Wall clock time and date at job start Mon Mar 30 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48670 * 111.10902 * 2 1 4 4 C 1.54377 * 104.67566 * 201.10041 * 3 2 1 5 5 C 1.54255 * 105.05948 * 23.76730 * 4 3 2 6 6 C 1.48566 * 111.00248 * 244.58541 * 2 1 3 7 7 H 1.08997 * 110.41118 * 40.13792 * 6 2 1 8 8 C 1.53006 * 110.40660 * 277.81647 * 6 2 1 9 9 C 1.52998 * 109.46614 * 179.27295 * 8 6 2 10 10 N 1.46902 * 109.47101 * 185.25095 * 9 8 6 11 11 C 1.48559 * 110.99769 * 285.42037 * 10 9 8 12 12 C 1.54381 * 104.59527 * 200.95468 * 11 10 9 13 13 C 1.54264 * 105.05788 * 23.85582 * 12 11 10 14 14 C 1.48560 * 111.00355 * 170.00000 * 10 9 8 15 15 H 1.09004 * 110.50794 * 40.21368 * 14 10 9 16 16 C 1.50695 * 110.40991 * 277.81995 * 14 10 9 17 17 H 1.07995 * 120.00441 * 3.37413 * 16 14 10 18 18 C 1.37879 * 119.99817 * 183.09591 * 16 14 10 19 19 N 1.31512 * 119.99805 * 0.27368 * 18 16 14 20 20 Si 1.86804 * 120.00083 * 180.27821 * 18 16 14 21 21 H 1.48492 * 109.47156 * 59.99628 * 20 18 16 22 22 H 1.48498 * 109.46854 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46715 * 299.99575 * 20 18 16 24 24 H 1.09001 * 109.46983 * 181.19051 * 1 2 3 25 25 H 1.08999 * 109.47085 * 301.19094 * 1 2 3 26 26 H 1.09003 * 109.47496 * 61.19391 * 1 2 3 27 27 H 1.09004 * 110.44437 * 82.25774 * 3 2 1 28 28 H 1.09001 * 110.30721 * 319.87034 * 3 2 1 29 29 H 1.09004 * 110.32335 * 264.87404 * 4 3 2 30 30 H 1.08999 * 110.41093 * 142.71429 * 4 3 2 31 31 H 1.09002 * 110.32562 * 241.10379 * 5 4 3 32 32 H 1.09005 * 110.40734 * 118.94449 * 5 4 3 33 33 H 1.08998 * 109.47004 * 59.27483 * 8 6 2 34 34 H 1.08991 * 109.47245 * 299.27450 * 8 6 2 35 35 H 1.08997 * 109.47179 * 65.25079 * 9 8 6 36 36 H 1.09001 * 109.47162 * 305.25048 * 9 8 6 37 37 H 1.09006 * 110.41126 * 82.18427 * 11 10 9 38 38 H 1.08990 * 110.51428 * 319.78663 * 11 10 9 39 39 H 1.08992 * 110.32871 * 264.96043 * 12 11 10 40 40 H 1.09000 * 110.41374 * 142.78960 * 12 11 10 41 41 H 1.09003 * 110.32318 * 241.10437 * 13 12 11 42 42 H 1.08998 * 110.32722 * 118.89217 * 13 12 11 43 43 H 0.97005 * 120.00154 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3869 0.0000 4 6 3.4450 1.2500 -0.5376 5 6 3.4431 -0.0540 -1.3616 6 6 2.0014 -0.5952 -1.2527 7 1 1.4086 -0.2729 -2.1087 8 6 2.0106 -2.1222 -1.1560 9 6 2.5451 -2.7127 -2.4624 10 7 2.4367 -4.1770 -2.4183 11 6 3.4746 -4.7611 -1.5303 12 6 3.5963 -6.2304 -1.9882 13 6 3.0992 -6.2376 -3.4485 14 6 2.7188 -4.7721 -3.7500 15 1 3.5491 -4.2552 -4.2311 16 6 1.4906 -4.7164 -4.6213 17 1 0.5937 -4.2353 -4.2603 18 6 1.5136 -5.2748 -5.8817 19 7 2.6059 -5.8607 -6.3215 20 14 -0.0064 -5.1990 -6.9649 21 1 -0.3710 -3.7801 -7.2077 22 1 0.2759 -5.8659 -8.2613 23 1 -1.1323 -5.8904 -6.2868 24 1 -0.3633 -1.0275 0.0214 25 1 -0.3633 0.5322 0.8791 26 1 -0.3634 0.4952 -0.9005 27 1 2.0131 1.7917 1.0121 28 1 1.4115 2.0213 -0.6589 29 1 4.1519 1.1746 0.2887 30 1 3.6959 2.0992 -1.1732 31 1 4.1490 -0.7695 -0.9398 32 1 3.6918 0.1536 -2.4024 33 1 0.9961 -2.4814 -0.9832 34 1 2.6507 -2.4301 -0.3294 35 1 3.5900 -2.4293 -2.5884 36 1 1.9613 -2.3302 -3.2996 37 1 3.1552 -4.7127 -0.4892 38 1 4.4244 -4.2425 -1.6602 39 1 2.9680 -6.8726 -1.3712 40 1 4.6346 -6.5588 -1.9402 41 1 2.2267 -6.8833 -3.5482 42 1 3.8939 -6.5677 -4.1174 43 1 2.6223 -6.2532 -7.2084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259991982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:10 Heat of formation + Delta-G solvation = -20.667007 kcal Electronic energy + Delta-G solvation = -19391.440797 eV Core-core repulsion = 16662.930304 eV Total energy + Delta-G solvation = -2728.510493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30460 -39.38110 -35.03755 -34.22531 -33.02884 -31.23049 -30.04178 -27.37100 -26.46556 -26.20824 -23.65970 -21.92413 -21.58775 -21.31150 -20.56145 -18.41405 -17.06522 -16.91279 -16.48317 -16.18579 -15.73646 -15.51674 -15.22182 -14.66982 -14.57469 -14.09150 -13.88443 -13.48982 -13.28964 -13.02405 -12.91287 -12.77024 -12.64216 -12.51086 -12.35397 -12.13919 -12.08170 -11.84999 -11.73017 -11.54369 -11.41783 -11.35009 -11.23877 -10.89133 -10.52066 -9.46963 -9.10017 -8.13722 -6.21841 1.40361 1.42305 1.50090 2.41741 2.95620 3.16790 3.50455 3.68748 3.82870 4.01899 4.09423 4.14175 4.26642 4.32504 4.42476 4.49706 4.51346 4.55765 4.62003 4.69171 4.73398 4.74857 4.87823 4.90257 4.95399 5.00343 5.04964 5.06675 5.19000 5.22879 5.26167 5.29269 5.33944 5.38926 5.54274 5.67646 5.72567 5.92667 6.09455 6.15691 6.47343 6.58290 6.88946 7.45619 8.95360 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.005511 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.016328 B = 5079.258250 C = 5760.529786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.031 3.969 4 C -0.119 4.119 5 C -0.122 4.122 6 C 0.066 3.934 7 H 0.040 0.960 8 C -0.076 4.076 9 C 0.062 3.938 10 N -0.519 5.519 11 C 0.036 3.964 12 C -0.122 4.122 13 C -0.089 4.089 14 C 0.202 3.798 15 H -0.028 1.028 16 C -0.515 4.515 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 11.891 12.266 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.043 4.043 7 H 0.058 0.942 8 C -0.115 4.115 9 C -0.067 4.067 10 N -0.244 5.244 11 C -0.092 4.092 12 C -0.160 4.160 13 C -0.128 4.128 14 C 0.095 3.905 15 H -0.010 1.010 16 C -0.553 4.553 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.399 11.393 12.778 17.124 hybrid contribution -0.214 0.384 -2.130 2.175 sum 0.185 11.776 10.648 15.878 Atomic orbital electron populations 1.22524 0.87527 1.02305 1.01115 1.65287 1.08769 1.16014 1.34683 1.23202 0.95381 0.89284 1.01822 1.22290 0.96556 0.97046 0.99809 1.22364 0.95436 0.97817 1.00422 1.22603 0.96123 0.94671 0.90943 0.94159 1.21232 1.01165 0.92951 0.96130 1.22018 0.98127 0.88658 0.97913 1.65341 1.44984 1.05069 1.08967 1.23093 0.93183 0.94824 0.98086 1.22369 1.00927 0.96492 0.96190 1.21989 0.98420 0.98045 0.94394 1.19989 0.93613 0.91170 0.85751 1.01039 1.21220 0.98393 1.36365 0.99343 0.93118 1.25700 0.98942 0.95014 0.98983 1.70082 1.28680 1.38443 1.18869 0.85625 0.79900 0.78340 0.77854 1.19811 1.20745 1.19706 0.91840 0.89793 0.95559 0.88870 0.93668 0.90282 0.90141 0.91332 0.91600 0.92687 0.91453 0.95659 0.93399 0.89459 0.94732 0.91060 0.90891 0.94754 0.94432 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.42 127.69 1.20 1.51 16 2 N -0.52 -12.58 5.34 -882.38 -4.71 -17.30 16 3 C 0.03 0.58 6.50 86.43 0.56 1.15 16 4 C -0.12 -2.19 7.00 31.49 0.22 -1.97 16 5 C -0.12 -2.91 5.72 31.49 0.18 -2.73 16 6 C 0.07 1.78 2.33 45.06 0.11 1.89 16 7 H 0.04 1.19 7.88 -2.39 -0.02 1.17 16 8 C -0.08 -2.42 4.89 30.60 0.15 -2.27 16 9 C 0.06 2.42 4.53 86.30 0.39 2.81 16 10 N -0.52 -22.89 5.01 -861.04 -4.31 -27.20 16 11 C 0.04 1.33 5.94 86.45 0.51 1.84 16 12 C -0.12 -4.62 7.00 31.49 0.22 -4.40 16 13 C -0.09 -4.40 5.58 31.49 0.18 -4.22 16 14 C 0.20 10.61 2.21 44.31 0.10 10.71 16 15 H -0.03 -1.63 8.00 -2.38 -0.02 -1.65 16 16 C -0.51 -29.45 8.34 25.60 0.21 -29.24 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.01 0.71 5.33 84.66 0.45 1.16 16 19 N -0.92 -54.31 12.36 21.45 0.27 -54.05 16 20 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 H 0.06 1.49 7.53 -2.39 -0.02 1.47 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.03 0.57 7.97 -2.39 -0.02 0.55 16 27 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 0.82 7.98 -2.39 -0.02 0.81 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.68 7.81 -2.39 -0.02 1.67 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.87 7.50 -2.39 -0.02 1.85 16 34 H 0.07 2.06 7.63 -2.39 -0.02 2.04 16 35 H 0.03 0.96 7.24 -2.39 -0.02 0.94 16 36 H 0.05 2.08 7.78 -2.39 -0.02 2.06 16 37 H 0.09 2.80 7.99 -2.38 -0.02 2.78 16 38 H 0.03 1.22 7.75 -2.39 -0.02 1.21 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.03 1.80 7.85 -2.39 -0.02 1.78 16 42 H 0.04 1.94 7.95 -2.39 -0.02 1.93 16 43 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -62.45 330.35 -1.32 -63.76 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.93 Total: 11.77 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 4.48 Total: -23.77 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -8.76 Total: -98.54 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.45 -1.32 -63.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.098 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds