Wall clock time and date at job start Mon Mar 30 2020 04:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47885 * 111.01635 * 2 1 4 4 C 1.54911 * 104.77568 * 146.33065 * 3 2 1 5 5 C 1.55134 * 101.68701 * 322.98310 * 4 3 2 6 6 H 1.08998 * 110.70837 * 277.07837 * 5 4 3 7 7 C 1.52996 * 110.70516 * 154.01687 * 5 4 3 8 8 N 1.46901 * 109.47357 * 175.80661 * 7 5 4 9 9 C 1.46850 * 111.00296 * 163.94864 * 8 7 5 10 10 C 1.53033 * 109.52241 * 185.83708 * 9 8 7 11 11 C 1.53113 * 109.27941 * 300.82086 * 10 9 8 12 12 C 1.53114 * 109.16199 * 57.65864 * 11 10 9 13 13 H 1.08995 * 109.50812 * 62.28097 * 12 11 10 14 14 C 1.50704 * 109.50513 * 182.36627 * 12 11 10 15 15 H 1.07999 * 119.99907 * 119.99490 * 14 12 11 16 16 C 1.37870 * 119.99779 * 299.99485 * 14 12 11 17 17 N 1.31521 * 120.00134 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00131 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47069 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 120.00239 * 18 16 14 21 21 H 1.48500 * 109.47365 * 240.00262 * 18 16 14 22 22 C 1.46842 * 110.99678 * 288.15935 * 8 7 5 23 23 C 1.47441 * 111.00236 * 120.88033 * 2 1 3 24 24 H 1.08997 * 109.46936 * 299.11534 * 1 2 3 25 25 H 1.09001 * 109.47316 * 59.12504 * 1 2 3 26 26 H 1.09009 * 109.46574 * 179.12236 * 1 2 3 27 27 H 1.09005 * 110.35647 * 27.52627 * 3 2 1 28 28 H 1.08999 * 110.41690 * 265.17311 * 3 2 1 29 29 H 1.09000 * 110.99057 * 204.87477 * 4 3 2 30 30 H 1.09002 * 110.98906 * 81.09835 * 4 3 2 31 31 H 1.09007 * 109.47372 * 295.80318 * 7 5 4 32 32 H 1.08997 * 109.47729 * 55.80177 * 7 5 4 33 33 H 1.08996 * 109.46219 * 305.85908 * 9 8 7 34 34 H 1.09003 * 109.45622 * 65.83191 * 9 8 7 35 35 H 1.09002 * 109.50368 * 60.76500 * 10 9 8 36 36 H 1.08999 * 109.50075 * 180.88146 * 10 9 8 37 37 H 1.08998 * 109.52318 * 177.56354 * 11 10 9 38 38 H 1.08998 * 109.52656 * 297.74825 * 11 10 9 39 39 H 0.97003 * 119.99836 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46754 * 294.17295 * 22 8 7 41 41 H 1.09000 * 109.46521 * 54.14294 * 22 8 7 42 42 H 1.09005 * 109.88570 * 117.33694 * 23 2 1 43 43 H 1.09000 * 109.88778 * 356.14919 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3805 0.0000 4 6 3.3048 1.3022 0.8304 5 6 2.9159 0.2810 1.9316 6 1 2.3771 0.7734 2.7411 7 6 4.1570 -0.4353 2.4676 8 7 3.7717 -1.3204 3.5749 9 6 4.8324 -2.2939 3.8642 10 6 4.3409 -3.2874 4.9193 11 6 3.9601 -2.5261 6.1920 12 6 2.8887 -1.4858 5.8539 13 1 1.9942 -1.9901 5.4886 14 6 2.5499 -0.6924 7.0896 15 1 2.6973 0.3774 7.1016 16 6 2.0518 -1.3323 8.2046 17 7 1.8728 -2.6352 8.1900 18 14 1.6325 -0.3491 9.7365 19 1 1.9235 1.0874 9.4977 20 1 0.1912 -0.5159 10.0526 21 1 2.4491 -0.8371 10.8768 22 6 3.4224 -0.5444 4.7716 23 6 1.9974 -0.7065 1.1813 24 1 -0.3633 0.5000 0.8978 25 1 -0.3634 0.5274 -0.8820 26 1 -0.3633 -1.0277 -0.0157 27 1 1.2894 2.0595 0.4723 28 1 2.2160 1.7046 -1.0179 29 1 3.5495 2.2712 1.2655 30 1 4.1307 0.9284 0.2252 31 1 4.6083 -1.0262 1.6705 32 1 4.8761 0.3018 2.8250 33 1 5.0909 -2.8312 2.9518 34 1 5.7123 -1.7713 4.2396 35 1 3.4691 -3.8201 4.5394 36 1 5.1338 -4.0003 5.1452 37 1 3.5687 -3.2250 6.9312 38 1 4.8406 -2.0248 6.5939 39 1 1.5220 -3.0854 8.9744 40 1 4.3089 -0.0301 5.1427 41 1 2.6567 0.1889 4.5183 42 1 2.5698 -1.5790 0.8663 43 1 1.1756 -1.0132 1.8283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:17 Heat of formation + Delta-G solvation = -6.041319 kcal Electronic energy + Delta-G solvation = -19559.644285 eV Core-core repulsion = 16831.768009 eV Total energy + Delta-G solvation = -2727.876275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.24830 -37.79760 -34.09927 -32.58507 -31.04928 -29.85174 -28.85805 -26.25234 -24.96211 -24.30782 -21.97705 -21.32727 -20.90195 -19.67825 -18.54999 -16.47130 -16.05868 -15.37765 -15.00701 -14.57594 -14.24495 -13.92143 -13.49219 -13.31871 -13.15770 -12.70581 -12.68668 -12.29129 -12.20318 -11.79079 -11.55784 -11.45252 -11.25573 -10.97257 -10.80390 -10.65382 -10.64018 -10.54821 -10.44359 -10.06954 -9.79655 -9.43233 -8.99585 -8.67213 -8.29906 -8.26402 -7.62062 -5.96869 -4.02993 3.29510 3.37672 3.41144 4.10387 4.34643 4.49025 4.74654 4.90358 5.03453 5.33091 5.35063 5.39758 5.48123 5.56300 5.64500 5.72914 5.74878 5.83514 5.84840 5.87456 5.93341 5.99206 6.10089 6.15376 6.26406 6.31467 6.44161 6.49225 6.56439 6.74552 6.78322 6.98668 7.03809 7.12425 7.24310 7.42707 7.70379 7.76735 7.86196 8.10199 8.19294 8.49652 9.01421 9.61366 11.09057 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.005472 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.706427 B = 5116.014362 C = 5674.933336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.042 3.958 4 C -0.126 4.126 5 C -0.102 4.102 6 H 0.079 0.921 7 C 0.068 3.932 8 N -0.538 5.538 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.033 0.967 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.068 3.932 23 C 0.059 3.941 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.017 0.983 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 4.406 -13.765 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.122 4.122 6 H 0.097 0.903 7 C -0.061 4.061 8 N -0.262 5.262 9 C -0.064 4.064 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.051 0.949 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.059 4.059 23 C -0.068 4.068 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.963 3.733 -14.246 14.857 hybrid contribution 0.183 1.387 1.926 2.381 sum 2.147 5.120 -12.319 13.513 Atomic orbital electron populations 1.22517 0.88045 1.02039 1.00233 1.63624 1.07747 1.14054 1.41047 1.23023 0.95710 0.89854 0.99993 1.22746 0.97551 0.99240 0.96891 1.22379 0.96991 0.95709 0.97130 0.90260 1.22006 0.94869 0.94819 0.94410 1.61973 1.39733 1.16990 1.07533 1.22011 0.91945 0.94210 0.98193 1.21669 0.99808 0.97045 0.96959 1.21647 0.98086 0.99648 0.95488 1.18661 0.94284 0.92243 0.91223 0.94872 1.21189 1.42427 0.93763 0.97853 0.92912 1.24929 0.95525 0.94849 0.98523 1.69906 1.45598 1.07759 1.29446 0.86593 0.78024 0.80340 0.83363 1.19904 1.21050 1.21077 1.22323 0.97983 0.96179 0.89419 1.22754 0.98096 0.96852 0.89137 0.95420 0.91900 0.91387 0.93779 0.90644 0.91101 0.90770 0.91456 0.95423 0.92474 0.96064 0.92106 0.93604 0.89146 0.95253 0.93134 0.96501 0.92421 0.90312 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.07 0.55 0.78 16 2 N -0.54 -6.99 5.44 -239.47 -1.30 -8.29 16 3 C 0.04 0.48 6.73 -2.27 -0.02 0.46 16 4 C -0.13 -1.44 6.52 -24.59 -0.16 -1.60 16 5 C -0.10 -1.44 2.97 -88.80 -0.26 -1.70 16 6 H 0.08 1.25 6.51 -51.93 -0.34 0.91 16 7 C 0.07 1.02 4.31 -3.83 -0.02 1.00 16 8 N -0.54 -9.82 4.51 -234.67 -1.06 -10.87 16 9 C 0.06 1.13 5.44 -3.83 -0.02 1.11 16 10 C -0.12 -2.30 6.09 -26.66 -0.16 -2.46 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 12 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 13 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -14.12 8.57 -34.44 -0.30 -14.41 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.41 11.35 55.43 0.63 -24.78 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.07 1.44 4.53 -3.83 -0.02 1.42 16 23 C 0.06 0.84 6.40 -2.84 -0.02 0.82 16 24 H 0.03 0.32 8.10 -51.93 -0.42 -0.10 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.04 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 32 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 33 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.22 6.43 -51.93 -0.33 0.88 16 42 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 43 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -28.03 324.90 -10.74 -38.77 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.03 Total: -1.47 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.86 Total: -14.53 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -1.73 Total: -43.95 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.03 -10.74 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.730 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds