Wall clock time and date at job start Mon Mar 30 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47852 * 110.99532 * 2 1 4 4 C 1.54910 * 104.79138 * 146.36324 * 3 2 1 5 5 C 1.55397 * 101.74442 * 323.01742 * 4 3 2 6 6 C 1.47439 * 111.00043 * 120.83979 * 2 1 3 7 7 H 1.09001 * 109.88867 * 117.17822 * 6 2 1 8 8 C 1.53003 * 109.89079 * 356.15201 * 6 2 1 9 9 C 1.52993 * 109.47327 * 174.28589 * 8 6 2 10 10 N 1.46902 * 109.47276 * 186.19574 * 9 8 6 11 11 C 1.47900 * 110.99948 * 70.27300 * 10 9 8 12 12 C 1.53993 * 107.05477 * 214.15625 * 11 10 9 13 13 C 1.54596 * 105.14242 * 1.22560 * 12 11 10 14 14 H 1.09002 * 110.72314 * 263.59970 * 13 12 11 15 15 C 1.50702 * 110.72334 * 140.49304 * 13 12 11 16 16 H 1.08006 * 119.99741 * 241.44922 * 15 13 12 17 17 C 1.37881 * 120.00157 * 61.45601 * 15 13 12 18 18 N 1.31518 * 119.99694 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99799 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47075 * 89.99988 * 19 17 15 21 21 H 1.48503 * 109.46811 * 209.99736 * 19 17 15 22 22 H 1.48495 * 109.47532 * 329.99725 * 19 17 15 23 23 C 1.48530 * 110.99768 * 312.87541 * 10 9 8 24 24 H 1.09004 * 109.47550 * 296.02858 * 1 2 3 25 25 H 1.08999 * 109.47556 * 56.03176 * 1 2 3 26 26 H 1.09002 * 109.47195 * 176.03219 * 1 2 3 27 27 H 1.08995 * 110.37349 * 265.19251 * 3 2 1 28 28 H 1.09000 * 110.37484 * 27.53797 * 3 2 1 29 29 H 1.09001 * 110.99282 * 81.02348 * 4 3 2 30 30 H 1.09001 * 110.98883 * 204.80206 * 4 3 2 31 31 H 1.08998 * 110.68210 * 277.17764 * 5 4 3 32 32 H 1.09000 * 110.84575 * 153.86067 * 5 4 3 33 33 H 1.09000 * 109.46855 * 54.28688 * 8 6 2 34 34 H 1.08997 * 109.47037 * 294.29210 * 8 6 2 35 35 H 1.08999 * 109.47651 * 306.19919 * 9 8 6 36 36 H 1.09003 * 109.47207 * 66.19754 * 9 8 6 37 37 H 1.08998 * 109.91753 * 333.50399 * 11 10 9 38 38 H 1.09000 * 109.91847 * 94.80355 * 11 10 9 39 39 H 1.09000 * 110.30783 * 120.14132 * 12 11 10 40 40 H 1.09000 * 110.31023 * 242.30611 * 12 11 10 41 41 H 0.96996 * 119.99254 * 180.02562 * 18 17 15 42 42 H 1.09005 * 110.66962 * 278.15536 * 23 10 9 43 43 H 1.08998 * 110.67226 * 41.28830 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3804 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9181 0.2790 1.9329 6 6 1.9974 -0.7056 1.1818 7 1 2.5673 -1.5800 0.8676 8 6 0.8438 -1.1356 2.0903 9 6 1.3887 -1.9883 3.2378 10 7 0.2696 -2.5234 4.0246 11 6 -0.4707 -3.5518 3.2617 12 6 -1.9529 -3.4308 3.6613 13 6 -2.0058 -2.2571 4.6662 14 1 -1.9781 -2.6258 5.6916 15 6 -3.2339 -1.4143 4.4375 16 1 -3.1320 -0.3741 4.1652 17 6 -4.4878 -1.9709 4.5761 18 7 -4.6118 -3.2377 4.9073 19 14 -6.0100 -0.9259 4.2934 20 1 -6.4055 -1.0039 2.8641 21 1 -7.1200 -1.4285 5.1423 22 1 -5.7148 0.4853 4.6490 23 6 -0.7193 -1.4596 4.3353 24 1 -0.3634 0.4510 0.9234 25 1 -0.3634 0.5742 -0.8523 26 1 -0.3634 -1.0252 -0.0711 27 1 2.2146 1.7039 -1.0182 28 1 1.2888 2.0593 0.4724 29 1 4.1302 0.9283 0.2243 30 1 3.5497 2.2722 1.2635 31 1 2.3782 0.7706 2.7422 32 1 3.8017 -0.2335 2.3133 33 1 0.1253 -1.7185 1.5140 34 1 0.3521 -0.2516 2.4962 35 1 1.9743 -2.8129 2.8314 36 1 2.0219 -1.3740 3.8780 37 1 -0.3587 -3.3731 2.1923 38 1 -0.0972 -4.5436 3.5163 39 1 -2.5636 -3.2076 2.7865 40 1 -2.2931 -4.3511 4.1362 41 1 -5.4939 -3.6293 5.0044 42 1 -0.3971 -0.8745 5.1967 43 1 -0.8774 -0.8165 3.4695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:22 Heat of formation + Delta-G solvation = -10.474948 kcal Electronic energy + Delta-G solvation = -19694.074323 eV Core-core repulsion = 16966.005791 eV Total energy + Delta-G solvation = -2728.068532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87381 -39.45518 -35.49734 -33.64503 -33.07249 -31.14424 -29.94387 -27.51391 -26.58495 -26.28786 -24.16595 -22.15541 -21.50407 -21.27917 -20.17359 -18.45751 -17.29515 -16.93374 -16.56393 -16.33851 -16.08028 -15.21430 -15.05548 -14.90010 -14.48318 -14.29760 -14.01966 -13.57526 -13.45113 -13.04725 -12.85774 -12.75738 -12.59357 -12.37100 -12.29783 -12.25017 -12.03783 -12.00021 -11.86976 -11.61530 -11.54557 -11.33905 -11.10832 -10.79183 -10.51361 -9.37395 -9.08545 -8.14857 -6.25533 1.39221 1.40025 1.50205 2.40763 3.03748 3.15880 3.27522 3.67696 3.75783 3.84272 4.09076 4.15449 4.26043 4.31464 4.33219 4.40238 4.47634 4.53982 4.59274 4.63223 4.65280 4.70742 4.81498 4.89988 4.97251 4.98531 5.03489 5.04553 5.11292 5.20282 5.23313 5.28079 5.34409 5.42504 5.59698 5.80166 5.86214 6.02181 6.03653 6.06554 6.30752 6.39547 6.84523 7.42418 8.94628 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.005549 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.808144 B = 5044.598497 C = 5670.238265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.034 3.966 4 C -0.123 4.123 5 C -0.135 4.135 6 C 0.077 3.923 7 H 0.087 0.913 8 C -0.161 4.161 9 C 0.053 3.947 10 N -0.527 5.527 11 C 0.041 3.959 12 C -0.091 4.091 13 C 0.042 3.958 14 H -0.002 1.002 15 C -0.532 4.532 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.049 3.951 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.804 7.001 -8.915 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.093 4.093 4 C -0.161 4.161 5 C -0.174 4.174 6 C -0.031 4.031 7 H 0.105 0.895 8 C -0.201 4.201 9 C -0.076 4.076 10 N -0.249 5.249 11 C -0.086 4.086 12 C -0.130 4.130 13 C 0.023 3.977 14 H 0.016 0.984 15 C -0.571 4.571 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.078 4.078 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.062 6.378 -8.858 18.601 hybrid contribution -2.035 0.882 0.069 2.219 sum 13.027 7.260 -8.789 17.311 Atomic orbital electron populations 1.22506 0.88200 1.01833 1.00295 1.63792 1.07799 1.15119 1.39671 1.23168 0.96165 0.88846 1.01138 1.22730 0.97016 0.99802 0.96513 1.22924 0.99772 0.96880 0.97811 1.22429 0.94664 0.97673 0.88359 0.89523 1.22731 0.98953 1.00388 0.97999 1.22315 0.93754 0.98292 0.93207 1.64920 1.09001 1.10727 1.40282 1.22860 0.93677 0.96222 0.95886 1.22066 0.93315 0.99184 0.98457 1.19489 0.91871 0.92696 0.93659 0.98421 1.21404 0.91687 0.96600 1.47375 0.92867 1.25750 1.01904 0.96056 0.94760 1.70110 1.23915 1.13220 1.48429 0.85623 0.79127 0.79225 0.78111 1.20079 1.20881 1.19175 1.23212 0.91885 0.93736 0.98986 0.95948 0.90941 0.92070 0.89475 0.94180 0.89909 0.89567 0.92071 0.89171 0.92408 0.92572 0.89929 0.89949 0.93590 0.90804 0.94972 0.94632 0.93037 0.92017 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 8.24 127.69 1.05 1.57 16 2 N -0.54 -12.86 5.44 -886.52 -4.83 -17.69 16 3 C 0.03 0.67 6.73 86.77 0.58 1.25 16 4 C -0.12 -1.97 7.08 32.07 0.23 -1.74 16 5 C -0.14 -2.53 5.77 31.87 0.18 -2.35 16 6 C 0.08 1.76 3.44 45.26 0.16 1.92 16 7 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 8 C -0.16 -4.46 2.27 30.59 0.07 -4.39 16 9 C 0.05 1.50 5.23 86.30 0.45 1.95 16 10 N -0.53 -19.50 5.54 -883.04 -4.89 -24.39 16 11 C 0.04 1.59 6.43 86.45 0.56 2.15 16 12 C -0.09 -4.44 5.51 31.47 0.17 -4.27 16 13 C 0.04 2.18 2.98 -10.33 -0.03 2.15 16 14 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 15 C -0.53 -29.70 8.43 25.60 0.22 -29.49 16 16 H 0.05 2.90 7.78 -2.91 -0.02 2.88 16 17 C 0.01 0.81 5.33 84.66 0.45 1.26 16 18 N -0.92 -54.13 12.44 21.45 0.27 -53.87 16 19 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.05 2.08 5.66 86.65 0.49 2.57 16 24 H 0.02 0.63 6.47 -2.39 -0.02 0.61 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.68 6.80 -2.39 -0.02 1.67 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 0.82 7.81 -2.39 -0.02 0.80 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.26 7.76 -2.39 -0.02 1.24 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.82 4.59 -2.39 -0.01 1.81 16 34 H 0.06 1.74 5.09 -2.39 -0.01 1.73 16 35 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 36 H 0.08 2.12 7.69 -2.39 -0.02 2.11 16 37 H 0.05 1.64 6.15 -2.39 -0.01 1.62 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 39 H 0.03 1.65 7.84 -2.39 -0.02 1.63 16 40 H 0.03 1.85 8.04 -2.39 -0.02 1.83 16 41 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.05 1.90 5.29 -2.39 -0.01 1.89 16 Total: -1.00 -61.00 318.36 -1.88 -62.88 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.96 Total: 14.57 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.58 Total: -27.42 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -9.45 Total: -95.94 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.00 -1.88 -62.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.409 kcal (2) G-P(sol) polarization free energy of solvation -60.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds