Wall clock time and date at job start Mon Mar 30 2020 04:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47907 * 110.99845 * 2 1 4 4 C 1.53990 * 107.05675 * 145.84878 * 3 2 1 5 5 C 1.54597 * 105.14143 * 358.77466 * 4 3 2 6 6 H 1.09000 * 110.72471 * 96.39833 * 5 4 3 7 7 C 1.52999 * 110.72690 * 219.68730 * 5 4 3 8 8 N 1.46894 * 109.47472 * 184.99871 * 7 5 4 9 9 C 1.46848 * 111.00160 * 66.04473 * 8 7 5 10 10 C 1.53030 * 109.52546 * 185.83827 * 9 8 7 11 11 C 1.53117 * 109.28109 * 300.82419 * 10 9 8 12 12 C 1.53117 * 109.16116 * 57.65234 * 11 10 9 13 13 H 1.09001 * 109.50253 * 62.32992 * 12 11 10 14 14 C 1.50706 * 109.50118 * 182.40699 * 12 11 10 15 15 H 1.07994 * 119.99961 * 119.99939 * 14 12 11 16 16 C 1.37875 * 119.99883 * 299.99890 * 14 12 11 17 17 N 1.31518 * 119.99781 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 120.00104 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.46945 * 90.00185 * 18 16 14 20 20 H 1.48502 * 109.47030 * 209.99930 * 18 16 14 21 21 H 1.48497 * 109.47000 * 330.00022 * 18 16 14 22 22 C 1.46848 * 111.00265 * 190.25413 * 8 7 5 23 23 C 1.48529 * 111.00554 * 117.39837 * 2 1 3 24 24 H 1.08995 * 109.47398 * 60.12313 * 1 2 3 25 25 H 1.09000 * 109.47063 * 180.12844 * 1 2 3 26 26 H 1.09000 * 109.46598 * 300.12057 * 1 2 3 27 27 H 1.08996 * 109.91720 * 26.48982 * 3 2 1 28 28 H 1.09002 * 109.91750 * 265.19957 * 3 2 1 29 29 H 1.09005 * 110.30685 * 239.86077 * 4 3 2 30 30 H 1.09003 * 110.39778 * 117.73322 * 4 3 2 31 31 H 1.09000 * 109.46790 * 305.00081 * 7 5 4 32 32 H 1.09002 * 109.47288 * 64.99341 * 7 5 4 33 33 H 1.09003 * 109.46363 * 305.85859 * 9 8 7 34 34 H 1.08999 * 109.46036 * 65.82286 * 9 8 7 35 35 H 1.09006 * 109.50215 * 60.76272 * 10 9 8 36 36 H 1.09003 * 109.50478 * 180.87443 * 10 9 8 37 37 H 1.09003 * 109.52168 * 177.56180 * 11 10 9 38 38 H 1.08998 * 109.51685 * 297.74569 * 11 10 9 39 39 H 0.97006 * 119.99658 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.46331 * 294.17725 * 22 8 7 41 41 H 1.09002 * 109.45936 * 54.14470 * 22 8 7 42 42 H 1.09002 * 110.67056 * 81.84058 * 23 2 1 43 43 H 1.08999 * 110.66437 * 318.71748 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8264 5 6 3.4492 -0.0929 1.3152 6 1 4.1115 -0.6540 0.6560 7 6 3.9590 -0.1308 2.7573 8 7 4.2060 -1.5237 3.1530 9 6 5.3097 -2.1034 2.3770 10 6 5.4431 -3.5910 2.7102 11 6 5.7092 -3.7514 4.2095 12 6 4.5694 -3.0970 4.9950 13 1 3.6324 -3.6058 4.7686 14 6 4.8529 -3.1985 6.4717 15 1 4.9436 -2.3021 7.0670 16 6 4.9965 -4.4359 7.0626 17 7 5.2435 -4.5245 8.3513 18 14 4.8403 -5.9866 6.0327 19 1 6.1741 -6.3626 5.4988 20 1 4.3158 -7.0904 6.8764 21 1 3.9071 -5.7395 4.9044 22 6 4.4614 -1.6237 4.5956 23 6 2.0014 -0.6381 1.2311 24 1 -0.3634 0.5119 -0.8910 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3632 0.5157 0.8889 27 1 1.2758 2.0562 0.4571 28 1 2.2121 1.6968 -1.0212 29 1 3.2136 2.0429 1.6766 30 1 4.1479 1.6461 0.2037 31 1 4.8863 0.4375 2.8299 32 1 3.2116 0.3077 3.4186 33 1 5.1060 -1.9865 1.3126 34 1 6.2383 -1.5905 2.6274 35 1 4.5197 -4.1071 2.4472 36 1 6.2724 -4.0175 2.1457 37 1 5.7619 -4.8113 4.4588 38 1 6.6523 -3.2688 4.4657 39 1 5.3441 -5.3952 8.7671 40 1 5.3939 -1.1130 4.8356 41 1 3.6415 -1.1583 5.1427 42 1 2.0042 -1.7235 1.1315 43 1 1.4238 -0.3323 2.1034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:14 Heat of formation + Delta-G solvation = -18.157481 kcal Electronic energy + Delta-G solvation = -19516.260537 eV Core-core repulsion = 16787.858865 eV Total energy + Delta-G solvation = -2728.401672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50873 -39.31548 -35.87808 -34.28020 -32.71702 -32.00045 -30.01796 -27.56767 -26.84422 -25.66314 -23.54389 -23.01268 -21.86109 -20.77602 -20.44424 -18.82995 -17.48775 -16.86118 -16.36614 -16.00209 -15.78542 -15.26412 -15.25614 -14.90300 -14.78985 -14.48651 -14.12635 -13.92120 -13.78899 -13.14593 -12.95696 -12.82127 -12.67601 -12.46884 -12.35490 -12.16612 -11.98528 -11.81957 -11.80024 -11.67440 -11.39439 -11.35432 -10.99465 -10.71289 -10.59660 -9.37985 -9.13952 -8.30609 -6.33966 1.30081 1.36495 1.47764 2.32935 2.97505 3.05562 3.15466 3.74615 3.81708 3.95669 4.04216 4.14677 4.24702 4.32910 4.44531 4.47465 4.53177 4.56025 4.58842 4.66369 4.71829 4.82065 4.83386 4.83506 4.85452 4.97933 4.98537 5.01814 5.03984 5.13930 5.16405 5.26410 5.27777 5.39784 5.46072 5.64603 5.74189 5.95235 6.11401 6.17943 6.31071 6.37136 6.73615 7.31951 8.86343 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034182 B = 0.004894 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.940065 B = 5719.355851 C = 5782.444235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.540 5.540 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.080 4.080 6 H 0.084 0.916 7 C 0.067 3.933 8 N -0.544 5.544 9 C 0.062 3.938 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.021 3.979 13 H 0.024 0.976 14 C -0.520 4.520 15 H 0.032 0.968 16 C 0.013 3.987 17 N -0.951 5.951 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.300 1.300 21 H -0.248 1.248 22 C 0.089 3.911 23 C 0.054 3.946 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.015 0.985 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 9.973 -19.735 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.264 5.264 3 C -0.092 4.092 4 C -0.162 4.162 5 C -0.099 4.099 6 H 0.103 0.897 7 C -0.061 4.061 8 N -0.268 5.268 9 C -0.066 4.066 10 C -0.152 4.152 11 C -0.160 4.160 12 C 0.001 3.999 13 H 0.042 0.958 14 C -0.558 4.558 15 H 0.050 0.950 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.228 1.228 21 H -0.172 1.172 22 C -0.038 4.038 23 C -0.074 4.074 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.192 9.333 -20.179 22.831 hybrid contribution 0.440 0.025 1.557 1.618 sum -4.751 9.358 -18.622 21.376 Atomic orbital electron populations 1.22527 0.87301 1.02358 1.01067 1.64756 1.08884 1.15657 1.37094 1.22904 0.95863 0.89418 1.01018 1.22443 0.98122 0.95744 0.99853 1.22024 0.96302 0.96601 0.94985 0.89733 1.22118 0.99633 0.88225 0.96101 1.61932 1.42357 1.18377 1.04175 1.22098 0.91513 0.94421 0.98531 1.21623 1.01968 0.96614 0.94953 1.21918 0.99461 0.98748 0.95829 1.19062 0.94656 0.93613 0.92527 0.95790 1.21351 1.47929 0.92833 0.93686 0.94978 1.25838 0.94192 1.02542 0.95768 1.70053 1.51253 1.25604 1.12260 0.85791 0.79313 0.78317 0.78687 1.19286 1.22775 1.17220 1.21756 0.98015 0.96913 0.87149 1.23083 0.94528 0.99582 0.90210 0.90244 0.91422 0.95495 0.93427 0.89582 0.90951 0.89731 0.94457 0.91398 0.88705 0.95379 0.91893 0.90043 0.94813 0.93388 0.92581 0.96650 0.92511 0.90942 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.40 127.69 1.20 1.48 16 2 N -0.54 -11.28 5.55 -909.18 -5.05 -16.33 16 3 C 0.04 0.61 6.70 86.44 0.58 1.19 16 4 C -0.12 -2.09 6.51 31.47 0.20 -1.89 16 5 C -0.08 -1.72 3.01 -9.59 -0.03 -1.75 16 6 H 0.08 1.84 6.21 -2.39 -0.01 1.83 16 7 C 0.07 1.73 4.27 86.30 0.37 2.10 16 8 N -0.54 -17.50 4.57 -896.39 -4.10 -21.60 16 9 C 0.06 1.80 5.31 86.32 0.46 2.25 16 10 C -0.11 -3.69 6.09 30.64 0.19 -3.50 16 11 C -0.12 -5.14 4.73 30.67 0.15 -4.99 16 12 C 0.02 0.98 1.85 -11.49 -0.02 0.95 16 13 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 14 C -0.52 -30.16 9.15 25.60 0.23 -29.92 16 15 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 16 C 0.01 0.79 5.45 84.65 0.46 1.26 16 17 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.95 46.17 24.35 68.60 1.67 47.84 16 19 H -0.27 -12.28 6.89 99.48 0.69 -11.60 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 22 C 0.09 3.61 4.68 86.32 0.40 4.01 16 23 C 0.05 1.26 5.92 86.65 0.51 1.77 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.47 8.00 -2.39 -0.02 0.45 16 27 H 0.05 0.76 7.73 -2.39 -0.02 0.74 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.18 7.85 -2.38 -0.02 1.16 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.07 1.79 7.83 -2.39 -0.02 1.77 16 33 H 0.09 2.27 6.12 -2.39 -0.01 2.26 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.03 1.49 3.34 -2.39 -0.01 1.48 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 0.91 7.76 -2.39 -0.02 0.89 16 Total: -1.00 -65.27 317.94 -1.61 -66.88 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.87 Total: 10.36 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 4.71 Total: -27.02 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -8.85 Total: -98.05 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Total: -65.27 -1.61 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.721 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds