Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47852 * 110.99532 * 2 1 4 4 C 1.54910 * 104.79138 * 146.36324 * 3 2 1 5 5 C 1.55397 * 101.74442 * 323.01742 * 4 3 2 6 6 C 1.47439 * 111.00043 * 120.83979 * 2 1 3 7 7 H 1.09001 * 109.88867 * 117.17822 * 6 2 1 8 8 C 1.53003 * 109.89079 * 356.15201 * 6 2 1 9 9 C 1.52993 * 109.47327 * 174.28589 * 8 6 2 10 10 N 1.46902 * 109.47276 * 186.19574 * 9 8 6 11 11 C 1.47900 * 110.99948 * 70.27300 * 10 9 8 12 12 C 1.53993 * 107.05477 * 214.15625 * 11 10 9 13 13 C 1.54596 * 105.14242 * 1.22560 * 12 11 10 14 14 H 1.09002 * 110.72314 * 263.59970 * 13 12 11 15 15 C 1.50702 * 110.72334 * 140.49304 * 13 12 11 16 16 H 1.08006 * 119.99741 * 241.44922 * 15 13 12 17 17 C 1.37881 * 120.00157 * 61.45601 * 15 13 12 18 18 N 1.31518 * 119.99694 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99799 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47075 * 89.99988 * 19 17 15 21 21 H 1.48503 * 109.46811 * 209.99736 * 19 17 15 22 22 H 1.48495 * 109.47532 * 329.99725 * 19 17 15 23 23 C 1.48530 * 110.99768 * 312.87541 * 10 9 8 24 24 H 1.09004 * 109.47550 * 296.02858 * 1 2 3 25 25 H 1.08999 * 109.47556 * 56.03176 * 1 2 3 26 26 H 1.09002 * 109.47195 * 176.03219 * 1 2 3 27 27 H 1.08995 * 110.37349 * 265.19251 * 3 2 1 28 28 H 1.09000 * 110.37484 * 27.53797 * 3 2 1 29 29 H 1.09001 * 110.99282 * 81.02348 * 4 3 2 30 30 H 1.09001 * 110.98883 * 204.80206 * 4 3 2 31 31 H 1.08998 * 110.68210 * 277.17764 * 5 4 3 32 32 H 1.09000 * 110.84575 * 153.86067 * 5 4 3 33 33 H 1.09000 * 109.46855 * 54.28688 * 8 6 2 34 34 H 1.08997 * 109.47037 * 294.29210 * 8 6 2 35 35 H 1.08999 * 109.47651 * 306.19919 * 9 8 6 36 36 H 1.09003 * 109.47207 * 66.19754 * 9 8 6 37 37 H 1.08998 * 109.91753 * 333.50399 * 11 10 9 38 38 H 1.09000 * 109.91847 * 94.80355 * 11 10 9 39 39 H 1.09000 * 110.30783 * 120.14132 * 12 11 10 40 40 H 1.09000 * 110.31023 * 242.30611 * 12 11 10 41 41 H 0.96996 * 119.99254 * 180.02562 * 18 17 15 42 42 H 1.09005 * 110.66962 * 278.15536 * 23 10 9 43 43 H 1.08998 * 110.67226 * 41.28830 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3804 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9181 0.2790 1.9329 6 6 1.9974 -0.7056 1.1818 7 1 2.5673 -1.5800 0.8676 8 6 0.8438 -1.1356 2.0903 9 6 1.3887 -1.9883 3.2378 10 7 0.2696 -2.5234 4.0246 11 6 -0.4707 -3.5518 3.2617 12 6 -1.9529 -3.4308 3.6613 13 6 -2.0058 -2.2571 4.6662 14 1 -1.9781 -2.6258 5.6916 15 6 -3.2339 -1.4143 4.4375 16 1 -3.1320 -0.3741 4.1652 17 6 -4.4878 -1.9709 4.5761 18 7 -4.6118 -3.2377 4.9073 19 14 -6.0100 -0.9259 4.2934 20 1 -6.4055 -1.0039 2.8641 21 1 -7.1200 -1.4285 5.1423 22 1 -5.7148 0.4853 4.6490 23 6 -0.7193 -1.4596 4.3353 24 1 -0.3634 0.4510 0.9234 25 1 -0.3634 0.5742 -0.8523 26 1 -0.3634 -1.0252 -0.0711 27 1 2.2146 1.7039 -1.0182 28 1 1.2888 2.0593 0.4724 29 1 4.1302 0.9283 0.2243 30 1 3.5497 2.2722 1.2635 31 1 2.3782 0.7706 2.7422 32 1 3.8017 -0.2335 2.3133 33 1 0.1253 -1.7185 1.5140 34 1 0.3521 -0.2516 2.4962 35 1 1.9743 -2.8129 2.8314 36 1 2.0219 -1.3740 3.8780 37 1 -0.3587 -3.3731 2.1923 38 1 -0.0972 -4.5436 3.5163 39 1 -2.5636 -3.2076 2.7865 40 1 -2.2931 -4.3511 4.1362 41 1 -5.4939 -3.6293 5.0044 42 1 -0.3971 -0.8745 5.1967 43 1 -0.8774 -0.8165 3.4695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = 8.102593 kcal Electronic energy + Delta-G solvation = -19693.268741 eV Core-core repulsion = 16966.005791 eV Total energy + Delta-G solvation = -2727.262949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75451 -37.98386 -33.72572 -32.21127 -31.95612 -29.62468 -28.18297 -26.16327 -25.59625 -24.52539 -22.72185 -21.26598 -20.00117 -19.59299 -18.89085 -16.52347 -16.21973 -15.67688 -15.09472 -14.80223 -14.42199 -13.93209 -13.78576 -13.55097 -13.29398 -12.94788 -12.64654 -12.19400 -11.94175 -11.46011 -11.40236 -11.25362 -11.22216 -11.12331 -11.05284 -10.85271 -10.71018 -10.57474 -10.48289 -10.26521 -10.19070 -9.59953 -9.19221 -8.74442 -8.39652 -8.30271 -7.62220 -6.01927 -4.05359 3.28965 3.36164 3.38821 3.97890 4.41498 4.57493 4.60434 4.74808 4.88714 5.13875 5.26864 5.31385 5.33064 5.44613 5.50121 5.55973 5.60371 5.69504 5.75551 5.81241 5.82118 5.92605 5.96600 6.03382 6.08273 6.11720 6.27177 6.36412 6.41362 6.55796 6.60709 6.88484 6.99161 7.03836 7.16862 7.20140 7.61636 7.68698 7.77261 7.89687 8.04837 8.45124 8.97083 9.58797 11.07835 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.005549 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.808144 B = 5044.598497 C = 5670.238265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.039 3.961 4 C -0.130 4.130 5 C -0.137 4.137 6 C 0.075 3.925 7 H 0.082 0.918 8 C -0.174 4.174 9 C 0.051 3.949 10 N -0.521 5.521 11 C 0.030 3.970 12 C -0.101 4.101 13 C 0.052 3.948 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.034 3.966 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.237 5.878 -7.910 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.089 4.089 4 C -0.168 4.168 5 C -0.175 4.175 6 C -0.033 4.033 7 H 0.100 0.900 8 C -0.214 4.214 9 C -0.078 4.078 10 N -0.243 5.243 11 C -0.098 4.098 12 C -0.140 4.140 13 C 0.033 3.967 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.093 4.093 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.475 5.244 -7.846 16.451 hybrid contribution -1.567 1.241 -0.249 2.014 sum 11.909 6.485 -8.095 15.792 Atomic orbital electron populations 1.22584 0.87568 1.02531 1.00566 1.63758 1.08347 1.13823 1.39597 1.23062 0.95605 0.90038 1.00163 1.22732 0.97611 0.99324 0.97139 1.22931 0.99765 0.96962 0.97885 1.22435 0.95321 0.96960 0.88613 0.89951 1.22909 0.98663 1.01617 0.98195 1.22215 0.95112 0.97390 0.93124 1.64948 1.08944 1.11388 1.39022 1.22998 0.96625 0.95172 0.94971 1.22296 0.90582 1.01044 1.00032 1.19523 0.90175 0.91626 0.95332 0.94793 1.21075 0.90489 0.96359 1.47477 0.92800 1.24957 0.98867 0.94929 0.95040 1.69982 1.23261 1.11673 1.47579 0.86651 0.82956 0.80671 0.78063 1.20756 1.21201 1.19962 1.23483 0.93262 0.93777 0.98818 0.94482 0.92028 0.90947 0.90544 0.93671 0.90873 0.91062 0.91203 0.90750 0.90570 0.90946 0.91746 0.91431 0.95132 0.92224 0.92905 0.92205 0.93050 0.92295 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.24 60.06 0.49 0.70 16 2 N -0.53 -6.79 5.44 -231.56 -1.26 -8.05 16 3 C 0.04 0.42 6.73 -2.29 -0.02 0.41 16 4 C -0.13 -1.24 7.08 -24.45 -0.17 -1.42 16 5 C -0.14 -1.47 5.77 -24.77 -0.14 -1.62 16 6 C 0.08 0.94 3.44 -66.73 -0.23 0.71 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 8 C -0.17 -2.53 2.27 -26.73 -0.06 -2.59 16 9 C 0.05 0.78 5.23 -3.83 -0.02 0.76 16 10 N -0.52 -9.93 5.54 -230.46 -1.28 -11.20 16 11 C 0.03 0.59 6.43 -2.76 -0.02 0.57 16 12 C -0.10 -2.38 5.51 -25.37 -0.14 -2.52 16 13 C 0.05 1.32 2.98 -89.91 -0.27 1.06 16 14 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.52 -14.08 8.43 -34.44 -0.29 -14.37 16 16 H 0.05 1.45 7.78 -52.48 -0.41 1.04 16 17 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 18 N -0.89 -25.49 12.44 55.43 0.69 -24.80 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.03 0.71 5.66 -1.90 -0.01 0.70 16 24 H 0.04 0.52 6.47 -51.93 -0.34 0.19 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.00 6.80 -51.93 -0.35 0.65 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.23 4.59 -51.93 -0.24 0.99 16 34 H 0.07 1.15 5.09 -51.93 -0.26 0.89 16 35 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 37 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.32 7.84 -51.93 -0.41 0.91 16 40 H 0.06 1.50 8.04 -51.93 -0.42 1.08 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.04 0.90 5.29 -51.93 -0.27 0.63 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -28.15 318.36 -10.63 -38.78 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.59 Total: 0.22 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -0.97 Total: -15.93 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -1.85 Total: -44.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.15 -10.63 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.881 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds