Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47901 * 110.99880 * 2 1 4 4 C 1.53995 * 107.05737 * 145.84249 * 3 2 1 5 5 C 1.54596 * 105.13840 * 358.77583 * 4 3 2 6 6 H 1.09003 * 110.71780 * 96.57855 * 5 4 3 7 7 C 1.53004 * 110.72279 * 219.68255 * 5 4 3 8 8 N 1.46897 * 109.46980 * 181.43917 * 7 5 4 9 9 C 1.46848 * 111.00251 * 176.45042 * 8 7 5 10 10 C 1.53029 * 109.52614 * 174.16195 * 9 8 7 11 11 C 1.53120 * 109.27976 * 59.17869 * 10 9 8 12 12 C 1.53118 * 109.16181 * 302.34802 * 11 10 9 13 13 H 1.09004 * 109.49986 * 297.71170 * 12 11 10 14 14 C 1.50697 * 109.50595 * 177.59533 * 12 11 10 15 15 H 1.08000 * 120.00186 * 240.00131 * 14 12 11 16 16 C 1.37880 * 120.00144 * 59.99324 * 14 12 11 17 17 N 1.31512 * 119.99905 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00227 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46985 * 90.00490 * 18 16 14 20 20 H 1.48497 * 109.47430 * 210.00447 * 18 16 14 21 21 H 1.48494 * 109.47319 * 330.00835 * 18 16 14 22 22 C 1.46853 * 110.99980 * 52.23983 * 8 7 5 23 23 C 1.48724 * 111.04299 * 117.57886 * 2 1 3 24 24 H 1.09000 * 109.47394 * 60.12528 * 1 2 3 25 25 H 1.08994 * 109.47364 * 180.12047 * 1 2 3 26 26 H 1.08994 * 109.47443 * 300.12538 * 1 2 3 27 27 H 1.09005 * 109.91618 * 26.49254 * 3 2 1 28 28 H 1.08996 * 109.92088 * 265.19781 * 3 2 1 29 29 H 1.08997 * 110.30842 * 239.86070 * 4 3 2 30 30 H 1.08994 * 110.30762 * 117.69238 * 4 3 2 31 31 H 1.08995 * 109.47020 * 61.44221 * 7 5 4 32 32 H 1.08997 * 109.46890 * 301.43849 * 7 5 4 33 33 H 1.09000 * 109.45537 * 54.14279 * 9 8 7 34 34 H 1.08995 * 109.45973 * 294.17924 * 9 8 7 35 35 H 1.09001 * 109.50220 * 299.23707 * 10 9 8 36 36 H 1.09000 * 109.50729 * 179.12396 * 10 9 8 37 37 H 1.09001 * 109.52143 * 182.44390 * 11 10 9 38 38 H 1.08994 * 109.52144 * 62.25171 * 11 10 9 39 39 H 0.96997 * 120.00523 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46165 * 65.82311 * 22 8 7 41 41 H 1.09000 * 109.46487 * 305.85622 * 22 8 7 42 42 H 1.08992 * 110.84312 * 81.96004 * 23 2 1 43 43 H 1.09007 * 110.58489 * 318.76758 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3154 6 1 4.1140 -0.6531 0.6579 7 6 3.9588 -0.1307 2.7576 8 7 4.1247 -1.5273 3.1818 9 6 4.6930 -1.6027 4.5337 10 6 4.7161 -3.0606 4.9983 11 6 5.5581 -3.8885 4.0236 12 6 4.9735 -3.7541 2.6148 13 1 3.9601 -4.1554 2.6016 14 6 5.8309 -4.5183 1.6392 15 1 6.3042 -4.0024 0.8169 16 6 6.0111 -5.8762 1.7964 17 7 5.4344 -6.5046 2.7974 18 14 7.0733 -6.8237 0.5866 19 1 8.4794 -6.8331 1.0643 20 1 6.5774 -8.2193 0.4799 21 1 7.0077 -6.1718 -0.7460 22 6 4.9429 -2.2760 2.2193 23 6 2.0030 -0.6426 1.2303 24 1 -0.3634 0.5119 -0.8911 25 1 -0.3634 -1.0276 0.0022 26 1 -0.3634 0.5157 0.8888 27 1 1.2757 2.0561 0.4572 28 1 2.2122 1.6968 -1.0211 29 1 3.2135 2.0429 1.6767 30 1 4.1469 1.6455 0.2024 31 1 3.2397 0.3642 3.4101 32 1 4.9179 0.3836 2.8175 33 1 4.0824 -1.0132 5.2177 34 1 5.7092 -1.2088 4.5229 35 1 3.6986 -3.4510 5.0225 36 1 5.1523 -3.1180 5.9955 37 1 5.5416 -4.9355 4.3264 38 1 6.5850 -3.5231 4.0282 39 1 5.5609 -7.4599 2.9079 40 1 5.9580 -1.8790 2.2194 41 1 4.5139 -2.1756 1.2223 42 1 2.0093 -1.7279 1.1296 43 1 1.4244 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -2.108210 kcal Electronic energy + Delta-G solvation = -19630.780143 eV Core-core repulsion = 16903.074421 eV Total energy + Delta-G solvation = -2727.705723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28199 -37.74295 -34.11203 -32.61640 -31.05044 -29.85296 -28.72478 -26.33742 -24.94158 -24.31037 -22.02900 -21.31512 -20.82306 -19.58872 -18.49645 -16.51871 -15.98810 -15.30139 -14.90574 -14.63836 -14.32325 -13.95119 -13.78889 -13.28935 -13.03353 -12.82147 -12.52257 -12.32571 -11.97565 -11.79180 -11.72338 -11.36518 -11.20157 -10.91618 -10.78108 -10.72756 -10.61367 -10.55825 -10.26716 -10.02822 -9.77568 -9.38846 -8.95225 -8.63404 -8.35385 -8.25808 -7.59927 -5.93029 -3.98817 3.33899 3.40705 3.44228 4.10116 4.39064 4.53410 4.75410 4.86544 5.07761 5.25944 5.36745 5.38705 5.43173 5.55906 5.65078 5.71909 5.80353 5.81964 5.85017 5.86164 5.87832 6.04350 6.06633 6.11436 6.30470 6.36684 6.46570 6.50580 6.59791 6.75423 6.81131 6.96272 7.04248 7.11079 7.26483 7.45058 7.71998 7.80116 7.87805 8.13719 8.22449 8.53512 9.05339 9.65332 11.12962 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.005807 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.736517 B = 4820.937602 C = 5516.759974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.093 4.093 6 H 0.092 0.908 7 C 0.066 3.934 8 N -0.537 5.537 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.063 3.937 23 C 0.054 3.946 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.259 0.741 40 H 0.016 0.984 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 14.084 -0.512 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.252 5.252 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.112 4.112 6 H 0.110 0.890 7 C -0.062 4.062 8 N -0.262 5.262 9 C -0.064 4.064 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.551 4.551 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.064 4.064 23 C -0.073 4.073 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.428 13.406 -0.895 14.894 hybrid contribution 1.113 0.321 0.116 1.164 sum -5.315 13.727 -0.780 14.741 Atomic orbital electron populations 1.22474 0.88256 1.02210 1.00115 1.64746 1.07758 1.14420 1.38262 1.22833 0.95776 0.90207 1.00255 1.22443 0.97547 0.97249 0.99307 1.22213 0.97333 0.95108 0.96583 0.89002 1.22058 0.98715 0.90710 0.94759 1.62050 1.51341 1.10069 1.02693 1.21997 0.96224 0.98167 0.90014 1.21667 1.01343 0.94201 0.98246 1.21659 0.95893 1.01092 0.96266 1.18655 0.97142 0.88181 0.92374 0.94835 1.21156 1.29965 0.92880 1.11136 0.92897 1.24924 0.95802 0.97650 0.95435 1.69889 1.43837 1.09180 1.29904 0.86650 0.80608 0.79292 0.81771 1.20846 1.21272 1.19942 1.22411 0.92778 0.96757 0.94454 1.23203 0.93797 1.00650 0.89640 0.91784 0.91163 0.95746 0.94212 0.90731 0.91671 0.91141 0.91789 0.95598 0.92660 0.96025 0.92131 0.93653 0.89155 0.95273 0.93124 0.96593 0.91494 0.89031 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 60.06 0.56 0.77 16 2 N -0.53 -7.15 5.55 -238.55 -1.32 -8.47 16 3 C 0.04 0.43 6.70 -2.75 -0.02 0.41 16 4 C -0.13 -1.48 6.51 -25.37 -0.17 -1.64 16 5 C -0.09 -1.34 2.60 -88.76 -0.23 -1.57 16 6 H 0.09 1.50 6.00 -51.93 -0.31 1.19 16 7 C 0.07 0.99 4.43 -3.82 -0.02 0.98 16 8 N -0.54 -9.82 4.60 -234.68 -1.08 -10.90 16 9 C 0.06 1.13 5.46 -3.84 -0.02 1.11 16 10 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.53 11.35 55.43 0.63 -24.90 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 1.33 4.29 -3.83 -0.02 1.31 16 23 C 0.05 0.80 5.88 -1.79 -0.01 0.79 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.26 8.01 -51.93 -0.42 -0.16 16 27 H 0.04 0.42 7.73 -51.93 -0.40 0.01 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.68 7.85 -51.93 -0.41 0.28 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 1.41 5.75 -51.93 -0.30 1.12 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -28.20 324.15 -10.73 -38.93 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.02 Total: -1.29 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.81 Total: -14.68 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -1.77 Total: -44.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.20 -10.73 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.825 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds