Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47434 * 110.99791 * 2 1 4 4 C 1.54319 * 107.23688 * 123.25856 * 3 2 1 5 5 C 1.55135 * 103.01703 * 22.27736 * 4 3 2 6 6 C 1.47846 * 110.99624 * 120.83729 * 2 1 3 7 7 H 1.08995 * 110.37688 * 332.58078 * 6 2 1 8 8 C 1.53004 * 110.37313 * 94.80894 * 6 2 1 9 9 C 1.53005 * 109.47069 * 294.79612 * 8 6 2 10 10 N 1.46898 * 109.46754 * 185.67487 * 9 8 6 11 11 C 1.47439 * 111.00245 * 69.87392 * 10 9 8 12 12 C 1.54324 * 107.23770 * 123.25445 * 11 10 9 13 13 C 1.55142 * 103.01331 * 22.28361 * 12 11 10 14 14 H 1.08997 * 110.99117 * 82.47687 * 13 12 11 15 15 C 1.50701 * 110.98926 * 206.25395 * 13 12 11 16 16 H 1.08006 * 120.00181 * 118.54374 * 15 13 12 17 17 C 1.37878 * 120.00139 * 298.55312 * 15 13 12 18 18 N 1.31515 * 120.00111 * 179.97438 * 17 15 13 19 19 Si 1.86794 * 120.00044 * 359.97438 * 17 15 13 20 20 H 1.48503 * 109.47376 * 90.00236 * 19 17 15 21 21 H 1.48501 * 109.47367 * 210.00302 * 19 17 15 22 22 H 1.48509 * 109.47240 * 330.00668 * 19 17 15 23 23 C 1.47849 * 110.99687 * 190.71375 * 10 9 8 24 24 H 1.08995 * 109.47661 * 305.39950 * 1 2 3 25 25 H 1.08999 * 109.46904 * 65.40275 * 1 2 3 26 26 H 1.09001 * 109.47338 * 185.39498 * 1 2 3 27 27 H 1.09007 * 109.88720 * 242.65983 * 3 2 1 28 28 H 1.09000 * 109.89332 * 3.84494 * 3 2 1 29 29 H 1.08990 * 110.71143 * 140.66515 * 4 3 2 30 30 H 1.09009 * 110.70254 * 263.89689 * 4 3 2 31 31 H 1.09002 * 110.98984 * 206.25839 * 5 4 3 32 32 H 1.08995 * 110.99212 * 82.44491 * 5 4 3 33 33 H 1.09001 * 109.47332 * 174.79236 * 8 6 2 34 34 H 1.09008 * 109.47021 * 54.79279 * 8 6 2 35 35 H 1.09000 * 109.46720 * 305.67601 * 9 8 6 36 36 H 1.08998 * 109.47087 * 65.67332 * 9 8 6 37 37 H 1.08999 * 109.89097 * 242.65941 * 11 10 9 38 38 H 1.09001 * 109.88792 * 3.85052 * 11 10 9 39 39 H 1.09000 * 110.70697 * 140.66395 * 12 11 10 40 40 H 1.08995 * 110.70257 * 263.73142 * 12 11 10 41 41 H 0.97001 * 119.99982 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.37449 * 332.46785 * 23 10 9 43 43 H 1.09000 * 110.37104 * 94.80677 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3764 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3046 0.0445 1.5439 6 6 1.9988 -0.7075 1.1852 7 1 1.2880 -0.6518 2.0096 8 6 2.3019 -2.1676 0.8425 9 6 0.9979 -2.8937 0.5058 10 7 1.2704 -4.3238 0.3097 11 6 1.6209 -4.9748 1.5854 12 6 0.6266 -6.1364 1.7944 13 6 0.1288 -6.4333 0.3553 14 1 0.8315 -7.0748 -0.1764 15 6 -1.2479 -7.0461 0.3760 16 1 -2.0724 -6.5380 -0.1020 17 6 -1.4548 -8.2553 1.0053 18 7 -2.6563 -8.7898 1.0238 19 14 -0.0288 -9.1343 1.8316 20 1 0.0692 -8.6966 3.2473 21 1 -0.2554 -10.6011 1.7816 22 1 1.2339 -8.8040 1.1230 23 6 0.0949 -5.0135 -0.2633 24 1 -0.3634 0.5953 0.8376 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3634 -1.0231 0.0966 27 1 2.5697 1.5539 -0.9106 28 1 1.1755 2.0891 0.0687 29 1 3.7999 2.1034 0.9905 30 1 2.3743 1.9548 2.0694 31 1 3.5493 -0.0794 2.5988 32 1 4.1301 -0.2832 0.9121 33 1 2.7765 -2.6503 1.6968 34 1 2.9722 -2.2077 -0.0162 35 1 0.2899 -2.7677 1.3250 36 1 0.5747 -2.4759 -0.4076 37 1 2.6386 -5.3621 1.5368 38 1 1.5326 -4.2595 2.4032 39 1 1.1324 -7.0058 2.2143 40 1 -0.1993 -5.8262 2.4344 41 1 -2.8018 -9.6407 1.4662 42 1 -0.8228 -4.4980 0.0198 43 1 0.1799 -5.0702 -1.3485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = 4.661427 kcal Electronic energy + Delta-G solvation = -19248.166073 eV Core-core repulsion = 16520.753904 eV Total energy + Delta-G solvation = -2727.412169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.50255 -38.13855 -33.81421 -32.24902 -32.18834 -30.12511 -28.42694 -26.85985 -25.76119 -23.98347 -22.40842 -21.26135 -20.20631 -19.78066 -19.38265 -16.77405 -16.53058 -15.78192 -15.27575 -14.90539 -14.27053 -14.06138 -13.75265 -13.48273 -13.06728 -12.97774 -12.74169 -12.63059 -12.55529 -11.96872 -11.61281 -11.45589 -11.36781 -11.29019 -11.22977 -10.90234 -10.74435 -10.71462 -10.35787 -10.26088 -9.81452 -9.76171 -9.45098 -9.02163 -8.54448 -8.43048 -7.69216 -6.07188 -4.06448 3.29427 3.38991 3.42075 3.84623 4.34549 4.43091 4.49335 4.66244 4.76407 5.09621 5.18346 5.24804 5.27218 5.32494 5.38519 5.45332 5.50861 5.57336 5.63810 5.67659 5.72796 5.79198 5.83920 5.93265 5.99518 6.00928 6.03439 6.27548 6.31827 6.37401 6.45570 6.58990 6.78736 6.86778 6.89798 6.98711 7.03702 7.50416 7.54189 7.73109 7.84642 8.52539 8.95742 9.55787 11.06021 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045125 B = 0.004336 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.350315 B = 6456.730005 C = 6841.425935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.041 3.959 4 C -0.143 4.143 5 C -0.124 4.124 6 C 0.071 3.929 7 H 0.052 0.948 8 C -0.096 4.096 9 C 0.054 3.946 10 N -0.535 5.535 11 C 0.044 3.956 12 C -0.150 4.150 13 C 0.011 3.989 14 H 0.039 0.961 15 C -0.510 4.510 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.264 1.264 23 C 0.058 3.942 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 18.921 1.525 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.251 5.251 3 C -0.086 4.086 4 C -0.181 4.181 5 C -0.162 4.162 6 C -0.037 4.037 7 H 0.070 0.930 8 C -0.135 4.135 9 C -0.075 4.075 10 N -0.259 5.259 11 C -0.083 4.083 12 C -0.189 4.189 13 C -0.008 4.008 14 H 0.057 0.943 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.541 5.541 19 Si 0.712 3.288 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.188 1.188 23 C -0.068 4.068 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.235 18.483 0.778 21.644 hybrid contribution -0.427 -0.023 1.895 1.943 sum 10.808 18.460 2.673 21.558 Atomic orbital electron populations 1.22718 0.87641 1.02708 1.00521 1.63483 1.07892 1.13405 1.40334 1.22831 0.97806 0.89652 0.98356 1.22777 0.99884 0.97391 0.98096 1.22734 0.97753 0.94236 1.01518 1.22662 0.95334 0.94822 0.90911 0.92968 1.21515 0.98235 0.91837 1.01864 1.22326 0.95925 0.89151 1.00069 1.63602 1.36711 1.01622 1.23960 1.22789 0.99327 0.96028 0.90198 1.23209 0.97756 0.96585 1.01316 1.20251 0.97418 0.92513 0.90622 0.94255 1.20936 0.93136 1.05086 1.35699 0.90838 1.24980 0.95377 0.96911 0.95739 1.69904 1.21114 1.18796 1.44239 0.86880 0.83600 0.78184 0.80156 1.20508 1.22165 1.18844 1.22967 0.89779 0.95339 0.98761 0.95820 0.91435 0.90412 0.90583 0.92959 0.90835 0.91752 0.90974 0.90358 0.91853 0.90614 0.95802 0.90495 0.91799 0.93999 0.92979 0.91631 0.92678 0.94070 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.78 60.07 0.53 0.66 16 2 N -0.53 -5.95 4.94 -231.60 -1.14 -7.09 16 3 C 0.04 0.38 6.89 -2.84 -0.02 0.36 16 4 C -0.14 -1.16 6.94 -24.91 -0.17 -1.33 16 5 C -0.12 -1.14 6.49 -24.60 -0.16 -1.30 16 6 C 0.07 0.80 2.59 -66.19 -0.17 0.63 16 7 H 0.05 0.61 7.81 -51.93 -0.41 0.20 16 8 C -0.10 -1.25 5.04 -26.73 -0.13 -1.38 16 9 C 0.05 0.83 3.18 -3.82 -0.01 0.81 16 10 N -0.53 -9.84 5.16 -231.25 -1.19 -11.03 16 11 C 0.04 0.81 6.12 -2.83 -0.02 0.80 16 12 C -0.15 -3.27 5.09 -24.90 -0.13 -3.40 16 13 C 0.01 0.27 2.41 -89.63 -0.22 0.06 16 14 H 0.04 0.98 7.41 -51.93 -0.39 0.59 16 15 C -0.51 -14.44 9.13 -34.44 -0.31 -14.75 16 16 H 0.07 2.24 8.03 -52.48 -0.42 1.82 16 17 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 18 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 19 Si 0.88 22.02 24.52 -169.99 -4.17 17.85 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.26 -6.35 6.48 56.52 0.37 -5.98 16 23 C 0.06 1.22 6.12 -2.30 -0.01 1.21 16 24 H 0.02 0.24 8.09 -51.93 -0.42 -0.18 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.92 5.28 -51.93 -0.27 0.65 16 27 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.44 7.55 -51.93 -0.39 0.05 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.06 0.81 7.03 -51.93 -0.37 0.45 16 34 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 35 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 36 H 0.08 1.19 6.34 -51.93 -0.33 0.86 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.69 6.95 -51.93 -0.36 0.33 16 39 H 0.05 1.14 5.12 -51.93 -0.27 0.87 16 40 H 0.06 1.48 8.04 -51.93 -0.42 1.06 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -29.91 318.25 -9.68 -39.59 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.82 Total: -1.46 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.93 Total: -15.67 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -1.56 Total: -45.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.17 Total: 17.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.91 -9.68 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.248 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds