Wall clock time and date at job start Mon Mar 30 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47845 * 110.99431 * 2 1 4 4 C 1.54906 * 104.79146 * 146.36643 * 3 2 1 5 5 C 1.55146 * 101.65370 * 322.92911 * 4 3 2 6 6 C 1.47441 * 111.00092 * 120.84432 * 2 1 3 7 7 H 1.09003 * 109.88312 * 117.17684 * 6 2 1 8 8 C 1.52996 * 109.89113 * 356.15187 * 6 2 1 9 9 C 1.52999 * 109.47361 * 177.00157 * 8 6 2 10 10 N 1.46895 * 109.47343 * 185.15966 * 9 8 6 11 11 C 1.47852 * 111.00019 * 290.83980 * 10 9 8 12 12 C 1.54905 * 104.79604 * 213.63600 * 11 10 9 13 13 C 1.55141 * 101.65290 * 37.06751 * 12 11 10 14 14 H 1.09004 * 110.70215 * 82.73073 * 13 12 11 15 15 C 1.50699 * 110.85356 * 205.88926 * 13 12 11 16 16 H 1.08000 * 119.99289 * 113.68692 * 15 13 12 17 17 C 1.37875 * 120.00368 * 293.68871 * 15 13 12 18 18 N 1.31508 * 120.00063 * 179.97438 * 17 15 13 19 19 Si 1.86798 * 119.99830 * 359.97438 * 17 15 13 20 20 H 1.48509 * 109.46947 * 90.00412 * 19 17 15 21 21 H 1.48496 * 109.47156 * 209.99709 * 19 17 15 22 22 H 1.48496 * 109.47583 * 330.00394 * 19 17 15 23 23 C 1.47436 * 111.00489 * 169.99787 * 10 9 8 24 24 H 1.09004 * 109.47058 * 298.10569 * 1 2 3 25 25 H 1.09001 * 109.47681 * 58.11349 * 1 2 3 26 26 H 1.09001 * 109.46984 * 178.11417 * 1 2 3 27 27 H 1.08994 * 110.37750 * 265.19251 * 3 2 1 28 28 H 1.08999 * 110.37485 * 27.54291 * 3 2 1 29 29 H 1.08996 * 110.99588 * 81.02189 * 4 3 2 30 30 H 1.09006 * 110.99010 * 204.84136 * 4 3 2 31 31 H 1.08998 * 110.70451 * 277.27080 * 5 4 3 32 32 H 1.09002 * 110.70516 * 154.03867 * 5 4 3 33 33 H 1.09007 * 109.47006 * 296.99619 * 8 6 2 34 34 H 1.08999 * 109.47233 * 56.99852 * 8 6 2 35 35 H 1.09004 * 109.46770 * 305.15700 * 9 8 6 36 36 H 1.08996 * 109.46975 * 65.15700 * 9 8 6 37 37 H 1.08998 * 110.37204 * 332.46704 * 11 10 9 38 38 H 1.09001 * 110.37116 * 94.80236 * 11 10 9 39 39 H 1.08996 * 110.98869 * 278.97465 * 12 11 10 40 40 H 1.09002 * 111.01849 * 155.17270 * 12 11 10 41 41 H 0.97001 * 120.00224 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.89323 * 242.66656 * 23 10 9 43 43 H 1.09012 * 109.88534 * 3.68604 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9158 0.2821 1.9314 6 6 1.9974 -0.7057 1.1818 7 1 2.5674 -1.5801 0.8674 8 6 0.8439 -1.1357 2.0902 9 6 1.3966 -1.9314 3.2744 10 7 0.2822 -2.4491 4.0794 11 6 -0.4229 -1.3518 4.7758 12 6 -0.8877 -1.9694 6.1182 13 6 0.3073 -2.8950 6.4677 14 1 1.1053 -2.3291 6.9484 15 6 -0.1371 -4.0365 7.3455 16 1 -0.1065 -5.0491 6.9712 17 6 -0.5827 -3.7882 8.6264 18 7 -0.9710 -4.7842 9.3922 19 14 -0.6350 -2.0368 9.2740 20 1 -1.9561 -1.4336 8.9639 21 1 -0.4282 -2.0464 10.7445 22 1 0.4376 -1.2381 8.6285 23 6 0.7611 -3.4132 5.0868 24 1 -0.3633 0.4841 0.9065 25 1 -0.3634 0.5428 -0.8726 26 1 -0.3633 -1.0271 -0.0338 27 1 2.2146 1.7040 -1.0181 28 1 1.2888 2.0592 0.4725 29 1 4.1301 0.9283 0.2243 30 1 3.5493 2.2721 1.2641 31 1 2.3744 0.7746 2.7391 32 1 3.8001 -0.2279 2.3137 33 1 0.3222 -0.2521 2.4580 34 1 0.1499 -1.7588 1.5260 35 1 1.9953 -2.7640 2.9049 36 1 2.0184 -1.2817 3.8901 37 1 0.2563 -0.5187 4.9563 38 1 -1.2823 -1.0222 4.1919 39 1 -1.8030 -2.5464 5.9863 40 1 -1.0202 -1.1991 6.8779 41 1 -1.2842 -4.6096 10.2935 42 1 0.3258 -4.3944 4.8975 43 1 1.8487 -3.4772 5.0512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:16 Heat of formation + Delta-G solvation = -13.241318 kcal Electronic energy + Delta-G solvation = -19294.691473 eV Core-core repulsion = 16566.502983 eV Total energy + Delta-G solvation = -2728.188491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68644 -39.62084 -35.45896 -33.96986 -33.06330 -31.52948 -30.15903 -27.89819 -26.50776 -25.85153 -23.91614 -22.26246 -21.70597 -21.19731 -20.25281 -19.02794 -17.38627 -17.02019 -16.54867 -16.34011 -15.87703 -15.35320 -15.19247 -14.88751 -14.49995 -14.35926 -14.12273 -13.73331 -13.54374 -13.27530 -13.12714 -12.81099 -12.65844 -12.32422 -12.23521 -12.06607 -11.96233 -11.91190 -11.84854 -11.61464 -11.55008 -11.46542 -11.29470 -11.13887 -10.73841 -9.23059 -9.18247 -8.31275 -6.35235 1.30279 1.32971 1.43170 2.31723 2.96557 3.03272 3.16679 3.72324 3.77357 3.86275 3.98544 4.07674 4.18456 4.25018 4.34040 4.43091 4.46162 4.51643 4.52782 4.62906 4.66104 4.66730 4.73775 4.81146 4.83124 4.96106 4.99978 5.01559 5.05750 5.11024 5.14975 5.24272 5.29564 5.32068 5.41681 5.47205 5.69180 6.03717 6.09200 6.13471 6.24882 6.32887 6.70588 7.29808 8.85697 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041125 B = 0.004347 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.679934 B = 6439.146027 C = 6552.303326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.037 3.963 4 C -0.126 4.126 5 C -0.139 4.139 6 C 0.074 3.926 7 H 0.082 0.918 8 C -0.115 4.115 9 C 0.056 3.944 10 N -0.537 5.537 11 C 0.054 3.946 12 C -0.134 4.134 13 C -0.008 4.008 14 H 0.030 0.970 15 C -0.513 4.513 16 H 0.034 0.966 17 C 0.014 3.986 18 N -0.950 5.950 19 Si 0.944 3.056 20 H -0.263 1.263 21 H -0.292 1.292 22 H -0.248 1.248 23 C 0.067 3.933 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.266 0.734 42 H 0.054 0.946 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 15.510 -18.057 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.266 5.266 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.034 4.034 7 H 0.100 0.900 8 C -0.154 4.154 9 C -0.073 4.073 10 N -0.262 5.262 11 C -0.073 4.073 12 C -0.172 4.172 13 C -0.027 4.027 14 H 0.048 0.952 15 C -0.551 4.551 16 H 0.052 0.948 17 C -0.183 4.183 18 N -0.591 5.591 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.172 1.172 23 C -0.061 4.061 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.219 14.955 -18.723 24.756 hybrid contribution -0.067 0.776 2.149 2.286 sum 6.153 15.731 -16.574 23.664 Atomic orbital electron populations 1.22582 0.87512 1.02372 1.00689 1.63771 1.08616 1.14910 1.39260 1.23138 0.95877 0.89004 1.00972 1.22698 0.97432 0.99654 0.96568 1.22888 0.99744 0.97116 0.97995 1.22411 0.94970 0.97404 0.88640 0.90007 1.22029 0.98233 0.99443 0.95674 1.22298 0.91990 0.98326 0.94690 1.63580 1.25857 1.13942 1.22793 1.22980 0.98319 0.92567 0.93474 1.22978 0.99779 0.98138 0.96322 1.20289 0.94167 0.94445 0.93847 0.95240 1.21232 1.42493 0.93341 0.98072 0.94816 1.25860 0.94290 1.01248 0.96949 1.70049 1.45763 1.33735 1.09520 0.85862 0.80019 0.80478 0.76777 1.18832 1.21886 1.17206 1.22586 0.97631 0.95922 0.89968 0.95127 0.90957 0.91252 0.89580 0.93591 0.90334 0.89735 0.91880 0.90317 0.92142 0.90899 0.90818 0.94749 0.93330 0.89674 0.92379 0.92743 0.92506 0.92717 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.26 127.69 1.06 1.35 16 2 N -0.54 -10.43 5.44 -886.55 -4.83 -15.25 16 3 C 0.04 0.59 6.73 86.77 0.58 1.17 16 4 C -0.13 -1.80 7.08 31.98 0.23 -1.58 16 5 C -0.14 -2.41 5.60 31.78 0.18 -2.23 16 6 C 0.07 1.46 3.48 45.26 0.16 1.62 16 7 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.12 -2.57 3.30 30.59 0.10 -2.46 16 9 C 0.06 1.48 4.31 86.30 0.37 1.85 16 10 N -0.54 -18.23 5.16 -885.56 -4.57 -22.80 16 11 C 0.05 1.78 5.87 86.77 0.51 2.29 16 12 C -0.13 -5.53 5.45 31.98 0.17 -5.35 16 13 C -0.01 -0.36 2.32 -10.36 -0.02 -0.39 16 14 H 0.03 1.38 7.03 -2.38 -0.02 1.36 16 15 C -0.51 -29.56 9.06 25.60 0.23 -29.33 16 16 H 0.03 2.16 7.78 -2.91 -0.02 2.13 16 17 C 0.01 0.79 5.46 84.66 0.46 1.26 16 18 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 19 Si 0.94 44.42 24.80 68.60 1.70 46.12 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.25 -10.82 6.46 99.48 0.64 -10.18 16 23 C 0.07 2.69 6.45 86.65 0.56 3.25 16 24 H 0.03 0.56 6.51 -2.39 -0.02 0.54 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.30 6.71 -2.39 -0.02 1.29 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 0.71 7.80 -2.39 -0.02 0.69 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.36 6.33 -2.38 -0.02 1.35 16 34 H 0.07 1.74 6.42 -2.39 -0.02 1.73 16 35 H 0.07 1.91 8.03 -2.39 -0.02 1.90 16 36 H 0.03 0.91 7.27 -2.39 -0.02 0.89 16 37 H 0.05 1.46 7.62 -2.39 -0.02 1.45 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 40 H 0.05 2.18 5.59 -2.39 -0.01 2.17 16 41 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.05 2.43 7.63 -2.39 -0.02 2.41 16 43 H 0.05 1.89 7.55 -2.38 -0.02 1.88 16 Total: -1.00 -64.15 316.81 -1.92 -66.07 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.89 Total: 13.95 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.59 Total: -28.54 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -9.10 Total: -97.60 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.70 Total: 46.12 kcal Total: -64.15 -1.92 -66.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds