Wall clock time and date at job start Mon Mar 30 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47906 * 110.99784 * 2 1 4 4 C 1.53996 * 107.05712 * 145.84620 * 3 2 1 5 5 C 1.54594 * 105.13924 * 358.77684 * 4 3 2 6 6 H 1.09005 * 110.72917 * 96.58248 * 5 4 3 7 7 C 1.53008 * 110.72509 * 219.68380 * 5 4 3 8 8 C 1.52992 * 109.47369 * 182.54842 * 7 5 4 9 9 N 1.46900 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.47443 * 111.00227 * 290.12352 * 9 8 7 11 11 C 1.54312 * 107.23612 * 236.74273 * 10 9 8 12 12 C 1.55142 * 103.17714 * 337.62814 * 11 10 9 13 13 C 1.47844 * 110.99982 * 169.28196 * 9 8 7 14 14 H 1.09007 * 110.37325 * 27.42750 * 13 9 8 15 15 C 1.50697 * 110.37621 * 265.19521 * 13 9 8 16 16 H 1.08001 * 119.99923 * 359.97438 * 15 13 9 17 17 C 1.37880 * 120.00327 * 179.97438 * 15 13 9 18 18 N 1.31523 * 119.99802 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00368 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46911 * 90.00115 * 19 17 15 21 21 H 1.48500 * 109.47193 * 210.00106 * 19 17 15 22 22 H 1.48506 * 109.47087 * 330.00654 * 19 17 15 23 23 C 1.48725 * 111.04817 * 117.57728 * 2 1 3 24 24 H 1.08999 * 109.47404 * 60.12000 * 1 2 3 25 25 H 1.09002 * 109.47183 * 180.12485 * 1 2 3 26 26 H 1.09006 * 109.47315 * 300.12053 * 1 2 3 27 27 H 1.08994 * 109.91774 * 26.49299 * 3 2 1 28 28 H 1.09001 * 110.08262 * 265.28723 * 3 2 1 29 29 H 1.08998 * 110.30892 * 239.86209 * 4 3 2 30 30 H 1.09002 * 110.39288 * 117.73628 * 4 3 2 31 31 H 1.08998 * 109.46627 * 62.54630 * 7 5 4 32 32 H 1.08999 * 109.46835 * 302.55344 * 7 5 4 33 33 H 1.08998 * 109.47419 * 60.00273 * 8 7 5 34 34 H 1.08999 * 109.47551 * 300.00063 * 8 7 5 35 35 H 1.08997 * 109.88254 * 117.33308 * 10 9 8 36 36 H 1.09003 * 109.88840 * 356.15438 * 10 9 8 37 37 H 1.09002 * 110.70596 * 96.10119 * 11 10 9 38 38 H 1.09005 * 110.70742 * 219.16269 * 11 10 9 39 39 H 1.09003 * 110.98867 * 153.83100 * 12 11 10 40 40 H 1.08996 * 110.99420 * 277.65160 * 12 11 10 41 41 H 0.96993 * 119.99678 * 179.97438 * 18 17 15 42 42 H 1.09007 * 110.83742 * 81.96237 * 23 2 1 43 43 H 1.09004 * 110.58761 * 318.77198 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3808 0.0000 4 6 3.2982 1.3660 0.8265 5 6 3.4491 -0.0929 1.3153 6 1 4.1141 -0.6532 0.6579 7 6 3.9589 -0.1308 2.7574 8 6 4.1581 -1.5847 3.1900 9 7 4.6481 -1.6210 4.5743 10 6 6.0330 -1.1219 4.6580 11 6 6.8828 -2.2371 5.3025 12 6 5.8326 -3.0836 6.0691 13 6 4.6102 -2.9969 5.1139 14 1 4.7052 -3.7237 4.3070 15 6 3.3313 -3.2261 5.8773 16 1 2.6040 -2.4324 5.9631 17 6 3.0897 -4.4492 6.4663 18 7 3.9757 -5.4156 6.3623 19 14 1.5047 -4.7331 7.4132 20 1 0.4628 -5.2507 6.4904 21 1 1.7444 -5.7226 8.4942 22 1 1.0469 -3.4515 8.0077 23 6 2.0031 -0.6426 1.2303 24 1 -0.3634 0.5120 -0.8910 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8889 27 1 1.2757 2.0561 0.4571 28 1 2.2116 1.7001 -1.0203 29 1 3.2135 2.0429 1.6766 30 1 4.1478 1.6462 0.2037 31 1 3.2306 0.3468 3.4128 32 1 4.9085 0.4007 2.8212 33 1 4.8864 -2.0623 2.5346 34 1 3.2086 -2.1161 3.1262 35 1 6.0671 -0.2252 5.2766 36 1 6.4082 -0.9002 3.6589 37 1 7.3766 -2.8363 4.5375 38 1 7.6145 -1.8148 5.9913 39 1 6.1701 -4.1137 6.1842 40 1 5.6041 -2.6387 7.0375 41 1 3.8058 -6.2759 6.7769 42 1 2.0094 -1.7279 1.1294 43 1 1.4245 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:59 Heat of formation + Delta-G solvation = -3.504022 kcal Electronic energy + Delta-G solvation = -19268.497206 eV Core-core repulsion = 16540.730956 eV Total energy + Delta-G solvation = -2727.766250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.13353 -37.84251 -34.06225 -32.52168 -31.24731 -29.29661 -28.22917 -26.90477 -25.12003 -24.27642 -22.18498 -20.89855 -20.18670 -19.53348 -19.22971 -16.37149 -16.04770 -15.52877 -15.01703 -14.71376 -14.37370 -14.07903 -13.77331 -13.23990 -13.12618 -12.70667 -12.38450 -12.20073 -11.84625 -11.72055 -11.51400 -11.43908 -11.20319 -11.04321 -10.91083 -10.78290 -10.57573 -10.40119 -10.25774 -10.06291 -9.95095 -9.69644 -9.52074 -8.94851 -8.45836 -8.36802 -7.16881 -5.97406 -3.97846 3.33499 3.40035 3.44586 4.02094 4.44994 4.67014 4.70797 4.86629 5.12631 5.29401 5.33630 5.35863 5.39601 5.54057 5.63602 5.64711 5.68732 5.78713 5.78806 5.83889 5.85771 5.94954 6.02661 6.12988 6.18184 6.25051 6.31929 6.36498 6.58150 6.63956 6.68560 6.71353 6.87092 7.00886 7.07497 7.14156 7.48684 7.58543 7.91831 8.18310 8.32543 8.59179 9.08685 9.65894 11.12026 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.005766 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.925743 B = 4854.506462 C = 6041.999973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.036 3.964 4 C -0.127 4.127 5 C -0.089 4.089 6 H 0.079 0.921 7 C -0.103 4.103 8 C 0.060 3.940 9 N -0.527 5.527 10 C 0.046 3.954 11 C -0.152 4.152 12 C -0.103 4.103 13 C 0.209 3.791 14 H 0.012 0.988 15 C -0.492 4.492 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.039 3.961 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.259 0.741 42 H 0.085 0.915 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 11.050 -10.089 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.092 4.092 4 C -0.165 4.165 5 C -0.108 4.108 6 H 0.097 0.903 7 C -0.141 4.141 8 C -0.069 4.069 9 N -0.252 5.252 10 C -0.082 4.082 11 C -0.190 4.190 12 C -0.142 4.142 13 C 0.103 3.897 14 H 0.030 0.970 15 C -0.531 4.531 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.088 4.088 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.060 10.900 -10.214 14.975 hybrid contribution -0.601 -0.341 0.737 1.011 sum -1.661 10.558 -9.477 14.285 Atomic orbital electron populations 1.22497 0.88152 1.02228 1.00386 1.64726 1.07889 1.14705 1.37810 1.22843 0.96057 0.90037 1.00271 1.22465 0.97217 0.97436 0.99380 1.22080 0.96220 0.95200 0.97325 0.90256 1.21618 1.00985 0.97947 0.93588 1.22111 1.00130 0.94991 0.89623 1.63604 1.18395 1.26089 1.17079 1.22717 0.89580 0.97714 0.98210 1.22882 0.98532 0.98084 0.99505 1.22692 0.94415 0.98637 0.98479 1.20196 0.94564 0.82352 0.92569 0.96986 1.21059 1.02843 0.97328 1.31853 0.91972 1.24953 0.96742 0.96034 0.96638 1.69963 1.34728 1.03709 1.45206 0.86557 0.83667 0.77912 0.79620 1.20857 1.21376 1.19890 1.23391 0.94799 1.00097 0.90518 0.91699 0.91212 0.95431 0.94060 0.90763 0.91337 0.91264 0.91429 0.92346 0.96298 0.90810 0.92247 0.94530 0.93045 0.92764 0.91039 0.92567 0.93122 0.89711 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.40 60.06 0.56 0.74 16 2 N -0.53 -6.65 5.55 -238.54 -1.32 -7.97 16 3 C 0.04 0.40 6.70 -2.75 -0.02 0.38 16 4 C -0.13 -1.41 6.51 -25.37 -0.17 -1.58 16 5 C -0.09 -1.16 3.06 -88.76 -0.27 -1.43 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.10 -1.55 4.62 -26.73 -0.12 -1.67 16 8 C 0.06 1.13 4.41 -3.83 -0.02 1.11 16 9 N -0.53 -11.39 4.80 -224.46 -1.08 -12.47 16 10 C 0.05 0.87 6.21 -2.84 -0.02 0.85 16 11 C -0.15 -2.93 6.93 -24.91 -0.17 -3.11 16 12 C -0.10 -2.46 5.89 -24.33 -0.14 -2.60 16 13 C 0.21 5.29 2.29 -67.08 -0.15 5.14 16 14 H 0.01 0.34 7.81 -51.93 -0.41 -0.06 16 15 C -0.49 -13.66 8.83 -34.44 -0.30 -13.96 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.06 1.59 5.34 -17.81 -0.10 1.50 16 18 N -0.90 -25.79 12.28 55.43 0.68 -25.11 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.04 0.54 5.32 -1.79 -0.01 0.53 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.29 8.01 -51.93 -0.42 -0.12 16 27 H 0.04 0.43 7.73 -51.93 -0.40 0.03 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.74 7.85 -51.93 -0.41 0.34 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.07 8.05 -51.93 -0.42 0.66 16 32 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 33 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 34 H 0.07 1.49 7.46 -51.93 -0.39 1.10 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.62 6.91 -51.93 -0.36 0.26 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.82 7.59 -51.93 -0.39 1.42 16 40 H 0.06 1.39 8.06 -51.93 -0.42 0.97 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 43 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -28.62 330.69 -10.83 -39.45 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.14 Total: -1.31 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.93 Total: -14.10 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -1.72 Total: -45.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.62 -10.83 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.941 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds