Wall clock time and date at job start Mon Mar 30 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47843 * 111.00195 * 2 1 4 4 C 1.54905 * 104.79569 * 146.36509 * 3 2 1 5 5 C 1.55142 * 101.64962 * 322.92918 * 4 3 2 6 6 H 1.09000 * 110.85444 * 277.19682 * 5 4 3 7 7 C 1.53001 * 110.70159 * 154.03622 * 5 4 3 8 8 N 1.46902 * 109.47131 * 182.68122 * 7 5 4 9 9 C 1.46842 * 111.00235 * 308.61580 * 8 7 5 10 10 C 1.53039 * 109.52265 * 174.15688 * 9 8 7 11 11 C 1.53114 * 109.27809 * 59.17800 * 10 9 8 12 12 C 1.53115 * 109.16308 * 302.34314 * 11 10 9 13 13 H 1.09003 * 109.50669 * 297.71556 * 12 11 10 14 14 C 1.50696 * 109.50554 * 177.63487 * 12 11 10 15 15 H 1.08002 * 120.00410 * 245.40234 * 14 12 11 16 16 C 1.37881 * 120.00078 * 65.40271 * 14 12 11 17 17 N 1.31506 * 119.99768 * 9.04520 * 16 14 12 18 18 Si 1.86800 * 120.00032 * 189.04031 * 16 14 12 19 19 H 1.48506 * 109.46698 * 94.99177 * 18 16 14 20 20 H 1.48497 * 109.47165 * 214.98695 * 18 16 14 21 21 H 1.48492 * 109.47307 * 334.99179 * 18 16 14 22 22 C 1.46842 * 111.00129 * 184.40086 * 8 7 5 23 23 C 1.47442 * 110.99825 * 120.84621 * 2 1 3 24 24 H 1.08994 * 109.46682 * 299.16078 * 1 2 3 25 25 H 1.09008 * 109.46907 * 59.15268 * 1 2 3 26 26 H 1.08993 * 109.47118 * 179.15717 * 1 2 3 27 27 H 1.09004 * 110.37171 * 265.19683 * 3 2 1 28 28 H 1.08998 * 110.37403 * 27.53034 * 3 2 1 29 29 H 1.09001 * 110.99015 * 204.84241 * 4 3 2 30 30 H 1.08998 * 110.98947 * 81.02164 * 4 3 2 31 31 H 1.09006 * 109.47082 * 62.68901 * 7 5 4 32 32 H 1.09000 * 109.47551 * 302.68737 * 7 5 4 33 33 H 1.08999 * 109.46006 * 294.17362 * 9 8 7 34 34 H 1.09004 * 109.46301 * 54.14354 * 9 8 7 35 35 H 1.09002 * 109.50292 * 299.23804 * 10 9 8 36 36 H 1.09002 * 109.50327 * 179.12200 * 10 9 8 37 37 H 1.09004 * 109.52235 * 182.44312 * 11 10 9 38 38 H 1.09002 * 109.52598 * 62.25086 * 11 10 9 39 39 H 0.96997 * 120.00264 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.46408 * 65.82673 * 22 8 7 41 41 H 1.09005 * 109.46562 * 305.85563 * 22 8 7 42 42 H 1.09000 * 109.88852 * 117.33354 * 23 2 1 43 43 H 1.08999 * 109.89026 * 356.14531 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9158 0.2821 1.9314 6 1 2.3753 0.7724 2.7411 7 6 4.1570 -0.4340 2.4679 8 7 3.7522 -1.4374 3.4616 9 6 2.8753 -0.8456 4.4800 10 6 2.3580 -1.9448 5.4107 11 6 3.5462 -2.6436 6.0771 12 6 4.4688 -3.2091 4.9939 13 1 3.9299 -3.9553 4.4099 14 6 5.6709 -3.8482 5.6401 15 1 6.6541 -3.4290 5.4851 16 6 5.5156 -4.9680 6.4293 17 7 4.3542 -5.5831 6.4766 18 14 6.9548 -5.6116 7.4312 19 1 6.8821 -5.0644 8.8099 20 1 6.8978 -7.0945 7.4836 21 1 8.2286 -5.1872 6.7968 22 6 4.9250 -2.0732 4.0752 23 6 1.9974 -0.7058 1.1818 24 1 -0.3632 0.5007 0.8974 25 1 -0.3633 0.5270 -0.8824 26 1 -0.3633 -1.0275 -0.0151 27 1 2.2148 1.7038 -1.0183 28 1 1.2890 2.0592 0.4723 29 1 3.5496 2.2719 1.2640 30 1 4.1302 0.9281 0.2242 31 1 4.8219 0.2924 2.9352 32 1 4.6766 -0.9259 1.6456 33 1 3.4357 -0.1124 5.0601 34 1 2.0322 -0.3555 3.9929 35 1 1.7858 -2.6710 4.8333 36 1 1.7196 -1.5031 6.1759 37 1 3.1844 -3.4557 6.7077 38 1 4.0963 -1.9259 6.6858 39 1 4.2447 -6.3707 7.0321 40 1 5.4758 -1.3344 4.6573 41 1 5.5706 -2.4749 3.2942 42 1 2.5697 -1.5786 0.8673 43 1 1.1756 -1.0120 1.8290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:12 Heat of formation + Delta-G solvation = -4.163788 kcal Electronic energy + Delta-G solvation = -19496.283634 eV Core-core repulsion = 16768.488775 eV Total energy + Delta-G solvation = -2727.794859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43398 -37.79550 -34.17480 -32.46687 -31.20610 -29.96132 -28.82119 -26.35837 -24.96024 -24.37749 -21.88962 -21.66912 -20.96099 -19.56305 -18.57878 -16.48354 -16.15593 -15.46690 -15.08142 -14.45113 -14.40576 -13.92739 -13.64147 -13.35395 -13.23489 -12.81052 -12.67492 -12.43397 -12.11295 -11.80704 -11.61533 -11.34415 -11.28435 -11.03960 -10.95794 -10.82158 -10.69042 -10.58283 -10.44242 -10.04938 -9.88128 -9.43135 -8.95719 -8.71675 -8.34000 -8.27769 -7.61999 -5.98277 -3.99921 3.32117 3.39544 3.42354 4.02081 4.32898 4.50010 4.65595 4.84653 4.90030 5.23978 5.30085 5.34016 5.36482 5.46210 5.53445 5.64351 5.71084 5.72450 5.77563 5.80726 5.87378 5.97526 6.05257 6.09702 6.24009 6.27397 6.40662 6.47488 6.52745 6.69061 6.72610 6.94126 6.96797 7.04610 7.20360 7.34382 7.68391 7.77107 7.83528 8.03802 8.14538 8.50424 9.04643 9.63080 11.10875 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041495 B = 0.004511 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.615805 B = 6205.547827 C = 6404.008106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.042 3.958 4 C -0.125 4.125 5 C -0.109 4.109 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.536 5.536 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.105 4.105 12 C 0.054 3.946 13 H 0.041 0.959 14 C -0.517 4.517 15 H 0.053 0.947 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.068 3.932 23 C 0.058 3.942 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.259 0.741 40 H 0.017 0.983 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 13.020 -9.394 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.129 4.129 6 H 0.093 0.907 7 C -0.062 4.062 8 N -0.260 5.260 9 C -0.068 4.068 10 C -0.155 4.155 11 C -0.143 4.143 12 C 0.035 3.965 13 H 0.059 0.941 14 C -0.556 4.556 15 H 0.071 0.929 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.714 3.286 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.058 4.058 23 C -0.069 4.069 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.042 12.226 -10.011 16.917 hybrid contribution 0.896 0.691 1.857 2.175 sum -5.146 12.918 -8.154 16.119 Atomic orbital electron populations 1.22518 0.88086 1.02077 1.00093 1.63628 1.07658 1.13998 1.41065 1.23024 0.95612 0.89783 1.00157 1.22746 0.97737 0.99038 0.96838 1.22503 0.97155 0.95993 0.97213 0.90690 1.22052 0.94854 0.93264 0.96005 1.62053 1.19450 1.29290 1.15232 1.22082 0.95869 0.96051 0.92792 1.21659 0.99179 0.97386 0.97267 1.21590 0.94735 0.98504 0.99490 1.18667 0.94741 0.91526 0.91578 0.94054 1.21128 0.93346 1.11304 1.29789 0.92874 1.24921 0.95603 0.96138 0.96948 1.69971 1.23641 1.19519 1.39295 0.86680 0.83146 0.77994 0.80788 1.20821 1.21299 1.19931 1.22297 0.89731 0.96840 0.96966 1.22793 0.97770 0.97179 0.89184 0.95725 0.91823 0.91303 0.90533 0.93950 0.91135 0.90424 0.95616 0.90778 0.96165 0.92196 0.91981 0.93694 0.90920 0.95008 0.93094 0.96502 0.92172 0.89483 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.07 0.55 0.76 16 2 N -0.54 -6.57 5.44 -239.52 -1.30 -7.87 16 3 C 0.04 0.44 6.73 -2.30 -0.02 0.42 16 4 C -0.13 -1.32 6.52 -24.59 -0.16 -1.48 16 5 C -0.11 -1.38 2.36 -88.80 -0.21 -1.59 16 6 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 7 C 0.07 1.00 4.45 -3.82 -0.02 0.98 16 8 N -0.54 -9.73 4.51 -234.67 -1.06 -10.79 16 9 C 0.06 1.04 5.04 -3.84 -0.02 1.02 16 10 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 11 C -0.10 -2.46 5.09 -26.61 -0.14 -2.60 16 12 C 0.05 1.35 2.13 -91.69 -0.19 1.15 16 13 H 0.04 1.16 8.09 -51.93 -0.42 0.74 16 14 C -0.52 -14.25 8.49 -34.44 -0.29 -14.54 16 15 H 0.05 1.45 7.77 -52.49 -0.41 1.04 16 16 C 0.07 1.83 5.23 -17.82 -0.09 1.74 16 17 N -0.89 -25.60 12.15 55.43 0.67 -24.93 16 18 Si 0.89 21.35 29.55 -169.99 -5.02 16.33 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.07 1.46 4.69 -3.83 -0.02 1.44 16 23 C 0.06 0.78 6.22 -2.84 -0.02 0.76 16 24 H 0.02 0.25 8.10 -51.93 -0.42 -0.17 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.41 7.78 -51.93 -0.40 0.01 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 31 H 0.03 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.92 5.81 -51.93 -0.30 0.62 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.90 6.95 -51.93 -0.36 1.54 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 42 H 0.09 1.32 7.80 -51.93 -0.41 0.91 16 43 H 0.06 0.78 7.58 -51.93 -0.39 0.38 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -28.27 325.26 -10.66 -38.93 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.06 Total: -2.19 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -0.79 Total: -14.37 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.69 Total: -43.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.27 -10.66 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.762 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds