Wall clock time and date at job start Mon Mar 30 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47845 * 110.99431 * 2 1 4 4 C 1.54906 * 104.79146 * 146.36643 * 3 2 1 5 5 C 1.55146 * 101.65370 * 322.92911 * 4 3 2 6 6 C 1.47441 * 111.00092 * 120.84432 * 2 1 3 7 7 H 1.09003 * 109.88312 * 117.17684 * 6 2 1 8 8 C 1.52996 * 109.89113 * 356.15187 * 6 2 1 9 9 C 1.52999 * 109.47361 * 177.00157 * 8 6 2 10 10 N 1.46895 * 109.47343 * 185.15966 * 9 8 6 11 11 C 1.47852 * 111.00019 * 290.83980 * 10 9 8 12 12 C 1.54905 * 104.79604 * 213.63600 * 11 10 9 13 13 C 1.55141 * 101.65290 * 37.06751 * 12 11 10 14 14 H 1.09004 * 110.70215 * 82.73073 * 13 12 11 15 15 C 1.50699 * 110.85356 * 205.88926 * 13 12 11 16 16 H 1.08000 * 119.99289 * 113.68692 * 15 13 12 17 17 C 1.37875 * 120.00368 * 293.68871 * 15 13 12 18 18 N 1.31508 * 120.00063 * 179.97438 * 17 15 13 19 19 Si 1.86798 * 119.99830 * 359.97438 * 17 15 13 20 20 H 1.48509 * 109.46947 * 90.00412 * 19 17 15 21 21 H 1.48496 * 109.47156 * 209.99709 * 19 17 15 22 22 H 1.48496 * 109.47583 * 330.00394 * 19 17 15 23 23 C 1.47436 * 111.00489 * 169.99787 * 10 9 8 24 24 H 1.09004 * 109.47058 * 298.10569 * 1 2 3 25 25 H 1.09001 * 109.47681 * 58.11349 * 1 2 3 26 26 H 1.09001 * 109.46984 * 178.11417 * 1 2 3 27 27 H 1.08994 * 110.37750 * 265.19251 * 3 2 1 28 28 H 1.08999 * 110.37485 * 27.54291 * 3 2 1 29 29 H 1.08996 * 110.99588 * 81.02189 * 4 3 2 30 30 H 1.09006 * 110.99010 * 204.84136 * 4 3 2 31 31 H 1.08998 * 110.70451 * 277.27080 * 5 4 3 32 32 H 1.09002 * 110.70516 * 154.03867 * 5 4 3 33 33 H 1.09007 * 109.47006 * 296.99619 * 8 6 2 34 34 H 1.08999 * 109.47233 * 56.99852 * 8 6 2 35 35 H 1.09004 * 109.46770 * 305.15700 * 9 8 6 36 36 H 1.08996 * 109.46975 * 65.15700 * 9 8 6 37 37 H 1.08998 * 110.37204 * 332.46704 * 11 10 9 38 38 H 1.09001 * 110.37116 * 94.80236 * 11 10 9 39 39 H 1.08996 * 110.98869 * 278.97465 * 12 11 10 40 40 H 1.09002 * 111.01849 * 155.17270 * 12 11 10 41 41 H 0.97001 * 120.00224 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.89323 * 242.66656 * 23 10 9 43 43 H 1.09012 * 109.88534 * 3.68604 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9158 0.2821 1.9314 6 6 1.9974 -0.7057 1.1818 7 1 2.5674 -1.5801 0.8674 8 6 0.8439 -1.1357 2.0902 9 6 1.3966 -1.9314 3.2744 10 7 0.2822 -2.4491 4.0794 11 6 -0.4229 -1.3518 4.7758 12 6 -0.8877 -1.9694 6.1182 13 6 0.3073 -2.8950 6.4677 14 1 1.1053 -2.3291 6.9484 15 6 -0.1371 -4.0365 7.3455 16 1 -0.1065 -5.0491 6.9712 17 6 -0.5827 -3.7882 8.6264 18 7 -0.9710 -4.7842 9.3922 19 14 -0.6350 -2.0368 9.2740 20 1 -1.9561 -1.4336 8.9639 21 1 -0.4282 -2.0464 10.7445 22 1 0.4376 -1.2381 8.6285 23 6 0.7611 -3.4132 5.0868 24 1 -0.3633 0.4841 0.9065 25 1 -0.3634 0.5428 -0.8726 26 1 -0.3633 -1.0271 -0.0338 27 1 2.2146 1.7040 -1.0181 28 1 1.2888 2.0592 0.4725 29 1 4.1301 0.9283 0.2243 30 1 3.5493 2.2721 1.2641 31 1 2.3744 0.7746 2.7391 32 1 3.8001 -0.2279 2.3137 33 1 0.3222 -0.2521 2.4580 34 1 0.1499 -1.7588 1.5260 35 1 1.9953 -2.7640 2.9049 36 1 2.0184 -1.2817 3.8901 37 1 0.2563 -0.5187 4.9563 38 1 -1.2823 -1.0222 4.1919 39 1 -1.8030 -2.5464 5.9863 40 1 -1.0202 -1.1991 6.8779 41 1 -1.2842 -4.6096 10.2935 42 1 0.3258 -4.3944 4.8975 43 1 1.8487 -3.4772 5.0512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:17 Heat of formation + Delta-G solvation = 7.533221 kcal Electronic energy + Delta-G solvation = -19293.790622 eV Core-core repulsion = 16566.502983 eV Total energy + Delta-G solvation = -2727.287639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76767 -38.19120 -33.85114 -32.38254 -32.16343 -30.11143 -28.50354 -26.71032 -25.75124 -24.07943 -22.68913 -21.41035 -20.31813 -19.54591 -19.25258 -16.95691 -16.42242 -15.90182 -15.43462 -14.71579 -14.59201 -14.22211 -13.82880 -13.67429 -13.32960 -12.81477 -12.68773 -12.52497 -12.24535 -12.05779 -11.68267 -11.54204 -11.47685 -11.29430 -11.11544 -10.89642 -10.80682 -10.66323 -10.49824 -10.41431 -10.04873 -9.84646 -9.48553 -9.07473 -8.56727 -8.42735 -7.75143 -6.08829 -4.07669 3.25970 3.34629 3.35815 3.82139 4.37001 4.39896 4.47719 4.57249 4.77886 5.01922 5.15976 5.20899 5.23691 5.30926 5.34291 5.40376 5.45002 5.56528 5.59554 5.66094 5.71021 5.75027 5.78532 5.87668 5.91076 5.94936 6.06276 6.08618 6.22722 6.26589 6.31851 6.59664 6.75335 6.81642 6.84207 6.90070 7.05589 7.29801 7.61065 7.69171 7.75696 8.50874 8.94986 9.53678 11.04425 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041125 B = 0.004347 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.679934 B = 6439.146027 C = 6552.303326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.530 5.530 3 C 0.040 3.960 4 C -0.131 4.131 5 C -0.139 4.139 6 C 0.072 3.928 7 H 0.087 0.913 8 C -0.129 4.129 9 C 0.055 3.945 10 N -0.532 5.532 11 C 0.044 3.956 12 C -0.134 4.134 13 C -0.003 4.003 14 H 0.030 0.970 15 C -0.506 4.506 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.901 5.901 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.268 1.268 23 C 0.058 3.942 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.077 0.923 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 12.605 -16.771 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.088 4.088 4 C -0.169 4.169 5 C -0.177 4.177 6 C -0.036 4.036 7 H 0.105 0.895 8 C -0.167 4.167 9 C -0.075 4.075 10 N -0.256 5.256 11 C -0.084 4.084 12 C -0.173 4.173 13 C -0.022 4.022 14 H 0.048 0.952 15 C -0.544 4.544 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.193 1.193 23 C -0.069 4.069 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.510 12.037 -17.403 21.866 hybrid contribution 0.139 1.785 1.812 2.547 sum 5.649 13.822 -15.591 21.588 Atomic orbital electron populations 1.22591 0.87825 1.02558 1.00300 1.63754 1.08215 1.13894 1.39536 1.23065 0.95633 0.89852 1.00253 1.22699 0.97652 0.99385 0.97123 1.22898 0.99927 0.97025 0.97862 1.22470 0.95418 0.97118 0.88625 0.89547 1.22163 0.97943 1.00087 0.96538 1.22225 0.92886 0.97858 0.94498 1.63605 1.24483 1.13845 1.23690 1.23016 0.97336 0.92621 0.95393 1.23099 1.01599 0.98609 0.93947 1.20333 0.93256 0.95494 0.93144 0.95220 1.20954 1.42871 0.93495 0.97118 0.90611 1.24978 0.94656 0.96654 0.96700 1.69895 1.44041 1.31065 1.08911 0.86901 0.78902 0.85859 0.77521 1.20262 1.21944 1.19269 1.22820 0.97071 0.96160 0.90812 0.94862 0.92037 0.90709 0.90441 0.93759 0.90709 0.91027 0.91356 0.90684 0.92135 0.90225 0.91219 0.95224 0.94989 0.91707 0.90590 0.93209 0.92656 0.90492 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.26 60.07 0.50 0.65 16 2 N -0.53 -5.71 5.44 -231.57 -1.26 -6.98 16 3 C 0.04 0.37 6.73 -2.30 -0.02 0.35 16 4 C -0.13 -1.13 7.08 -24.59 -0.17 -1.30 16 5 C -0.14 -1.39 5.60 -24.91 -0.14 -1.53 16 6 C 0.07 0.79 3.48 -66.73 -0.23 0.56 16 7 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.13 -1.59 3.30 -26.73 -0.09 -1.67 16 9 C 0.05 0.79 4.31 -3.83 -0.02 0.78 16 10 N -0.53 -9.52 5.16 -231.25 -1.19 -10.72 16 11 C 0.04 0.79 5.87 -2.29 -0.01 0.78 16 12 C -0.13 -2.89 5.45 -24.59 -0.13 -3.02 16 13 C 0.00 -0.06 2.32 -89.95 -0.21 -0.27 16 14 H 0.03 0.72 7.03 -51.93 -0.37 0.36 16 15 C -0.51 -14.19 9.06 -34.44 -0.31 -14.50 16 16 H 0.08 2.29 7.78 -52.49 -0.41 1.88 16 17 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 18 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 19 Si 0.88 21.75 24.80 -169.99 -4.22 17.53 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.38 6.46 56.52 0.36 -6.01 16 23 C 0.06 1.19 6.45 -2.84 -0.02 1.18 16 24 H 0.03 0.34 6.51 -51.93 -0.34 0.00 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.76 6.71 -51.93 -0.35 0.41 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.40 7.80 -51.93 -0.40 0.00 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.77 6.33 -51.93 -0.33 0.44 16 34 H 0.08 1.03 6.42 -51.93 -0.33 0.70 16 35 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 37 H 0.03 0.55 7.62 -51.93 -0.40 0.15 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.71 8.05 -51.93 -0.42 1.29 16 40 H 0.05 1.07 5.59 -51.93 -0.29 0.78 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.08 1.67 7.63 -51.93 -0.40 1.27 16 43 H 0.04 0.73 7.55 -51.92 -0.39 0.33 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -29.54 316.81 -9.82 -39.36 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.75 Total: -1.16 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.95 Total: -16.03 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -1.68 Total: -44.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.22 Total: 17.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.54 -9.82 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.894 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds