947 6.10227 6.18009 6.23016 6.37888 6.40912 6.61530 6.64374 6.73831 6.75501 6.93990 7.07336 7.12892 7.21337 7.43290 7.64829 7.87960 8.11902 8.29355 8.56840 9.05365 9.63844 11.11027 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.005511 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.016328 B = 5079.258250 C = 5760.529786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.031 3.969 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.064 3.936 7 H 0.053 0.947 8 C -0.093 4.093 9 C 0.056 3.944 10 N -0.508 5.508 11 C 0.034 3.966 12 C -0.131 4.131 13 C -0.094 4.094 14 C 0.202 3.798 15 H 0.007 0.993 16 C -0.497 4.497 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 10.852 10.759 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.237 5.237 3 C -0.097 4.097 4 C -0.163 4.163 5 C -0.159 4.159 6 C -0.045 4.045 7 H 0.071 0.929 8 C -0.132 4.132 9 C -0.074 4.074 10 N -0.232 5.232 11 C -0.094 4.094 12 C -0.169 4.169 13 C -0.133 4.133 14 C 0.095 3.905 15 H 0.024 0.976 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.564 10.340 11.251 15.291 hybrid contribution -0.277 0.689 -1.678 1.835 sum 0.287 11.029 9.572 14.607 Atomic orbital electron populations 1.22500 0.88110 1.02624 1.00220 1.65312 1.08065 1.14515 1.35819 1.23109 0.95378 0.90496 1.00686 1.22285 0.96447 0.97873 0.99651 1.22368 0.96743 0.96665 1.00077 1.22726 0.95029 0.96178 0.90544 0.92946 1.21434 1.02221 0.91396 0.98121 1.22065 0.98250 0.90055 0.97005 1.65386 1.43624 1.03544 1.10640 1.23010 0.93457 0.95458 0.97514 1.22404 0.99336 0.95647 0.99512 1.22191 1.00050 0.99642 0.91439 1.20177 0.95660 0.90334 0.84283 0.97558 1.20973 0.97956 1.36292 0.98346 0.92084 1.24940 0.96088 0.95453 0.97757 1.69967 1.26933 1.37904 1.18539 0.86615 0.83410 0.78119 0.79563 1.20445 1.21426 1.20222 0.90806 0.91732 0.95495 0.90475 0.94140 0.91232 0.91626 0.90878 0.91305 0.91446 0.91994 0.95967 0.90821 0.92041 0.95533 0.92638 0.93281 0.92349 0.92389 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.42 60.06 0.57 0.73 16 2 N -0.51 -6.63 5.34 -230.25 -1.23 -7.86 16 3 C 0.03 0.34 6.50 -2.12 -0.01 0.33 16 4 C -0.12 -1.30 7.00 -25.35 -0.18 -1.48 16 5 C -0.12 -1.51 5.72 -25.36 -0.15 -1.65 16 6 C 0.06 0.89 2.33 -66.07 -0.15 0.74 16 7 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 8 C -0.09 -1.50 4.89 -26.73 -0.13 -1.63 16 9 C 0.06 1.07 4.53 -3.82 -0.02 1.05 16 10 N -0.51 -11.13 5.01 -223.51 -1.12 -12.25 16 11 C 0.03 0.66 5.94 -2.18 -0.01 0.64 16 12 C -0.13 -2.58 7.00 -25.35 -0.18 -2.76 16 13 C -0.09 -2.27 5.58 -25.35 -0.14 -2.42 16 14 C 0.20 5.15 2.21 -67.23 -0.15 5.00 16 15 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 16 C -0.50 -13.81 8.34 -34.44 -0.29 -14.10 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.06 1.64 5.33 -17.82 -0.09 1.55 16 19 N -0.89 -25.75 12.36 55.43 0.69 -25.06 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.90 7.53 -51.93 -0.39 0.50 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.30 7.97 -51.93 -0.41 -0.11 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.42 7.98 -51.93 -0.41 0.01 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.15 7.50 -51.93 -0.39 0.77 16 34 H 0.06 1.00 7.63 -51.93 -0.40 0.60 16 35 H 0.02 0.42 7.24 -51.93 -0.38 0.04 16 36 H 0.07 1.54 7.78 -51.93 -0.40 1.13 16 37 H 0.06 1.08 7.99 -51.93 -0.41 0.66 16 38 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.50 7.85 -51.93 -0.41 1.10 16 42 H 0.06 1.46 7.95 -51.93 -0.41 1.05 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -28.68 330.35 -10.80 -39.48 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.16 Total: -1.82 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.94 Total: -14.00 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -1.66 Total: -45.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.68 -10.80 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.221 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds