Wall clock time and date at job start Mon Mar 30 2020 03:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47434 * 110.99791 * 2 1 4 4 C 1.54319 * 107.23688 * 123.25856 * 3 2 1 5 5 C 1.55135 * 103.01703 * 22.27736 * 4 3 2 6 6 C 1.47846 * 110.99624 * 120.83729 * 2 1 3 7 7 H 1.08995 * 110.37688 * 332.58078 * 6 2 1 8 8 C 1.53004 * 110.37313 * 94.80894 * 6 2 1 9 9 C 1.53005 * 109.47069 * 294.79612 * 8 6 2 10 10 N 1.46898 * 109.46754 * 185.67487 * 9 8 6 11 11 C 1.47439 * 111.00245 * 69.87392 * 10 9 8 12 12 C 1.54324 * 107.23770 * 123.25445 * 11 10 9 13 13 C 1.55142 * 103.01331 * 22.28361 * 12 11 10 14 14 H 1.08997 * 110.99117 * 82.47687 * 13 12 11 15 15 C 1.50701 * 110.98926 * 206.25395 * 13 12 11 16 16 H 1.08006 * 120.00181 * 118.54374 * 15 13 12 17 17 C 1.37878 * 120.00139 * 298.55312 * 15 13 12 18 18 N 1.31515 * 120.00111 * 179.97438 * 17 15 13 19 19 Si 1.86794 * 120.00044 * 359.97438 * 17 15 13 20 20 H 1.48503 * 109.47376 * 90.00236 * 19 17 15 21 21 H 1.48501 * 109.47367 * 210.00302 * 19 17 15 22 22 H 1.48509 * 109.47240 * 330.00668 * 19 17 15 23 23 C 1.47849 * 110.99687 * 190.71375 * 10 9 8 24 24 H 1.08995 * 109.47661 * 305.39950 * 1 2 3 25 25 H 1.08999 * 109.46904 * 65.40275 * 1 2 3 26 26 H 1.09001 * 109.47338 * 185.39498 * 1 2 3 27 27 H 1.09007 * 109.88720 * 242.65983 * 3 2 1 28 28 H 1.09000 * 109.89332 * 3.84494 * 3 2 1 29 29 H 1.08990 * 110.71143 * 140.66515 * 4 3 2 30 30 H 1.09009 * 110.70254 * 263.89689 * 4 3 2 31 31 H 1.09002 * 110.98984 * 206.25839 * 5 4 3 32 32 H 1.08995 * 110.99212 * 82.44491 * 5 4 3 33 33 H 1.09001 * 109.47332 * 174.79236 * 8 6 2 34 34 H 1.09008 * 109.47021 * 54.79279 * 8 6 2 35 35 H 1.09000 * 109.46720 * 305.67601 * 9 8 6 36 36 H 1.08998 * 109.47087 * 65.67332 * 9 8 6 37 37 H 1.08999 * 109.89097 * 242.65941 * 11 10 9 38 38 H 1.09001 * 109.88792 * 3.85052 * 11 10 9 39 39 H 1.09000 * 110.70697 * 140.66395 * 12 11 10 40 40 H 1.08995 * 110.70257 * 263.73142 * 12 11 10 41 41 H 0.97001 * 119.99982 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.37449 * 332.46785 * 23 10 9 43 43 H 1.09000 * 110.37104 * 94.80677 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3764 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3046 0.0445 1.5439 6 6 1.9988 -0.7075 1.1852 7 1 1.2880 -0.6518 2.0096 8 6 2.3019 -2.1676 0.8425 9 6 0.9979 -2.8937 0.5058 10 7 1.2704 -4.3238 0.3097 11 6 1.6209 -4.9748 1.5854 12 6 0.6266 -6.1364 1.7944 13 6 0.1288 -6.4333 0.3553 14 1 0.8315 -7.0748 -0.1764 15 6 -1.2479 -7.0461 0.3760 16 1 -2.0724 -6.5380 -0.1020 17 6 -1.4548 -8.2553 1.0053 18 7 -2.6563 -8.7898 1.0238 19 14 -0.0288 -9.1343 1.8316 20 1 0.0692 -8.6966 3.2473 21 1 -0.2554 -10.6011 1.7816 22 1 1.2339 -8.8040 1.1230 23 6 0.0949 -5.0135 -0.2633 24 1 -0.3634 0.5953 0.8376 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3634 -1.0231 0.0966 27 1 2.5697 1.5539 -0.9106 28 1 1.1755 2.0891 0.0687 29 1 3.7999 2.1034 0.9905 30 1 2.3743 1.9548 2.0694 31 1 3.5493 -0.0794 2.5988 32 1 4.1301 -0.2832 0.9121 33 1 2.7765 -2.6503 1.6968 34 1 2.9722 -2.2077 -0.0162 35 1 0.2899 -2.7677 1.3250 36 1 0.5747 -2.4759 -0.4076 37 1 2.6386 -5.3621 1.5368 38 1 1.5326 -4.2595 2.4032 39 1 1.1324 -7.0058 2.2143 40 1 -0.1993 -5.8262 2.4344 41 1 -2.8018 -9.6407 1.4662 42 1 -0.8228 -4.4980 0.0198 43 1 0.1799 -5.0702 -1.3485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:13 Heat of formation + Delta-G solvation = -16.186433 kcal Electronic energy + Delta-G solvation = -19249.070104 eV Core-core repulsion = 16520.753904 eV Total energy + Delta-G solvation = -2728.316200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47311 -39.56412 -35.47123 -33.96054 -33.00541 -31.55780 -30.11852 -28.05637 -26.63052 -25.79744 -23.67820 -22.01435 -21.54037 -21.33489 -20.70758 -18.81277 -17.44898 -17.11033 -16.63397 -16.38682 -15.49730 -15.25903 -15.09731 -14.75685 -14.60295 -14.26519 -14.08162 -13.92036 -13.55252 -13.32309 -13.02270 -12.81318 -12.67833 -12.56707 -12.33620 -12.10689 -12.01743 -11.88277 -11.58712 -11.56988 -11.43178 -11.39738 -11.22838 -11.09141 -10.73918 -9.25178 -9.19581 -8.31975 -6.36527 1.31329 1.36026 1.46905 2.32863 3.02183 3.04690 3.11971 3.72054 3.77195 3.95978 4.00017 4.09290 4.19651 4.29085 4.37752 4.43413 4.46932 4.51165 4.53020 4.61044 4.66139 4.75221 4.77381 4.84957 4.94006 4.98483 5.01276 5.01719 5.03374 5.11655 5.14255 5.21685 5.32248 5.36177 5.43561 5.56065 5.65390 6.04054 6.10051 6.16358 6.25996 6.33777 6.69044 7.29510 8.84829 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045125 B = 0.004336 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.350315 B = 6456.730005 C = 6841.425935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.543 5.543 3 C 0.038 3.962 4 C -0.137 4.137 5 C -0.121 4.121 6 C 0.071 3.929 7 H 0.048 0.952 8 C -0.086 4.086 9 C 0.057 3.943 10 N -0.535 5.535 11 C 0.051 3.949 12 C -0.148 4.148 13 C 0.005 3.995 14 H 0.035 0.965 15 C -0.518 4.518 16 H 0.032 0.968 17 C 0.014 3.986 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.264 1.264 21 H -0.294 1.294 22 H -0.246 1.246 23 C 0.067 3.933 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.028 0.972 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 20.260 2.604 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.268 5.268 3 C -0.089 4.089 4 C -0.175 4.175 5 C -0.159 4.159 6 C -0.038 4.038 7 H 0.066 0.934 8 C -0.124 4.124 9 C -0.071 4.071 10 N -0.259 5.259 11 C -0.077 4.077 12 C -0.187 4.187 13 C -0.015 4.015 14 H 0.053 0.947 15 C -0.556 4.556 16 H 0.050 0.950 17 C -0.183 4.183 18 N -0.590 5.590 19 Si 0.772 3.228 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.170 1.170 23 C -0.060 4.060 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.969 19.855 1.852 24.348 hybrid contribution -1.377 -0.383 1.475 2.054 sum 12.593 19.472 3.327 23.426 Atomic orbital electron populations 1.22667 0.87760 1.01834 1.01106 1.63455 1.07961 1.14834 1.40542 1.22893 0.98282 0.88620 0.99126 1.22763 1.00240 0.96919 0.97603 1.22725 0.96456 0.94515 1.02215 1.22625 0.96459 0.93936 0.90743 0.93381 1.21424 0.96395 0.92841 1.01753 1.22374 0.97406 0.87494 0.99795 1.63645 1.34996 1.02966 1.24272 1.22802 0.99022 0.95125 0.90702 1.23094 0.98233 0.98290 0.99050 1.20182 0.94663 0.93759 0.92847 0.94662 1.21194 0.94288 1.05222 1.34874 0.94970 1.25866 0.98141 0.97773 0.96512 1.70051 1.23623 1.19566 1.45803 0.85847 0.80537 0.76643 0.79768 1.18893 1.22105 1.16977 1.22762 0.90466 0.93900 0.98892 0.95187 0.90889 0.91998 0.90425 0.92335 0.89294 0.91240 0.89815 0.90416 0.91199 0.91268 0.96269 0.90914 0.89938 0.91820 0.92555 0.93074 0.92472 0.95409 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 8.78 127.69 1.12 1.42 16 2 N -0.54 -11.36 4.94 -886.66 -4.38 -15.74 16 3 C 0.04 0.62 6.89 86.65 0.60 1.22 16 4 C -0.14 -1.82 6.94 31.77 0.22 -1.60 16 5 C -0.12 -1.88 6.49 31.98 0.21 -1.67 16 6 C 0.07 1.44 2.59 45.39 0.12 1.55 16 7 H 0.05 1.02 7.81 -2.39 -0.02 1.00 16 8 C -0.09 -2.03 5.04 30.60 0.15 -1.88 16 9 C 0.06 1.68 3.18 86.31 0.27 1.96 16 10 N -0.53 -18.78 5.16 -885.53 -4.57 -23.34 16 11 C 0.05 1.72 6.12 86.65 0.53 2.25 16 12 C -0.15 -6.20 5.09 31.78 0.16 -6.04 16 13 C 0.00 0.24 2.41 -10.15 -0.02 0.21 16 14 H 0.04 1.72 7.41 -2.39 -0.02 1.70 16 15 C -0.52 -30.13 9.13 25.60 0.23 -29.90 16 16 H 0.03 2.07 8.03 -2.91 -0.02 2.05 16 17 C 0.01 0.84 5.46 84.65 0.46 1.30 16 18 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.95 45.04 24.52 68.60 1.68 46.72 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.25 -10.92 6.48 99.48 0.64 -10.28 16 23 C 0.07 2.82 6.12 86.77 0.53 3.35 16 24 H 0.03 0.56 8.09 -2.39 -0.02 0.55 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.45 5.28 -2.39 -0.01 1.44 16 27 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 0.87 7.55 -2.39 -0.02 0.85 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 33 H 0.07 1.57 7.03 -2.39 -0.02 1.55 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.02 0.59 7.88 -2.39 -0.02 0.57 16 36 H 0.07 2.21 6.34 -2.39 -0.02 2.20 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.06 1.89 6.95 -2.39 -0.02 1.87 16 39 H 0.06 2.30 5.12 -2.39 -0.01 2.29 16 40 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 41 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.03 1.21 7.70 -2.39 -0.02 1.20 16 43 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -64.96 318.25 -1.49 -66.45 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.89 Total: 13.52 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.59 Total: -27.81 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -8.65 Total: -98.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.68 Total: 46.72 kcal Total: -64.96 -1.49 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.264 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds