Wall clock time and date at job start Mon Mar 30 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47906 * 110.99784 * 2 1 4 4 C 1.53996 * 107.05712 * 145.84620 * 3 2 1 5 5 C 1.54594 * 105.13924 * 358.77684 * 4 3 2 6 6 H 1.09005 * 110.72917 * 96.58248 * 5 4 3 7 7 C 1.53008 * 110.72509 * 219.68380 * 5 4 3 8 8 C 1.52992 * 109.47369 * 182.54842 * 7 5 4 9 9 N 1.46900 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.47443 * 111.00227 * 290.12352 * 9 8 7 11 11 C 1.54312 * 107.23612 * 236.74273 * 10 9 8 12 12 C 1.55142 * 103.17714 * 337.62814 * 11 10 9 13 13 C 1.47844 * 110.99982 * 169.28196 * 9 8 7 14 14 H 1.09007 * 110.37325 * 27.42750 * 13 9 8 15 15 C 1.50697 * 110.37621 * 265.19521 * 13 9 8 16 16 H 1.08001 * 119.99923 * 359.97438 * 15 13 9 17 17 C 1.37880 * 120.00327 * 179.97438 * 15 13 9 18 18 N 1.31523 * 119.99802 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00368 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46911 * 90.00115 * 19 17 15 21 21 H 1.48500 * 109.47193 * 210.00106 * 19 17 15 22 22 H 1.48506 * 109.47087 * 330.00654 * 19 17 15 23 23 C 1.48725 * 111.04817 * 117.57728 * 2 1 3 24 24 H 1.08999 * 109.47404 * 60.12000 * 1 2 3 25 25 H 1.09002 * 109.47183 * 180.12485 * 1 2 3 26 26 H 1.09006 * 109.47315 * 300.12053 * 1 2 3 27 27 H 1.08994 * 109.91774 * 26.49299 * 3 2 1 28 28 H 1.09001 * 110.08262 * 265.28723 * 3 2 1 29 29 H 1.08998 * 110.30892 * 239.86209 * 4 3 2 30 30 H 1.09002 * 110.39288 * 117.73628 * 4 3 2 31 31 H 1.08998 * 109.46627 * 62.54630 * 7 5 4 32 32 H 1.08999 * 109.46835 * 302.55344 * 7 5 4 33 33 H 1.08998 * 109.47419 * 60.00273 * 8 7 5 34 34 H 1.08999 * 109.47551 * 300.00063 * 8 7 5 35 35 H 1.08997 * 109.88254 * 117.33308 * 10 9 8 36 36 H 1.09003 * 109.88840 * 356.15438 * 10 9 8 37 37 H 1.09002 * 110.70596 * 96.10119 * 11 10 9 38 38 H 1.09005 * 110.70742 * 219.16269 * 11 10 9 39 39 H 1.09003 * 110.98867 * 153.83100 * 12 11 10 40 40 H 1.08996 * 110.99420 * 277.65160 * 12 11 10 41 41 H 0.96993 * 119.99678 * 179.97438 * 18 17 15 42 42 H 1.09007 * 110.83742 * 81.96237 * 23 2 1 43 43 H 1.09004 * 110.58761 * 318.77198 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3808 0.0000 4 6 3.2982 1.3660 0.8265 5 6 3.4491 -0.0929 1.3153 6 1 4.1141 -0.6532 0.6579 7 6 3.9589 -0.1308 2.7574 8 6 4.1581 -1.5847 3.1900 9 7 4.6481 -1.6210 4.5743 10 6 6.0330 -1.1219 4.6580 11 6 6.8828 -2.2371 5.3025 12 6 5.8326 -3.0836 6.0691 13 6 4.6102 -2.9969 5.1139 14 1 4.7052 -3.7237 4.3070 15 6 3.3313 -3.2261 5.8773 16 1 2.6040 -2.4324 5.9631 17 6 3.0897 -4.4492 6.4663 18 7 3.9757 -5.4156 6.3623 19 14 1.5047 -4.7331 7.4132 20 1 0.4628 -5.2507 6.4904 21 1 1.7444 -5.7226 8.4942 22 1 1.0469 -3.4515 8.0077 23 6 2.0031 -0.6426 1.2303 24 1 -0.3634 0.5120 -0.8910 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8889 27 1 1.2757 2.0561 0.4571 28 1 2.2116 1.7001 -1.0203 29 1 3.2135 2.0429 1.6766 30 1 4.1478 1.6462 0.2037 31 1 3.2306 0.3468 3.4128 32 1 4.9085 0.4007 2.8212 33 1 4.8864 -2.0623 2.5346 34 1 3.2086 -2.1161 3.1262 35 1 6.0671 -0.2252 5.2766 36 1 6.4082 -0.9002 3.6589 37 1 7.3766 -2.8363 4.5375 38 1 7.6145 -1.8148 5.9913 39 1 6.1701 -4.1137 6.1842 40 1 5.6041 -2.6387 7.0375 41 1 3.8058 -6.2759 6.7769 42 1 2.0094 -1.7279 1.1294 43 1 1.4245 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:59 Heat of formation + Delta-G solvation = -21.840785 kcal Electronic energy + Delta-G solvation = -19269.292348 eV Core-core repulsion = 16540.730956 eV Total energy + Delta-G solvation = -2728.561392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26161 -39.41315 -35.41186 -34.49206 -32.55545 -30.53692 -30.05038 -28.11289 -26.48436 -26.00959 -23.54654 -21.90560 -21.74951 -20.99217 -20.77244 -18.44756 -17.08949 -16.98547 -16.48152 -16.24485 -15.88654 -15.49505 -14.77258 -14.61106 -14.40077 -14.22430 -14.01266 -13.53901 -13.41986 -13.06013 -12.92768 -12.66757 -12.61363 -12.53215 -12.42043 -12.27966 -12.12560 -11.86856 -11.73265 -11.48796 -11.41127 -11.39582 -11.14245 -10.96374 -10.48914 -9.41594 -8.91796 -8.11267 -6.19605 1.40473 1.41194 1.52326 2.42623 3.05744 3.17919 3.41436 3.67936 3.76144 4.04392 4.05585 4.16995 4.27716 4.31968 4.39484 4.45733 4.52910 4.59154 4.60183 4.72824 4.75216 4.77533 4.86608 4.90821 4.95529 4.97288 5.00957 5.02369 5.13147 5.17777 5.22487 5.32779 5.38175 5.49148 5.55102 5.65217 5.76824 5.90094 6.08305 6.22466 6.56024 6.65981 6.92377 7.48292 8.96708 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.005766 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.925743 B = 4854.506462 C = 6041.999973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.539 5.539 3 C 0.035 3.965 4 C -0.121 4.121 5 C -0.085 4.085 6 H 0.078 0.922 7 C -0.087 4.087 8 C 0.063 3.937 9 N -0.540 5.540 10 C 0.046 3.954 11 C -0.140 4.140 12 C -0.101 4.101 13 C 0.210 3.790 14 H -0.024 1.024 15 C -0.509 4.509 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.039 3.961 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.019 0.981 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 13.016 -10.761 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.093 4.093 4 C -0.158 4.158 5 C -0.104 4.104 6 H 0.096 0.904 7 C -0.125 4.125 8 C -0.065 4.065 9 N -0.264 5.264 10 C -0.082 4.082 11 C -0.178 4.178 12 C -0.140 4.140 13 C 0.103 3.897 14 H -0.007 1.007 15 C -0.548 4.548 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.088 4.088 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.857 12.887 -10.899 16.900 hybrid contribution -0.672 -0.967 0.910 1.488 sum -1.529 11.920 -9.989 15.628 Atomic orbital electron populations 1.22544 0.87249 1.02333 1.01223 1.64725 1.08928 1.15865 1.36814 1.22926 0.96053 0.89134 1.01187 1.22446 0.97983 0.95593 0.99828 1.22009 0.95498 0.96977 0.95965 0.90369 1.21456 1.01546 0.94941 0.94534 1.22117 0.98648 0.97448 0.88330 1.63533 1.20642 1.23501 1.18748 1.22815 0.87727 0.97711 0.99906 1.22820 0.97913 0.97493 0.99597 1.22487 0.95537 0.97995 0.98005 1.19988 0.94395 0.83656 0.91661 1.00684 1.21314 1.03811 0.97328 1.32358 0.93110 1.25705 0.99821 0.95768 0.97486 1.70080 1.36342 1.04013 1.45941 0.85580 0.79920 0.77896 0.78388 1.20265 1.20746 1.19430 1.23292 0.95431 0.99320 0.90804 0.89919 0.91586 0.95448 0.93365 0.89371 0.90808 0.89573 0.92284 0.90840 0.96306 0.93413 0.90697 0.92071 0.92398 0.89901 0.93560 0.94021 0.93052 0.91429 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 127.69 1.20 1.51 16 2 N -0.54 -12.92 5.55 -908.61 -5.04 -17.96 16 3 C 0.03 0.68 6.70 86.45 0.58 1.26 16 4 C -0.12 -2.35 6.51 31.47 0.20 -2.14 16 5 C -0.08 -2.11 3.06 -9.59 -0.03 -2.14 16 6 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 7 C -0.09 -2.49 4.62 30.59 0.14 -2.34 16 8 C 0.06 2.38 4.41 86.30 0.38 2.76 16 9 N -0.54 -23.30 4.80 -864.05 -4.14 -27.44 16 10 C 0.05 1.64 6.21 86.64 0.54 2.17 16 11 C -0.14 -5.19 6.93 31.77 0.22 -4.97 16 12 C -0.10 -4.89 5.89 32.15 0.19 -4.70 16 13 C 0.21 10.94 2.29 44.81 0.10 11.05 16 14 H -0.02 -1.43 7.81 -2.38 -0.02 -1.45 16 15 C -0.51 -29.12 8.83 25.60 0.23 -28.89 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.60 5.34 84.65 0.45 1.05 16 18 N -0.92 -54.54 12.28 21.45 0.26 -54.28 16 19 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.04 1.07 5.32 86.61 0.46 1.53 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 0.56 8.01 -2.38 -0.02 0.54 16 27 H 0.05 0.88 7.73 -2.39 -0.02 0.86 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 32 H 0.07 1.91 7.14 -2.39 -0.02 1.89 16 33 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 34 H 0.05 2.02 7.46 -2.39 -0.02 2.00 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.06 1.88 6.91 -2.39 -0.02 1.87 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.05 2.42 7.59 -2.39 -0.02 2.40 16 40 H 0.04 2.08 8.06 -2.39 -0.02 2.06 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.07 2.03 8.08 -2.38 -0.02 2.01 16 43 H 0.04 1.12 7.81 -2.38 -0.02 1.10 16 Total: -1.00 -62.63 330.69 -1.30 -63.93 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.93 Total: 12.72 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.67 Total: -23.86 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -8.92 Total: -99.69 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.63 -1.30 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds