Wall clock time and date at job start Mon Mar 30 2020 04:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47885 * 111.01635 * 2 1 4 4 C 1.54911 * 104.77568 * 146.33065 * 3 2 1 5 5 C 1.55134 * 101.68701 * 322.98310 * 4 3 2 6 6 H 1.08998 * 110.70837 * 277.07837 * 5 4 3 7 7 C 1.52996 * 110.70516 * 154.01687 * 5 4 3 8 8 N 1.46901 * 109.47357 * 175.80661 * 7 5 4 9 9 C 1.46850 * 111.00296 * 163.94864 * 8 7 5 10 10 C 1.53033 * 109.52241 * 185.83708 * 9 8 7 11 11 C 1.53113 * 109.27941 * 300.82086 * 10 9 8 12 12 C 1.53114 * 109.16199 * 57.65864 * 11 10 9 13 13 H 1.08995 * 109.50812 * 62.28097 * 12 11 10 14 14 C 1.50704 * 109.50513 * 182.36627 * 12 11 10 15 15 H 1.07999 * 119.99907 * 119.99490 * 14 12 11 16 16 C 1.37870 * 119.99779 * 299.99485 * 14 12 11 17 17 N 1.31521 * 120.00134 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00131 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47069 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 120.00239 * 18 16 14 21 21 H 1.48500 * 109.47365 * 240.00262 * 18 16 14 22 22 C 1.46842 * 110.99678 * 288.15935 * 8 7 5 23 23 C 1.47441 * 111.00236 * 120.88033 * 2 1 3 24 24 H 1.08997 * 109.46936 * 299.11534 * 1 2 3 25 25 H 1.09001 * 109.47316 * 59.12504 * 1 2 3 26 26 H 1.09009 * 109.46574 * 179.12236 * 1 2 3 27 27 H 1.09005 * 110.35647 * 27.52627 * 3 2 1 28 28 H 1.08999 * 110.41690 * 265.17311 * 3 2 1 29 29 H 1.09000 * 110.99057 * 204.87477 * 4 3 2 30 30 H 1.09002 * 110.98906 * 81.09835 * 4 3 2 31 31 H 1.09007 * 109.47372 * 295.80318 * 7 5 4 32 32 H 1.08997 * 109.47729 * 55.80177 * 7 5 4 33 33 H 1.08996 * 109.46219 * 305.85908 * 9 8 7 34 34 H 1.09003 * 109.45622 * 65.83191 * 9 8 7 35 35 H 1.09002 * 109.50368 * 60.76500 * 10 9 8 36 36 H 1.08999 * 109.50075 * 180.88146 * 10 9 8 37 37 H 1.08998 * 109.52318 * 177.56354 * 11 10 9 38 38 H 1.08998 * 109.52656 * 297.74825 * 11 10 9 39 39 H 0.97003 * 119.99836 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46754 * 294.17295 * 22 8 7 41 41 H 1.09000 * 109.46521 * 54.14294 * 22 8 7 42 42 H 1.09005 * 109.88570 * 117.33694 * 23 2 1 43 43 H 1.09000 * 109.88778 * 356.14919 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3805 0.0000 4 6 3.3048 1.3022 0.8304 5 6 2.9159 0.2810 1.9316 6 1 2.3771 0.7734 2.7411 7 6 4.1570 -0.4353 2.4676 8 7 3.7717 -1.3204 3.5749 9 6 4.8324 -2.2939 3.8642 10 6 4.3409 -3.2874 4.9193 11 6 3.9601 -2.5261 6.1920 12 6 2.8887 -1.4858 5.8539 13 1 1.9942 -1.9901 5.4886 14 6 2.5499 -0.6924 7.0896 15 1 2.6973 0.3774 7.1016 16 6 2.0518 -1.3323 8.2046 17 7 1.8728 -2.6352 8.1900 18 14 1.6325 -0.3491 9.7365 19 1 1.9235 1.0874 9.4977 20 1 0.1912 -0.5159 10.0526 21 1 2.4491 -0.8371 10.8768 22 6 3.4224 -0.5444 4.7716 23 6 1.9974 -0.7065 1.1813 24 1 -0.3633 0.5000 0.8978 25 1 -0.3634 0.5274 -0.8820 26 1 -0.3633 -1.0277 -0.0157 27 1 1.2894 2.0595 0.4723 28 1 2.2160 1.7046 -1.0179 29 1 3.5495 2.2712 1.2655 30 1 4.1307 0.9284 0.2252 31 1 4.6083 -1.0262 1.6705 32 1 4.8761 0.3018 2.8250 33 1 5.0909 -2.8312 2.9518 34 1 5.7123 -1.7713 4.2396 35 1 3.4691 -3.8201 4.5394 36 1 5.1338 -4.0003 5.1452 37 1 3.5687 -3.2250 6.9312 38 1 4.8406 -2.0248 6.5939 39 1 1.5220 -3.0854 8.9744 40 1 4.3089 -0.0301 5.1427 41 1 2.6567 0.1889 4.5183 42 1 2.5698 -1.5790 0.8663 43 1 1.1756 -1.0132 1.8283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:17 Heat of formation + Delta-G solvation = -23.752119 kcal Electronic energy + Delta-G solvation = -19560.412283 eV Core-core repulsion = 16831.768009 eV Total energy + Delta-G solvation = -2728.644273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45137 -39.22771 -35.78136 -34.19059 -32.40600 -31.68706 -29.97179 -27.38427 -26.96390 -25.56524 -23.47890 -22.99860 -21.90991 -20.86725 -20.29890 -18.44536 -17.29396 -16.68589 -16.41693 -16.25844 -15.68748 -15.08047 -14.89687 -14.82115 -14.41566 -14.33430 -14.06782 -13.87402 -13.45684 -13.37667 -12.89529 -12.79303 -12.60763 -12.48367 -12.40895 -12.20423 -11.90402 -11.83544 -11.76384 -11.66671 -11.51654 -11.30540 -10.83438 -10.62127 -10.38662 -9.28323 -9.08940 -8.09310 -6.23602 1.38279 1.39959 1.51145 2.41219 3.06244 3.13573 3.17566 3.73712 3.82189 3.92181 4.21206 4.28535 4.34541 4.42211 4.48775 4.51427 4.55529 4.58195 4.63620 4.71171 4.77089 4.82247 4.85950 4.90940 4.98124 5.00260 5.03008 5.13059 5.15659 5.17369 5.22932 5.39931 5.43759 5.52862 5.62651 5.96868 6.01417 6.13173 6.13744 6.21728 6.40596 6.46442 6.89576 7.44437 8.95453 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.005472 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.706427 B = 5116.014362 C = 5674.933336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.547 5.547 3 C 0.041 3.959 4 C -0.116 4.116 5 C -0.102 4.102 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.547 5.547 9 C 0.067 3.933 10 C -0.110 4.110 11 C -0.104 4.104 12 C 0.053 3.947 13 H -0.006 1.006 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.086 3.914 23 C 0.064 3.936 24 H 0.018 0.982 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.011 0.989 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 5.375 -15.224 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.087 4.087 4 C -0.155 4.155 5 C -0.122 4.122 6 H 0.074 0.926 7 C -0.057 4.057 8 N -0.271 5.271 9 C -0.061 4.061 10 C -0.148 4.148 11 C -0.142 4.142 12 C 0.034 3.966 13 H 0.012 0.988 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.042 4.042 23 C -0.064 4.064 24 H 0.037 0.963 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.022 4.710 -15.723 16.689 hybrid contribution -0.178 1.062 2.354 2.589 sum 2.844 5.772 -13.369 14.837 Atomic orbital electron populations 1.22554 0.87377 1.02227 1.00709 1.63671 1.08491 1.15025 1.39941 1.23119 0.95542 0.88924 1.01084 1.22725 0.97968 0.98902 0.95871 1.22326 0.96439 0.96240 0.97234 0.92621 1.22074 0.95365 0.94715 0.93501 1.61912 1.40814 1.17496 1.06922 1.22031 0.91490 0.93697 0.98855 1.21580 1.00222 0.97544 0.95468 1.21458 0.97023 0.98880 0.96879 1.18582 0.93347 0.92917 0.91761 0.98760 1.21545 1.42801 0.93871 0.99182 0.93287 1.25710 0.95401 0.95815 1.01502 1.70048 1.46052 1.09140 1.30254 0.85585 0.77811 0.79116 0.79614 1.19244 1.20612 1.20487 1.21939 0.97353 0.95228 0.89690 1.22635 0.97334 0.97073 0.89327 0.96299 0.89951 0.91510 0.93795 0.88761 0.89979 0.89504 0.89317 0.94904 0.89163 0.95611 0.93206 0.91229 0.92486 0.95989 0.93067 0.97065 0.92935 0.90628 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.12 127.69 1.16 1.60 16 2 N -0.55 -13.28 5.44 -911.56 -4.96 -18.24 16 3 C 0.04 0.82 6.73 86.77 0.58 1.41 16 4 C -0.12 -2.36 6.52 31.98 0.21 -2.15 16 5 C -0.10 -2.75 2.97 -9.62 -0.03 -2.78 16 6 H 0.06 1.76 6.51 -2.39 -0.02 1.75 16 7 C 0.07 1.99 4.31 86.30 0.37 2.36 16 8 N -0.55 -19.45 4.51 -896.36 -4.04 -23.50 16 9 C 0.07 2.22 5.44 86.32 0.47 2.69 16 10 C -0.11 -4.26 6.09 30.64 0.19 -4.08 16 11 C -0.10 -5.08 5.02 30.67 0.15 -4.92 16 12 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 13 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 14 C -0.54 -30.25 8.57 25.60 0.22 -30.03 16 15 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 16 C 0.01 0.81 5.30 84.65 0.45 1.26 16 17 N -0.92 -53.91 11.35 21.45 0.24 -53.67 16 18 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.09 3.68 4.53 86.33 0.39 4.07 16 23 C 0.06 1.78 6.40 86.65 0.55 2.34 16 24 H 0.02 0.44 8.10 -2.39 -0.02 0.42 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 0.89 7.79 -2.38 -0.02 0.88 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 31 H 0.09 2.14 7.68 -2.38 -0.02 2.12 16 32 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 33 H 0.09 2.45 7.96 -2.39 -0.02 2.44 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 3.15 6.15 -2.39 -0.01 3.13 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.05 2.28 6.43 -2.39 -0.02 2.26 16 42 H 0.08 2.13 7.70 -2.38 -0.02 2.11 16 43 H 0.03 1.13 7.58 -2.39 -0.02 1.11 16 Total: -1.00 -61.60 324.90 -1.10 -62.70 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.94 Total: 11.96 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.70 Total: -25.54 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -8.76 Total: -95.41 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.60 -1.10 -62.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.948 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds