Wall clock time and date at job start Mon Mar 30 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47847 * 111.00028 * 2 1 4 4 C 1.54908 * 104.79547 * 146.36319 * 3 2 1 5 5 C 1.55135 * 101.65455 * 322.93457 * 4 3 2 6 6 H 1.08999 * 110.71008 * 277.26825 * 5 4 3 7 7 C 1.53005 * 110.70839 * 154.03025 * 5 4 3 8 8 C 1.52997 * 109.47184 * 179.97438 * 7 5 4 9 9 N 1.46908 * 109.46910 * 174.45070 * 8 7 5 10 10 C 1.47899 * 110.99806 * 176.11135 * 9 8 7 11 11 C 1.53998 * 107.05622 * 214.15735 * 10 9 8 12 12 C 1.54596 * 105.13860 * 1.22107 * 11 10 9 13 13 C 1.48534 * 110.99886 * 58.71296 * 9 8 7 14 14 H 1.08993 * 110.66537 * 41.28288 * 13 9 8 15 15 C 1.50706 * 110.66598 * 278.15457 * 13 9 8 16 16 H 1.07998 * 119.99732 * 0.02562 * 15 13 9 17 17 C 1.37879 * 119.99319 * 179.97438 * 15 13 9 18 18 N 1.31517 * 119.99318 * 179.97438 * 17 15 13 19 19 Si 1.86790 * 120.00516 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47125 * 89.99805 * 19 17 15 21 21 H 1.48503 * 109.47132 * 209.99894 * 19 17 15 22 22 H 1.48505 * 109.47066 * 329.99824 * 19 17 15 23 23 C 1.47440 * 111.00418 * 120.84618 * 2 1 3 24 24 H 1.09003 * 109.47019 * 299.15462 * 1 2 3 25 25 H 1.08996 * 109.47265 * 59.15165 * 1 2 3 26 26 H 1.08994 * 109.47176 * 179.15629 * 1 2 3 27 27 H 1.08997 * 110.38099 * 265.19508 * 3 2 1 28 28 H 1.09004 * 110.37269 * 27.43359 * 3 2 1 29 29 H 1.09004 * 110.98682 * 81.02498 * 4 3 2 30 30 H 1.09003 * 110.99448 * 204.80134 * 4 3 2 31 31 H 1.08998 * 109.47141 * 299.95391 * 7 5 4 32 32 H 1.09002 * 109.46646 * 59.94570 * 7 5 4 33 33 H 1.08996 * 109.47352 * 294.45221 * 8 7 5 34 34 H 1.08994 * 109.46788 * 54.45617 * 8 7 5 35 35 H 1.09001 * 109.91725 * 333.50317 * 10 9 8 36 36 H 1.09002 * 109.91997 * 94.60890 * 10 9 8 37 37 H 1.08997 * 110.31025 * 120.14064 * 11 10 9 38 38 H 1.08998 * 110.30727 * 242.21304 * 11 10 9 39 39 H 1.09001 * 110.72463 * 140.31767 * 12 11 10 40 40 H 1.08999 * 110.72674 * 263.42514 * 12 11 10 41 41 H 0.97002 * 119.99764 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.88417 * 356.15140 * 23 2 1 43 43 H 1.09000 * 109.88447 * 117.33354 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9159 0.2821 1.9314 6 1 2.3745 0.7745 2.7392 7 6 4.1570 -0.4340 2.4678 8 6 3.7420 -1.4316 3.5511 9 7 4.9129 -2.2125 3.9722 10 6 4.5696 -3.1242 5.0850 11 6 5.8111 -3.2182 5.9913 12 6 6.8573 -2.2840 5.3411 13 6 5.9855 -1.3257 4.4913 14 1 5.5641 -0.5357 5.1129 15 6 6.7878 -0.7414 3.3573 16 1 6.5410 -0.9917 2.3361 17 6 7.8362 0.1136 3.6236 18 7 8.5367 0.6231 2.6340 19 14 8.2625 0.5470 5.3898 20 1 9.2509 -0.4292 5.9143 21 1 8.8426 1.9132 5.4380 22 1 7.0329 0.5018 6.2212 23 6 1.9975 -0.7057 1.1817 24 1 -0.3633 0.5007 0.8975 25 1 -0.3633 0.5269 -0.8822 26 1 -0.3633 -1.0275 -0.0151 27 1 2.2148 1.7040 -1.0181 28 1 1.2881 2.0596 0.4708 29 1 4.1302 0.9282 0.2242 30 1 3.5499 2.2721 1.2635 31 1 4.6497 -0.9660 1.6540 32 1 4.8442 0.2983 2.8917 33 1 3.3386 -0.8911 4.4074 34 1 2.9810 -2.1033 3.1540 35 1 3.7280 -2.7216 5.6487 36 1 4.3167 -4.1095 4.6933 37 1 5.5715 -2.8755 6.9979 38 1 6.1822 -4.2427 6.0194 39 1 7.4074 -1.7316 6.1029 40 1 7.5406 -2.8510 4.7089 41 1 9.2746 1.2243 2.8213 42 1 1.1756 -1.0121 1.8288 43 1 2.5697 -1.5785 0.8672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:54 Heat of formation + Delta-G solvation = 6.253951 kcal Electronic energy + Delta-G solvation = -19679.356043 eV Core-core repulsion = 16952.012931 eV Total energy + Delta-G solvation = -2727.343112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.07090 -38.07496 -33.85444 -32.55473 -31.32817 -29.29703 -28.95547 -26.79138 -25.06655 -24.15746 -21.99993 -20.84305 -20.30610 -19.55952 -19.18250 -16.74110 -15.99012 -15.47072 -15.00118 -14.79664 -14.23415 -13.71492 -13.59612 -13.32362 -13.20931 -12.86946 -12.59197 -12.40244 -11.93043 -11.72304 -11.45982 -11.43049 -11.18354 -11.09447 -10.88324 -10.61004 -10.56887 -10.32421 -10.11731 -9.99726 -9.87491 -9.76898 -9.54101 -9.01408 -8.49748 -8.20665 -7.44617 -6.03721 -3.98925 3.27413 3.36439 3.36975 4.15972 4.41986 4.75987 4.91577 5.02041 5.18962 5.22726 5.36795 5.43812 5.48567 5.49972 5.52410 5.70778 5.72938 5.80973 5.83276 5.87926 5.96906 6.10239 6.14050 6.18067 6.25887 6.32700 6.36208 6.39713 6.45313 6.60122 6.62393 6.75599 6.80747 7.00807 7.08902 7.18035 7.25181 7.36927 7.65886 7.84996 8.07441 8.66907 9.07022 9.58613 11.08527 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.006585 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.167435 B = 4250.969884 C = 5230.046499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.041 3.959 4 C -0.122 4.122 5 C -0.108 4.108 6 H 0.064 0.936 7 C -0.101 4.101 8 C 0.061 3.939 9 N -0.505 5.505 10 C 0.037 3.963 11 C -0.132 4.132 12 C -0.129 4.129 13 C 0.171 3.829 14 H 0.009 0.991 15 C -0.489 4.489 16 H 0.089 0.911 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.869 3.131 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.046 3.954 24 H 0.023 0.977 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.263 0.737 42 H 0.047 0.953 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 -1.292 0.547 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.128 4.128 6 H 0.082 0.918 7 C -0.139 4.139 8 C -0.067 4.067 9 N -0.230 5.230 10 C -0.092 4.092 11 C -0.170 4.170 12 C -0.168 4.168 13 C 0.063 3.937 14 H 0.026 0.974 15 C -0.527 4.527 16 H 0.107 0.893 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.698 3.302 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.081 4.081 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.335 -1.726 -0.418 12.462 hybrid contribution -0.349 1.141 2.548 2.814 sum -12.684 -0.585 2.130 12.875 Atomic orbital electron populations 1.22505 0.88449 1.01665 1.00104 1.63579 1.07231 1.14580 1.40743 1.23067 0.96092 0.89120 1.00411 1.22728 0.97130 0.99387 0.96748 1.22452 0.97435 0.96018 0.96876 0.91776 1.21787 0.95130 0.98479 0.98477 1.22103 0.92636 0.94992 0.97014 1.64738 1.07673 1.17942 1.32599 1.22769 0.96166 0.98006 0.92227 1.22402 0.96612 1.00149 0.97878 1.22880 0.97804 0.97792 0.98310 1.20841 0.88827 0.89820 0.94182 0.97372 1.20935 1.12583 1.25287 0.93869 0.89321 1.24857 0.96045 0.95930 0.96171 1.69876 1.20595 1.32407 1.30791 0.87077 0.79015 0.77436 0.86701 1.20320 1.21988 1.19427 1.22987 0.97500 0.97912 0.89719 0.95885 0.91799 0.91654 0.90581 0.94155 0.89931 0.90984 0.90641 0.88538 0.96646 0.92588 0.95343 0.91609 0.92919 0.92076 0.93405 0.90628 0.92742 0.93479 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.12 60.06 0.55 0.79 16 2 N -0.54 -7.43 5.44 -239.53 -1.30 -8.73 16 3 C 0.04 0.54 6.73 -2.30 -0.02 0.52 16 4 C -0.12 -1.83 6.52 -24.59 -0.16 -1.99 16 5 C -0.11 -1.68 2.98 -88.80 -0.26 -1.94 16 6 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.10 -1.91 3.25 -26.73 -0.09 -1.99 16 8 C 0.06 1.12 4.75 -3.82 -0.02 1.11 16 9 N -0.51 -10.47 5.10 -223.99 -1.14 -11.61 16 10 C 0.04 0.65 6.70 -2.75 -0.02 0.63 16 11 C -0.13 -2.33 6.93 -25.37 -0.18 -2.50 16 12 C -0.13 -2.78 5.49 -24.87 -0.14 -2.92 16 13 C 0.17 3.97 1.40 -66.93 -0.09 3.88 16 14 H 0.01 0.21 6.90 -51.93 -0.36 -0.15 16 15 C -0.49 -13.06 6.82 -34.44 -0.23 -13.29 16 16 H 0.09 2.59 6.55 -52.49 -0.34 2.24 16 17 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 18 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 19 Si 0.87 21.25 24.75 -169.99 -4.21 17.04 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.39 6.46 56.52 0.37 -6.03 16 23 C 0.05 0.67 5.55 -2.84 -0.02 0.65 16 24 H 0.02 0.25 8.10 -51.93 -0.42 -0.18 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.49 7.78 -51.93 -0.40 0.08 16 29 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.58 7.21 -51.93 -0.37 1.21 16 32 H 0.10 2.15 6.03 -51.93 -0.31 1.83 16 33 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 34 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 35 H 0.03 0.47 7.67 -51.93 -0.40 0.07 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 1.03 5.42 -51.93 -0.28 0.75 16 40 H 0.07 1.70 8.05 -51.93 -0.42 1.28 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.62 7.58 -51.93 -0.39 0.23 16 43 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -28.45 317.50 -9.74 -38.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.88 Total: 1.30 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.77 Total: -15.18 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -1.67 Total: -46.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.21 Total: 17.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.45 -9.74 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.448 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds