Wall clock time and date at job start Mon Mar 30 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48809 * 111.18235 * 2 1 4 4 C 1.54938 * 103.35061 * 159.50643 * 3 2 1 5 5 C 1.54597 * 102.92037 * 322.69308 * 4 3 2 6 6 C 1.47897 * 111.00404 * 117.33571 * 2 1 3 7 7 H 1.09000 * 109.91639 * 333.71428 * 6 2 1 8 8 C 1.53003 * 109.91625 * 94.80523 * 6 2 1 9 9 C 1.53009 * 109.47000 * 292.32853 * 8 6 2 10 10 N 1.46899 * 109.46879 * 185.47577 * 9 8 6 11 11 C 1.48532 * 111.00255 * 52.60050 * 10 9 8 12 12 C 1.54938 * 103.22354 * 159.72409 * 11 10 9 13 13 C 1.54600 * 102.92097 * 322.58241 * 12 11 10 14 14 H 1.08993 * 110.39555 * 262.99975 * 13 12 11 15 15 C 1.50705 * 110.30642 * 140.87696 * 13 12 11 16 16 H 1.08004 * 119.99707 * 244.28649 * 15 13 12 17 17 C 1.37879 * 119.99998 * 64.28565 * 15 13 12 18 18 N 1.31517 * 119.99917 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99945 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47201 * 59.99759 * 19 17 15 21 21 H 1.48493 * 109.47319 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47177 * 299.99972 * 19 17 15 23 23 C 1.47904 * 110.99941 * 170.00030 * 10 9 8 24 24 H 1.09007 * 109.47448 * 307.74374 * 1 2 3 25 25 H 1.09002 * 109.47763 * 67.74855 * 1 2 3 26 26 H 1.09002 * 109.47164 * 187.74743 * 1 2 3 27 27 H 1.09003 * 110.52287 * 41.07482 * 3 2 1 28 28 H 1.09006 * 110.70206 * 278.02532 * 3 2 1 29 29 H 1.08995 * 110.72577 * 204.33093 * 4 3 2 30 30 H 1.09006 * 110.87421 * 81.11741 * 4 3 2 31 31 H 1.09003 * 110.30693 * 263.04032 * 5 4 3 32 32 H 1.08997 * 110.31002 * 140.86872 * 5 4 3 33 33 H 1.08997 * 109.47052 * 52.32248 * 8 6 2 34 34 H 1.09002 * 109.47031 * 172.33069 * 8 6 2 35 35 H 1.08997 * 109.46713 * 305.46945 * 9 8 6 36 36 H 1.09000 * 109.47078 * 65.46914 * 9 8 6 37 37 H 1.08994 * 110.66586 * 278.15416 * 11 10 9 38 38 H 1.08998 * 110.66412 * 41.28695 * 11 10 9 39 39 H 1.09008 * 110.72380 * 204.23155 * 12 11 10 40 40 H 1.08998 * 110.88151 * 81.01734 * 12 11 10 41 41 H 0.96999 * 119.99613 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.91530 * 333.50497 * 23 10 9 43 43 H 1.09008 * 109.91649 * 94.59792 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4526 1.2109 0.5278 5 6 3.2974 0.1060 1.5979 6 6 1.9991 -0.6340 1.2265 7 1 1.2744 -0.5413 2.0354 8 6 2.2984 -2.1110 0.9621 9 6 0.9867 -2.8633 0.7283 10 7 1.2621 -4.3009 0.6048 11 6 2.0571 -4.7918 1.7594 12 6 1.7987 -6.3194 1.7438 13 6 0.3121 -6.4144 1.3300 14 1 -0.3209 -6.5255 2.2103 15 6 0.1044 -7.5722 0.3880 16 1 -0.2152 -7.3913 -0.6277 17 6 0.3222 -8.8624 0.8228 18 7 0.7118 -9.0825 2.0595 19 14 0.0654 -10.2974 -0.3452 20 1 0.9723 -10.1542 -1.5123 21 1 0.3633 -11.5695 0.3606 22 1 -1.3442 -10.3095 -0.8122 23 6 0.0074 -5.0839 0.6171 24 1 -0.3634 0.6291 0.8127 25 1 -0.3635 0.3891 -0.9511 26 1 -0.3633 -1.0183 0.1385 27 1 1.4272 2.0219 0.6707 28 1 2.0132 1.7983 -1.0097 29 1 3.8147 2.1354 0.9775 30 1 4.1200 0.8843 -0.2698 31 1 3.2096 0.5496 2.5897 32 1 4.1458 -0.5773 1.5619 33 1 2.9311 -2.2011 0.0792 34 1 2.8131 -2.5372 1.8232 35 1 0.3153 -2.6930 1.5699 36 1 0.5194 -2.5027 -0.1880 37 1 3.1163 -4.5794 1.6152 38 1 1.6981 -4.3503 2.6891 39 1 1.9510 -6.7466 2.7351 40 1 2.4356 -6.8137 1.0103 41 1 0.8654 -9.9902 2.3652 42 1 -0.7647 -4.5396 1.1608 43 1 -0.3220 -5.2736 -0.4046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:19 Heat of formation + Delta-G solvation = -17.659901 kcal Electronic energy + Delta-G solvation = -19175.808791 eV Core-core repulsion = 16447.428696 eV Total energy + Delta-G solvation = -2728.380095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44444 -39.41348 -35.48177 -33.68854 -33.10692 -31.15749 -29.99609 -27.82166 -26.57357 -25.91234 -23.64152 -22.01006 -21.46949 -21.25123 -20.77407 -18.57499 -17.00809 -16.83028 -16.56972 -16.42030 -15.86049 -15.71824 -14.71010 -14.57661 -14.51276 -13.92594 -13.77480 -13.73785 -13.46616 -13.21064 -12.96929 -12.66637 -12.53706 -12.47029 -12.43535 -12.20281 -12.11534 -11.93555 -11.65120 -11.55976 -11.40348 -11.32820 -11.07658 -10.82603 -10.48754 -9.36078 -9.20888 -8.12358 -6.21119 1.42223 1.44245 1.51701 2.44561 3.06322 3.15841 3.22011 3.68404 3.82639 4.04777 4.10293 4.17638 4.22859 4.39857 4.42011 4.44710 4.50883 4.54248 4.56352 4.62749 4.67815 4.75461 4.85928 4.91402 4.98851 5.01082 5.02777 5.07203 5.16796 5.20666 5.27875 5.30795 5.36945 5.41769 5.55972 5.73637 5.84832 6.00993 6.13490 6.18888 6.33234 6.40902 6.86606 7.45379 8.97184 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047557 B = 0.004000 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.620533 B = 6999.155198 C = 7278.730198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.532 5.532 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.068 3.932 7 H 0.047 0.953 8 C -0.093 4.093 9 C 0.053 3.947 10 N -0.526 5.526 11 C 0.045 3.955 12 C -0.085 4.085 13 C 0.030 3.970 14 H -0.001 1.001 15 C -0.528 4.528 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.056 3.944 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 21.034 -0.860 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.257 5.257 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.041 4.041 7 H 0.065 0.935 8 C -0.131 4.131 9 C -0.074 4.074 10 N -0.250 5.250 11 C -0.083 4.083 12 C -0.124 4.124 13 C 0.011 3.989 14 H 0.018 0.982 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.071 4.071 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.337 20.545 -1.701 21.067 hybrid contribution -1.161 -0.681 1.089 1.731 sum 3.176 19.864 -0.612 20.126 Atomic orbital electron populations 1.22658 0.87704 1.01921 1.01513 1.64697 1.08380 1.15710 1.36887 1.23357 0.95463 0.89105 1.01538 1.22468 0.96109 0.98865 0.98247 1.22463 0.96628 0.97896 0.99499 1.22393 0.96716 0.94155 0.90860 0.93514 1.21588 0.96427 0.93166 1.01914 1.22429 0.97692 0.87397 0.99922 1.64754 1.15764 1.03601 1.40894 1.23190 0.98509 0.95027 0.91533 1.22175 0.98129 0.93307 0.98764 1.19479 0.93214 0.92008 0.94161 0.98246 1.21496 1.45581 0.91869 0.97668 0.92915 1.25762 0.94892 1.01412 0.96641 1.70082 1.47371 1.21280 1.17255 0.85646 0.78816 0.78367 0.79048 1.19728 1.20884 1.19558 1.22829 0.90344 0.94147 0.99811 0.94972 0.90615 0.91739 0.93294 0.89606 0.89363 0.91041 0.90460 0.90671 0.91499 0.91439 0.96062 0.90569 0.89733 0.94295 0.94185 0.94475 0.93057 0.95340 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.12 127.69 1.16 1.37 16 2 N -0.53 -11.38 5.07 -883.30 -4.48 -15.86 16 3 C 0.03 0.54 6.58 86.60 0.57 1.11 16 4 C -0.12 -1.75 7.06 31.80 0.22 -1.52 16 5 C -0.13 -2.15 6.57 31.47 0.21 -1.95 16 6 C 0.07 1.46 2.59 45.06 0.12 1.57 16 7 H 0.05 1.03 7.77 -2.39 -0.02 1.01 16 8 C -0.09 -2.43 4.48 30.60 0.14 -2.29 16 9 C 0.05 1.67 3.79 86.31 0.33 1.99 16 10 N -0.53 -20.64 5.40 -883.02 -4.76 -25.40 16 11 C 0.04 1.74 5.09 86.65 0.44 2.18 16 12 C -0.08 -4.17 5.75 31.80 0.18 -3.98 16 13 C 0.03 1.60 2.87 -10.66 -0.03 1.57 16 14 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 15 C -0.53 -30.24 8.38 25.60 0.21 -30.02 16 16 H 0.05 2.98 7.35 -2.91 -0.02 2.96 16 17 C 0.01 0.66 5.34 84.65 0.45 1.11 16 18 N -0.92 -54.66 12.62 21.45 0.27 -54.39 16 19 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.06 2.50 6.34 86.44 0.55 3.05 16 24 H 0.03 0.58 7.96 -2.38 -0.02 0.56 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.45 5.26 -2.39 -0.01 1.44 16 27 H 0.05 0.73 7.89 -2.39 -0.02 0.71 16 28 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.30 7.69 -2.39 -0.02 1.28 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.74 6.49 -2.39 -0.02 1.72 16 35 H 0.02 0.66 7.81 -2.39 -0.02 0.65 16 36 H 0.08 2.39 6.26 -2.39 -0.01 2.37 16 37 H 0.08 2.94 7.55 -2.39 -0.02 2.92 16 38 H 0.04 1.42 8.01 -2.39 -0.02 1.40 16 39 H 0.04 2.04 8.12 -2.38 -0.02 2.02 16 40 H 0.04 1.96 7.85 -2.39 -0.02 1.94 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 43 H 0.06 2.76 7.40 -2.38 -0.02 2.75 16 Total: -1.00 -62.32 324.18 -1.45 -63.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.95 Total: 10.88 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.55 Total: -25.80 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -8.98 Total: -95.65 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.32 -1.45 -63.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.111 kcal (2) G-P(sol) polarization free energy of solvation -62.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds