Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47901 * 110.99880 * 2 1 4 4 C 1.53995 * 107.05737 * 145.84249 * 3 2 1 5 5 C 1.54596 * 105.13840 * 358.77583 * 4 3 2 6 6 H 1.09003 * 110.71780 * 96.57855 * 5 4 3 7 7 C 1.53004 * 110.72279 * 219.68255 * 5 4 3 8 8 N 1.46897 * 109.46980 * 181.43917 * 7 5 4 9 9 C 1.46848 * 111.00251 * 176.45042 * 8 7 5 10 10 C 1.53029 * 109.52614 * 174.16195 * 9 8 7 11 11 C 1.53120 * 109.27976 * 59.17869 * 10 9 8 12 12 C 1.53118 * 109.16181 * 302.34802 * 11 10 9 13 13 H 1.09004 * 109.49986 * 297.71170 * 12 11 10 14 14 C 1.50697 * 109.50595 * 177.59533 * 12 11 10 15 15 H 1.08000 * 120.00186 * 240.00131 * 14 12 11 16 16 C 1.37880 * 120.00144 * 59.99324 * 14 12 11 17 17 N 1.31512 * 119.99905 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00227 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46985 * 90.00490 * 18 16 14 20 20 H 1.48497 * 109.47430 * 210.00447 * 18 16 14 21 21 H 1.48494 * 109.47319 * 330.00835 * 18 16 14 22 22 C 1.46853 * 110.99980 * 52.23983 * 8 7 5 23 23 C 1.48724 * 111.04299 * 117.57886 * 2 1 3 24 24 H 1.09000 * 109.47394 * 60.12528 * 1 2 3 25 25 H 1.08994 * 109.47364 * 180.12047 * 1 2 3 26 26 H 1.08994 * 109.47443 * 300.12538 * 1 2 3 27 27 H 1.09005 * 109.91618 * 26.49254 * 3 2 1 28 28 H 1.08996 * 109.92088 * 265.19781 * 3 2 1 29 29 H 1.08997 * 110.30842 * 239.86070 * 4 3 2 30 30 H 1.08994 * 110.30762 * 117.69238 * 4 3 2 31 31 H 1.08995 * 109.47020 * 61.44221 * 7 5 4 32 32 H 1.08997 * 109.46890 * 301.43849 * 7 5 4 33 33 H 1.09000 * 109.45537 * 54.14279 * 9 8 7 34 34 H 1.08995 * 109.45973 * 294.17924 * 9 8 7 35 35 H 1.09001 * 109.50220 * 299.23707 * 10 9 8 36 36 H 1.09000 * 109.50729 * 179.12396 * 10 9 8 37 37 H 1.09001 * 109.52143 * 182.44390 * 11 10 9 38 38 H 1.08994 * 109.52144 * 62.25171 * 11 10 9 39 39 H 0.96997 * 120.00523 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46165 * 65.82311 * 22 8 7 41 41 H 1.09000 * 109.46487 * 305.85622 * 22 8 7 42 42 H 1.08992 * 110.84312 * 81.96004 * 23 2 1 43 43 H 1.09007 * 110.58489 * 318.76758 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3154 6 1 4.1140 -0.6531 0.6579 7 6 3.9588 -0.1307 2.7576 8 7 4.1247 -1.5273 3.1818 9 6 4.6930 -1.6027 4.5337 10 6 4.7161 -3.0606 4.9983 11 6 5.5581 -3.8885 4.0236 12 6 4.9735 -3.7541 2.6148 13 1 3.9601 -4.1554 2.6016 14 6 5.8309 -4.5183 1.6392 15 1 6.3042 -4.0024 0.8169 16 6 6.0111 -5.8762 1.7964 17 7 5.4344 -6.5046 2.7974 18 14 7.0733 -6.8237 0.5866 19 1 8.4794 -6.8331 1.0643 20 1 6.5774 -8.2193 0.4799 21 1 7.0077 -6.1718 -0.7460 22 6 4.9429 -2.2760 2.2193 23 6 2.0030 -0.6426 1.2303 24 1 -0.3634 0.5119 -0.8911 25 1 -0.3634 -1.0276 0.0022 26 1 -0.3634 0.5157 0.8888 27 1 1.2757 2.0561 0.4572 28 1 2.2122 1.6968 -1.0211 29 1 3.2135 2.0429 1.6767 30 1 4.1469 1.6455 0.2024 31 1 3.2397 0.3642 3.4101 32 1 4.9179 0.3836 2.8175 33 1 4.0824 -1.0132 5.2177 34 1 5.7092 -1.2088 4.5229 35 1 3.6986 -3.4510 5.0225 36 1 5.1523 -3.1180 5.9955 37 1 5.5416 -4.9355 4.3264 38 1 6.5850 -3.5231 4.0282 39 1 5.5609 -7.4599 2.9079 40 1 5.9580 -1.8790 2.2194 41 1 4.5139 -2.1756 1.2223 42 1 2.0093 -1.7279 1.1296 43 1 1.4244 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -20.283459 kcal Electronic energy + Delta-G solvation = -19631.568281 eV Core-core repulsion = 16903.074421 eV Total energy + Delta-G solvation = -2728.493861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51162 -39.15273 -35.78420 -34.23491 -32.41660 -31.68299 -29.85214 -27.48772 -26.93262 -25.57109 -23.50068 -22.98994 -21.87575 -20.80996 -20.21406 -18.44766 -17.35195 -16.59687 -16.39336 -16.14001 -15.69303 -15.35337 -14.88870 -14.80676 -14.49088 -14.26015 -14.08050 -13.91752 -13.47267 -13.06162 -12.93513 -12.84239 -12.59834 -12.49266 -12.35952 -12.16966 -11.93189 -11.82038 -11.75582 -11.64553 -11.48474 -11.22199 -10.81415 -10.56741 -10.35660 -9.33936 -9.07218 -8.06940 -6.20790 1.40722 1.41564 1.51895 2.43419 3.06050 3.15874 3.19905 3.74958 3.83499 3.96048 4.21089 4.27869 4.29944 4.43762 4.46484 4.53290 4.55401 4.57904 4.64730 4.71628 4.81103 4.82520 4.86654 4.92632 4.96354 5.00312 5.01808 5.11205 5.13449 5.21498 5.28720 5.39583 5.43166 5.54777 5.64658 5.95947 5.99236 6.15056 6.15821 6.23558 6.41575 6.48832 6.92088 7.46915 8.97674 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.005807 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.736517 B = 4820.937602 C = 5516.759974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.550 5.550 3 C 0.038 3.962 4 C -0.119 4.119 5 C -0.094 4.094 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.547 5.547 9 C 0.066 3.934 10 C -0.110 4.110 11 C -0.105 4.105 12 C 0.053 3.947 13 H -0.005 1.005 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.082 3.918 23 C 0.060 3.940 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.089 0.911 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.260 0.740 40 H 0.008 0.992 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 16.330 -0.412 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.274 5.274 3 C -0.090 4.090 4 C -0.157 4.157 5 C -0.113 4.113 6 H 0.083 0.917 7 C -0.058 4.058 8 N -0.271 5.271 9 C -0.061 4.061 10 C -0.148 4.148 11 C -0.143 4.143 12 C 0.034 3.966 13 H 0.013 0.987 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.045 4.045 23 C -0.067 4.067 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.528 15.672 -0.796 16.996 hybrid contribution 1.096 -0.389 0.074 1.165 sum -5.432 15.284 -0.722 16.236 Atomic orbital electron populations 1.22507 0.87012 1.02170 1.01328 1.64694 1.09174 1.15920 1.37620 1.22894 0.95960 0.89218 1.00920 1.22419 0.97952 0.95257 1.00081 1.22137 0.96363 0.96917 0.95893 0.91723 1.22133 0.99737 0.88513 0.95384 1.61980 1.50471 1.12210 1.02458 1.22015 0.97226 0.96811 0.90063 1.21577 0.99850 0.95060 0.98309 1.21467 0.96183 0.99953 0.96683 1.18577 0.94461 0.90514 0.93015 0.98707 1.21522 1.30454 0.93708 1.11678 0.93318 1.25699 0.97016 0.98589 0.97095 1.70032 1.44850 1.09362 1.31264 0.85653 0.79053 0.77874 0.79669 1.20067 1.20825 1.19422 1.22001 0.92812 0.94655 0.95048 1.23011 0.94431 0.98758 0.90536 0.90216 0.91945 0.94764 0.92533 0.90031 0.89723 0.90450 0.89506 0.94731 0.89225 0.95660 0.93160 0.91258 0.92490 0.96076 0.93099 0.97329 0.92087 0.92527 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.40 127.69 1.20 1.58 16 2 N -0.55 -14.23 5.55 -908.64 -5.04 -19.27 16 3 C 0.04 0.77 6.70 86.45 0.58 1.35 16 4 C -0.12 -2.43 6.51 31.47 0.20 -2.22 16 5 C -0.09 -2.58 2.60 -9.59 -0.02 -2.61 16 6 H 0.06 2.13 6.00 -2.39 -0.01 2.12 16 7 C 0.07 1.94 4.43 86.31 0.38 2.32 16 8 N -0.55 -19.49 4.60 -896.38 -4.13 -23.61 16 9 C 0.07 2.21 5.46 86.32 0.47 2.68 16 10 C -0.11 -4.27 6.09 30.64 0.19 -4.08 16 11 C -0.10 -5.13 5.02 30.67 0.15 -4.97 16 12 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16 13 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 14 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 15 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 16 C 0.01 0.83 5.30 84.66 0.45 1.28 16 17 N -0.92 -54.25 11.35 21.45 0.24 -54.00 16 18 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.08 3.56 4.29 86.32 0.37 3.93 16 23 C 0.06 1.74 5.88 86.61 0.51 2.25 16 24 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.03 0.65 8.01 -2.39 -0.02 0.63 16 27 H 0.06 0.98 7.73 -2.38 -0.02 0.96 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.43 7.85 -2.39 -0.02 1.41 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 2.68 5.75 -2.39 -0.01 2.67 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.34 7.83 -2.38 -0.02 1.32 16 Total: -1.00 -62.59 324.15 -1.28 -63.87 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.94 Total: 12.31 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.68 Total: -26.03 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -8.92 Total: -96.89 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.59 -1.28 -63.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.587 kcal (2) G-P(sol) polarization free energy of solvation -62.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds