Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46845 * 110.99522 * 2 1 4 4 C 1.53044 * 109.52064 * 185.83867 * 3 2 1 5 5 C 1.53118 * 109.27776 * 300.82284 * 4 3 2 6 6 C 1.50701 * 109.51972 * 297.68554 * 5 4 3 7 7 H 1.07998 * 120.00549 * 114.56056 * 6 5 4 8 8 C 1.37883 * 119.99977 * 294.56045 * 6 5 4 9 9 N 1.31513 * 120.00071 * 4.87095 * 8 6 5 10 10 Si 1.86796 * 119.99916 * 184.87688 * 8 6 5 11 11 H 1.48500 * 109.47129 * 90.00248 * 10 8 6 12 12 H 1.48506 * 109.46888 * 209.99888 * 10 8 6 13 13 H 1.48501 * 109.47102 * 329.99848 * 10 8 6 14 14 N 1.46901 * 109.52115 * 177.55974 * 5 4 3 15 15 C 1.46843 * 110.99726 * 179.97438 * 14 5 4 16 16 C 1.53039 * 109.52335 * 185.83678 * 15 14 5 17 17 C 1.53113 * 109.27869 * 300.82222 * 16 15 14 18 18 C 1.53123 * 109.15990 * 57.65440 * 17 16 15 19 19 C 1.46841 * 110.99784 * 304.20724 * 14 5 4 20 20 C 1.53115 * 109.16345 * 57.65416 * 5 4 3 21 21 C 1.46846 * 110.99845 * 124.20896 * 2 1 3 22 22 H 1.08997 * 109.47178 * 60.00242 * 1 2 3 23 23 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47319 * 299.99546 * 1 2 3 25 25 H 1.09001 * 109.46295 * 65.82424 * 3 2 1 26 26 H 1.09005 * 109.46416 * 305.85339 * 3 2 1 27 27 H 1.08997 * 109.50162 * 180.87869 * 4 3 2 28 28 H 1.09001 * 109.50027 * 60.76235 * 4 3 2 29 29 H 0.97001 * 120.00272 * 179.97438 * 9 8 6 30 30 H 1.09007 * 109.46519 * 65.82417 * 15 14 5 31 31 H 1.08998 * 109.46586 * 305.85437 * 15 14 5 32 32 H 1.09000 * 109.50669 * 180.88135 * 16 15 14 33 33 H 1.09008 * 109.50078 * 60.76261 * 16 15 14 34 34 H 1.09003 * 109.52494 * 177.55313 * 17 16 15 35 35 H 1.08997 * 109.52630 * 297.75176 * 17 16 15 36 36 H 1.09001 * 109.50757 * 62.28528 * 18 17 16 37 37 H 1.09005 * 109.50310 * 182.40367 * 18 17 16 38 38 H 1.08999 * 109.46457 * 294.17620 * 19 14 5 39 39 H 1.08999 * 109.46553 * 54.14656 * 19 14 5 40 40 H 1.08993 * 109.50748 * 62.28083 * 20 5 4 41 41 H 1.08995 * 109.50435 * 182.40705 * 20 5 4 42 42 H 1.09005 * 109.46034 * 294.17583 * 21 2 1 43 43 H 1.08999 * 109.46554 * 54.14385 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 3.8019 1.2271 2.3161 7 1 3.1599 0.7468 3.0396 8 6 4.3317 2.4717 2.5835 9 7 5.0345 3.0983 1.6653 10 14 4.0513 3.2677 4.2499 11 1 5.1453 2.8775 5.1752 12 1 4.0359 4.7448 4.0965 13 1 2.7499 2.8138 4.8026 14 7 5.5756 0.4487 0.8474 15 6 6.1861 -0.3105 1.9462 16 6 7.7103 -0.2585 1.8187 17 6 8.1254 -0.8531 0.4702 18 6 7.4379 -0.0749 -0.6551 19 6 5.9216 -0.1318 -0.4562 20 6 3.5182 -0.8714 1.0208 21 6 1.9953 -0.7708 1.1338 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.7324 1.8608 0.9376 26 1 1.5633 1.9257 -0.8330 27 1 3.9098 2.3513 -0.1310 28 1 3.7813 0.8568 -1.0906 29 1 5.4069 3.9740 1.8532 30 1 5.8530 -1.3474 1.9002 31 1 5.8863 0.1252 2.8992 32 1 8.1628 -0.8351 2.6255 33 1 8.0454 0.7771 1.8785 34 1 9.2069 -0.7786 0.3566 35 1 7.8247 -1.8999 0.4256 36 1 7.7687 0.9635 -0.6344 37 1 7.6959 -0.5205 -1.6160 38 1 5.5897 -1.1694 -0.4914 39 1 5.4298 0.4337 -1.2477 40 1 3.7813 -1.3835 0.0954 41 1 3.9100 -1.4301 1.8707 42 1 1.7325 -0.2708 2.0660 43 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260018292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = 9.447659 kcal Electronic energy + Delta-G solvation = -20938.237449 eV Core-core repulsion = 18211.032826 eV Total energy + Delta-G solvation = -2727.204623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08915 -36.96180 -33.99978 -31.74196 -30.23393 -29.80608 -29.42283 -26.06546 -24.48996 -23.04761 -22.56680 -21.48157 -20.65785 -19.08749 -18.03058 -15.85143 -15.41525 -14.68304 -14.29435 -14.19331 -13.87819 -13.60969 -13.41476 -13.08104 -12.90118 -12.53587 -12.38475 -11.91823 -11.67180 -11.47989 -11.42652 -10.98576 -10.84860 -10.75249 -10.57935 -10.31622 -10.24531 -10.05177 -9.92026 -9.87513 -9.47032 -9.19131 -9.06741 -8.70640 -8.22896 -7.51497 -6.59239 -5.80909 -3.94651 3.31990 3.39822 3.42471 4.48328 4.75783 5.12717 5.48014 5.57789 5.61791 5.65687 5.70358 5.88280 5.91620 6.08544 6.11136 6.21664 6.24413 6.28184 6.31971 6.37779 6.45711 6.49183 6.55041 6.57862 6.64920 6.69723 6.75701 6.88112 6.94082 6.96467 6.98646 7.17650 7.21183 7.24556 7.46857 7.71820 7.89571 7.92660 8.08219 8.36193 8.68423 8.84616 9.17372 9.70379 11.18048 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.011821 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.370538 B = 2368.121670 C = 3514.676181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.070 3.930 4 C -0.094 4.094 5 C 0.247 3.753 6 C -0.522 4.522 7 H 0.051 0.949 8 C 0.090 3.910 9 N -0.838 5.838 10 Si 0.869 3.131 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.486 5.486 15 C 0.073 3.927 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.113 4.113 19 C 0.050 3.950 20 C -0.138 4.138 21 C 0.072 3.928 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.018 0.982 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.027 0.973 29 H 0.254 0.746 30 H 0.005 0.995 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.010 0.990 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -5.381 -2.784 6.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.058 4.058 4 C -0.133 4.133 5 C 0.160 3.840 6 C -0.560 4.560 7 H 0.069 0.931 8 C -0.116 4.116 9 N -0.472 5.472 10 Si 0.697 3.303 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.204 1.204 14 N -0.208 5.208 15 C -0.056 4.056 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.079 4.079 20 C -0.177 4.177 21 C -0.056 4.056 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.014 -4.933 -3.252 5.909 hybrid contribution -0.735 -0.026 1.716 1.867 sum -0.721 -4.960 -1.536 5.242 Atomic orbital electron populations 1.22271 0.89382 1.00633 0.99833 1.62050 1.05795 1.15645 1.43616 1.22021 0.97249 0.87120 0.99394 1.21615 0.91828 1.03769 0.96050 1.18595 0.82470 0.88219 0.94746 1.20794 1.31136 1.02118 1.01998 0.93128 1.24828 0.94651 0.96769 0.95366 1.70000 1.32578 1.12962 1.31705 0.86995 0.78381 0.78733 0.86147 1.20820 1.21463 1.20382 1.62204 1.11958 1.48502 0.98141 1.21775 0.92092 0.94023 0.97666 1.21593 0.97417 1.00900 0.95424 1.21528 0.98660 0.98752 0.96311 1.21551 0.96479 1.00586 0.96452 1.22104 0.94323 0.96116 0.95309 1.22261 0.94486 1.01754 0.99219 1.21887 0.96108 0.95667 0.91972 0.92283 0.92576 0.96334 0.93768 0.93464 0.88470 0.95410 0.93597 0.97695 0.90075 0.93485 0.91484 0.93363 0.93333 0.91446 0.93465 0.97216 0.91360 0.93807 0.93115 0.94205 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.59 60.07 0.58 1.02 16 2 N -0.55 -10.55 4.91 -242.94 -1.19 -11.74 16 3 C 0.07 1.46 5.26 -3.83 -0.02 1.44 16 4 C -0.09 -2.14 4.46 -26.65 -0.12 -2.26 16 5 C 0.25 5.66 0.07 -132.63 -0.01 5.65 16 6 C -0.52 -13.14 4.85 -34.44 -0.17 -13.31 16 7 H 0.05 1.32 6.69 -52.49 -0.35 0.97 16 8 C 0.09 2.33 5.21 -17.82 -0.09 2.24 16 9 N -0.84 -22.29 10.90 55.43 0.60 -21.68 16 10 Si 0.87 20.44 29.54 -169.99 -5.02 15.41 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.49 -10.84 3.59 -220.22 -0.79 -11.63 16 15 C 0.07 1.54 4.71 -3.83 -0.02 1.52 16 16 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 17 C -0.11 -1.89 6.00 -26.61 -0.16 -2.05 16 18 C -0.11 -1.98 6.09 -26.65 -0.16 -2.14 16 19 C 0.05 1.00 4.68 -3.84 -0.02 0.98 16 20 C -0.14 -2.90 4.14 -26.65 -0.11 -3.01 16 21 C 0.07 1.42 5.25 -3.83 -0.02 1.40 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 26 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.10 2.48 6.29 -51.93 -0.33 2.16 16 28 H 0.03 0.62 6.09 -51.93 -0.32 0.30 16 29 H 0.25 6.62 8.31 -40.82 -0.34 6.29 16 30 H 0.01 0.10 6.70 -51.93 -0.35 -0.24 16 31 H 0.08 1.91 6.86 -51.93 -0.36 1.55 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.01 0.20 6.65 -51.93 -0.35 -0.15 16 39 H 0.07 1.41 5.86 -51.93 -0.30 1.11 16 40 H 0.04 0.92 6.52 -51.93 -0.34 0.58 16 41 H 0.05 1.07 6.69 -51.93 -0.35 0.73 16 42 H 0.04 0.85 6.69 -51.93 -0.35 0.50 16 43 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -25.90 306.76 -9.80 -35.70 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.54 Total: 0.10 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.48 Total: -10.79 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -1.38 Total: -45.05 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.90 -9.80 -35.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.152 kcal (2) G-P(sol) polarization free energy of solvation -25.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds