Wall clock time and date at job start Mon Mar 30 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46845 * 110.99522 * 2 1 4 4 C 1.53044 * 109.52064 * 185.83867 * 3 2 1 5 5 C 1.53118 * 109.27776 * 300.82284 * 4 3 2 6 6 C 1.50701 * 109.51972 * 297.68554 * 5 4 3 7 7 H 1.07998 * 120.00549 * 114.56056 * 6 5 4 8 8 C 1.37883 * 119.99977 * 294.56045 * 6 5 4 9 9 N 1.31513 * 120.00071 * 4.87095 * 8 6 5 10 10 Si 1.86796 * 119.99916 * 184.87688 * 8 6 5 11 11 H 1.48500 * 109.47129 * 90.00248 * 10 8 6 12 12 H 1.48506 * 109.46888 * 209.99888 * 10 8 6 13 13 H 1.48501 * 109.47102 * 329.99848 * 10 8 6 14 14 N 1.46901 * 109.52115 * 177.55974 * 5 4 3 15 15 C 1.46843 * 110.99726 * 179.97438 * 14 5 4 16 16 C 1.53039 * 109.52335 * 185.83678 * 15 14 5 17 17 C 1.53113 * 109.27869 * 300.82222 * 16 15 14 18 18 C 1.53123 * 109.15990 * 57.65440 * 17 16 15 19 19 C 1.46841 * 110.99784 * 304.20724 * 14 5 4 20 20 C 1.53115 * 109.16345 * 57.65416 * 5 4 3 21 21 C 1.46846 * 110.99845 * 124.20896 * 2 1 3 22 22 H 1.08997 * 109.47178 * 60.00242 * 1 2 3 23 23 H 1.09005 * 109.46933 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47319 * 299.99546 * 1 2 3 25 25 H 1.09001 * 109.46295 * 65.82424 * 3 2 1 26 26 H 1.09005 * 109.46416 * 305.85339 * 3 2 1 27 27 H 1.08997 * 109.50162 * 180.87869 * 4 3 2 28 28 H 1.09001 * 109.50027 * 60.76235 * 4 3 2 29 29 H 0.97001 * 120.00272 * 179.97438 * 9 8 6 30 30 H 1.09007 * 109.46519 * 65.82417 * 15 14 5 31 31 H 1.08998 * 109.46586 * 305.85437 * 15 14 5 32 32 H 1.09000 * 109.50669 * 180.88135 * 16 15 14 33 33 H 1.09008 * 109.50078 * 60.76261 * 16 15 14 34 34 H 1.09003 * 109.52494 * 177.55313 * 17 16 15 35 35 H 1.08997 * 109.52630 * 297.75176 * 17 16 15 36 36 H 1.09001 * 109.50757 * 62.28528 * 18 17 16 37 37 H 1.09005 * 109.50310 * 182.40367 * 18 17 16 38 38 H 1.08999 * 109.46457 * 294.17620 * 19 14 5 39 39 H 1.08999 * 109.46553 * 54.14656 * 19 14 5 40 40 H 1.08993 * 109.50748 * 62.28083 * 20 5 4 41 41 H 1.08995 * 109.50435 * 182.40705 * 20 5 4 42 42 H 1.09005 * 109.46034 * 294.17583 * 21 2 1 43 43 H 1.08999 * 109.46554 * 54.14385 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 3.8019 1.2271 2.3161 7 1 3.1599 0.7468 3.0396 8 6 4.3317 2.4717 2.5835 9 7 5.0345 3.0983 1.6653 10 14 4.0513 3.2677 4.2499 11 1 5.1453 2.8775 5.1752 12 1 4.0359 4.7448 4.0965 13 1 2.7499 2.8138 4.8026 14 7 5.5756 0.4487 0.8474 15 6 6.1861 -0.3105 1.9462 16 6 7.7103 -0.2585 1.8187 17 6 8.1254 -0.8531 0.4702 18 6 7.4379 -0.0749 -0.6551 19 6 5.9216 -0.1318 -0.4562 20 6 3.5182 -0.8714 1.0208 21 6 1.9953 -0.7708 1.1338 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.7324 1.8608 0.9376 26 1 1.5633 1.9257 -0.8330 27 1 3.9098 2.3513 -0.1310 28 1 3.7813 0.8568 -1.0906 29 1 5.4069 3.9740 1.8532 30 1 5.8530 -1.3474 1.9002 31 1 5.8863 0.1252 2.8992 32 1 8.1628 -0.8351 2.6255 33 1 8.0454 0.7771 1.8785 34 1 9.2069 -0.7786 0.3566 35 1 7.8247 -1.8999 0.4256 36 1 7.7687 0.9635 -0.6344 37 1 7.6959 -0.5205 -1.6160 38 1 5.5897 -1.1694 -0.4914 39 1 5.4298 0.4337 -1.2477 40 1 3.7813 -1.3835 0.0954 41 1 3.9100 -1.4301 1.8707 42 1 1.7325 -0.2708 2.0660 43 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:18 Heat of formation + Delta-G solvation = -5.861645 kcal Electronic energy + Delta-G solvation = -20938.901310 eV Core-core repulsion = 18211.032826 eV Total energy + Delta-G solvation = -2727.868484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76994 -38.50653 -35.63466 -33.62373 -31.86241 -31.36785 -31.07043 -27.79435 -26.18053 -24.59881 -24.21015 -23.09863 -22.27451 -20.70770 -19.77054 -17.65009 -17.09184 -16.57127 -15.92213 -15.76697 -15.45256 -15.20186 -14.92234 -14.77512 -14.51385 -14.09598 -13.96075 -13.51918 -13.33872 -13.03448 -12.94807 -12.81103 -12.61040 -12.42087 -12.26482 -12.01514 -11.93207 -11.68595 -11.54894 -11.46143 -11.08455 -10.95252 -10.70986 -10.56769 -10.17147 -9.10149 -8.31086 -7.78761 -5.96921 1.39996 1.45245 1.49218 2.51531 3.23045 3.31474 3.70876 4.14045 4.17745 4.21214 4.31731 4.32669 4.43723 4.54832 4.61065 4.68004 4.74625 4.75743 4.81959 4.87331 4.89038 5.00807 5.01849 5.04802 5.07915 5.15283 5.22241 5.27588 5.29520 5.32165 5.39811 5.45891 5.55221 5.65903 5.69024 5.82043 6.04449 6.32588 6.37585 6.49952 6.80388 7.09769 7.32923 7.69466 9.16593 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.011821 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.370538 B = 2368.121670 C = 3514.676181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.078 3.922 4 C -0.087 4.087 5 C 0.243 3.757 6 C -0.520 4.520 7 H 0.036 0.964 8 C 0.057 3.943 9 N -0.858 5.858 10 Si 0.915 3.085 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.280 1.280 14 N -0.506 5.506 15 C 0.076 3.924 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.109 4.109 19 C 0.053 3.947 20 C -0.130 4.130 21 C 0.075 3.925 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.015 0.985 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.249 0.751 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.013 0.987 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -6.909 -3.499 7.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.051 4.051 4 C -0.126 4.126 5 C 0.155 3.845 6 C -0.559 4.559 7 H 0.054 0.946 8 C -0.148 4.148 9 N -0.493 5.493 10 Si 0.743 3.257 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.205 1.205 14 N -0.228 5.228 15 C -0.052 4.052 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.076 4.076 20 C -0.170 4.170 21 C -0.053 4.053 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.014 -6.469 -3.961 7.585 hybrid contribution -0.783 0.426 1.933 2.128 sum -0.769 -6.043 -2.028 6.421 Atomic orbital electron populations 1.22379 0.86891 1.02359 1.00492 1.62049 1.08062 1.14153 1.43099 1.21854 0.96230 0.88345 0.98624 1.21463 0.93109 1.01817 0.96177 1.18565 0.83336 0.89078 0.93560 1.20910 1.30298 1.02107 1.02608 0.94622 1.25251 0.94890 0.97326 0.97311 1.70116 1.33618 1.12951 1.32629 0.86283 0.77900 0.77875 0.83667 1.20990 1.21557 1.20544 1.62091 1.11605 1.49643 0.99492 1.21701 0.94055 0.93597 0.95847 1.21548 0.95278 1.00270 0.97824 1.21489 1.00067 0.98826 0.94163 1.21524 0.94513 1.00119 0.98491 1.22097 0.96176 0.95710 0.93591 1.22133 0.95469 1.00381 0.98980 1.21846 0.95349 0.96856 0.91268 0.90628 0.90340 0.96643 0.96438 0.91871 0.91619 0.95105 0.94094 0.97260 0.93313 0.91314 0.93626 0.90828 0.92115 0.93197 0.90643 0.96859 0.92599 0.93537 0.93665 0.96264 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.59 127.69 1.22 2.01 16 2 N -0.55 -20.31 4.91 -922.53 -4.53 -24.84 16 3 C 0.08 3.24 5.26 86.33 0.45 3.69 16 4 C -0.09 -4.00 4.46 30.65 0.14 -3.87 16 5 C 0.24 11.21 0.07 2.86 0.00 11.21 16 6 C -0.52 -26.81 4.85 25.60 0.12 -26.69 16 7 H 0.04 1.91 6.69 -2.91 -0.02 1.89 16 8 C 0.06 2.98 5.21 84.66 0.44 3.42 16 9 N -0.86 -46.83 10.90 21.45 0.23 -46.60 16 10 Si 0.91 42.88 29.54 68.60 2.03 44.91 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 N -0.51 -22.69 3.59 -850.64 -3.06 -25.74 16 15 C 0.08 3.22 4.71 86.33 0.41 3.63 16 16 C -0.11 -3.95 6.09 30.65 0.19 -3.76 16 17 C -0.11 -3.24 6.00 30.67 0.18 -3.06 16 18 C -0.11 -3.59 6.09 30.65 0.19 -3.41 16 19 C 0.05 2.05 4.68 86.33 0.40 2.46 16 20 C -0.13 -5.39 4.14 30.65 0.13 -5.26 16 21 C 0.08 2.88 5.25 86.33 0.45 3.34 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.08 1.96 8.09 -2.38 -0.02 1.94 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.02 0.81 7.31 -2.39 -0.02 0.80 16 26 H 0.06 2.39 8.12 -2.38 -0.02 2.37 16 27 H 0.07 3.45 6.29 -2.39 -0.02 3.43 16 28 H 0.03 1.37 6.09 -2.39 -0.01 1.35 16 29 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.01 0.38 6.70 -2.38 -0.02 0.37 16 31 H 0.05 2.34 6.86 -2.39 -0.02 2.32 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.01 0.51 6.65 -2.39 -0.02 0.50 16 39 H 0.06 2.30 5.86 -2.39 -0.01 2.28 16 40 H 0.05 1.89 6.52 -2.39 -0.02 1.87 16 41 H 0.04 1.89 6.69 -2.39 -0.02 1.88 16 42 H 0.02 0.81 6.69 -2.38 -0.02 0.80 16 43 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 Total: -1.00 -55.87 306.76 -0.04 -55.91 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.96 Total: 12.66 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.33 Total: -16.29 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -7.35 Total: -97.19 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -55.87 -0.04 -55.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.053 kcal (2) G-P(sol) polarization free energy of solvation -55.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds