Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47903 * 111.00326 * 2 1 4 4 C 1.53993 * 107.05932 * 214.15414 * 3 2 1 5 5 C 1.54601 * 105.13538 * 1.22126 * 4 3 2 6 6 C 1.48528 * 111.00149 * 242.59713 * 2 1 3 7 7 H 1.09000 * 110.66879 * 41.28866 * 6 2 1 8 8 C 1.53003 * 110.66921 * 278.15910 * 6 2 1 9 9 N 1.46905 * 109.46732 * 174.83062 * 8 6 2 10 10 C 1.46844 * 110.99688 * 288.43620 * 9 8 6 11 11 C 1.53036 * 109.51892 * 174.16682 * 10 9 8 12 12 C 1.53118 * 109.28191 * 59.17900 * 11 10 9 13 13 C 1.50702 * 109.52294 * 182.43883 * 12 11 10 14 14 H 1.07993 * 119.99779 * 119.68313 * 13 12 11 15 15 C 1.37873 * 120.00068 * 299.68296 * 13 12 11 16 16 N 1.31514 * 120.00083 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47442 * 90.00030 * 17 15 13 19 19 H 1.48502 * 109.47104 * 210.00123 * 17 15 13 20 20 H 1.48502 * 109.46841 * 329.99831 * 17 15 13 21 21 C 1.53112 * 109.16090 * 302.34473 * 12 11 10 22 22 C 1.46852 * 110.99389 * 164.22852 * 9 8 6 23 23 H 1.09005 * 109.47189 * 63.14837 * 1 2 3 24 24 H 1.08998 * 109.47488 * 183.14649 * 1 2 3 25 25 H 1.09005 * 109.47258 * 303.15145 * 1 2 3 26 26 H 1.09004 * 109.91054 * 333.50917 * 3 2 1 27 27 H 1.08998 * 109.92063 * 94.60203 * 3 2 1 28 28 H 1.08995 * 110.30773 * 120.13430 * 4 3 2 29 29 H 1.08996 * 110.31059 * 242.30898 * 4 3 2 30 30 H 1.09009 * 110.71881 * 140.31775 * 5 4 3 31 31 H 1.08997 * 110.72325 * 263.59301 * 5 4 3 32 32 H 1.09004 * 109.46845 * 294.82748 * 8 6 2 33 33 H 1.08998 * 109.47157 * 54.82897 * 8 6 2 34 34 H 1.09000 * 109.46543 * 294.17755 * 10 9 8 35 35 H 1.08997 * 109.46665 * 54.15048 * 10 9 8 36 36 H 1.09003 * 109.50431 * 299.23474 * 11 10 9 37 37 H 1.09008 * 109.50266 * 179.11770 * 11 10 9 38 38 H 1.09006 * 109.57424 * 62.28127 * 12 11 10 39 39 H 0.97004 * 120.00179 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.50355 * 297.71554 * 21 12 11 41 41 H 1.08996 * 109.53570 * 177.61511 * 21 12 11 42 42 H 1.08998 * 109.46349 * 305.85215 * 22 9 8 43 43 H 1.08999 * 109.46410 * 65.83461 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4491 -0.0931 -1.3152 6 6 2.0013 -0.6382 -1.2310 7 1 1.4237 -0.3325 -2.1034 8 6 2.0051 -2.1618 -1.0911 9 7 2.4181 -2.7692 -2.3633 10 6 1.3662 -2.6308 -3.3785 11 6 1.8842 -3.1421 -4.7246 12 6 2.2936 -4.6108 -4.5840 13 6 2.8605 -5.1030 -5.8908 14 1 3.8761 -5.4674 -5.9357 15 6 2.0824 -5.0880 -7.0289 16 7 2.5769 -5.5180 -8.1692 17 14 0.3259 -4.4571 -6.9514 18 1 0.3119 -2.9971 -7.2225 19 1 -0.4970 -5.1576 -7.9699 20 1 -0.2335 -4.7150 -5.6002 21 6 3.3549 -4.7339 -3.4872 22 6 2.7943 -4.1765 -2.1768 23 1 -0.3634 0.4642 -0.9169 24 1 -0.3634 -1.0261 0.0564 25 1 -0.3634 0.5620 0.8604 26 1 1.2758 2.0561 -0.4572 27 1 2.2089 1.6980 1.0215 28 1 3.2137 2.0427 -1.6766 29 1 4.1470 1.6453 -0.2023 30 1 3.8123 -0.1201 -2.3427 31 1 4.1115 -0.6541 -0.6561 32 1 2.7031 -2.4527 -0.3060 33 1 1.0036 -2.5055 -0.8325 34 1 0.4944 -3.2130 -3.0800 35 1 1.0872 -1.5812 -3.4716 36 1 2.7477 -2.5513 -5.0305 37 1 1.0980 -3.0537 -5.4745 38 1 1.4224 -5.2088 -4.3166 39 1 2.0297 -5.5071 -8.9700 40 1 4.2415 -4.1681 -3.7736 41 1 3.6201 -5.7825 -3.3527 42 1 3.5525 -4.2495 -1.3972 43 1 1.9158 -4.7515 -1.8841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = 4.009325 kcal Electronic energy + Delta-G solvation = -19662.855397 eV Core-core repulsion = 16935.414950 eV Total energy + Delta-G solvation = -2727.440447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48310 -38.01410 -34.09997 -32.20906 -31.82486 -30.26358 -29.49962 -26.28424 -25.61454 -23.68432 -22.60206 -21.44214 -20.87468 -19.81587 -18.78166 -16.67233 -16.38113 -15.59598 -15.37808 -14.60267 -14.49677 -13.92787 -13.84425 -13.70690 -13.38025 -12.96107 -12.80483 -12.38974 -12.34504 -12.08102 -11.76167 -11.57686 -11.29903 -11.25917 -11.13730 -10.93408 -10.62736 -10.56240 -10.49598 -10.04482 -9.87259 -9.58246 -9.03666 -8.90730 -8.57158 -8.47820 -7.88961 -6.03742 -4.01679 3.27705 3.38065 3.40304 3.71585 4.42861 4.44205 4.63103 4.67859 4.89654 5.05279 5.21296 5.27455 5.30197 5.39751 5.42139 5.54563 5.56387 5.64193 5.71069 5.74507 5.82822 5.85678 5.94311 5.99791 6.04083 6.15353 6.16150 6.20407 6.25337 6.39775 6.48326 6.76795 6.78987 6.88404 6.89221 6.99175 7.26268 7.47777 7.57096 7.68218 7.82754 8.57679 9.01321 9.59586 11.09895 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.005297 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.379397 B = 5284.597602 C = 5501.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.105 4.105 6 C 0.069 3.931 7 H 0.055 0.945 8 C 0.072 3.928 9 N -0.532 5.532 10 C 0.055 3.945 11 C -0.115 4.115 12 C 0.013 3.987 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.268 1.268 21 C -0.096 4.096 22 C 0.059 3.941 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 12.135 16.238 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.090 4.090 4 C -0.173 4.173 5 C -0.143 4.143 6 C -0.039 4.039 7 H 0.073 0.927 8 C -0.056 4.056 9 N -0.257 5.257 10 C -0.073 4.073 11 C -0.153 4.153 12 C -0.006 4.006 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.134 4.134 22 C -0.068 4.068 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.004 12.066 16.354 20.422 hybrid contribution -2.172 0.445 -0.573 2.290 sum -4.176 12.511 15.782 20.568 Atomic orbital electron populations 1.22511 0.88172 1.02265 1.00314 1.64580 1.07797 1.14676 1.37565 1.22821 0.96057 0.89686 1.00450 1.22443 0.97348 0.98124 0.99396 1.22378 0.95782 0.93978 1.02135 1.22785 0.95955 0.94678 0.90501 0.92683 1.21884 0.99002 0.92674 0.92060 1.61816 1.40060 1.16910 1.06894 1.22217 0.91902 0.99381 0.93756 1.22007 1.00202 1.00033 0.93049 1.19182 0.94737 0.91417 0.95273 1.21075 1.00893 1.41535 0.91149 0.90852 1.25019 0.97931 0.94911 0.95412 1.69904 1.36951 1.47655 0.99714 0.86858 0.85581 0.78387 0.77445 1.20651 1.22612 1.19290 1.21490 0.99633 0.99280 0.92949 1.22171 0.98538 0.86925 0.99202 0.95513 0.91308 0.91567 0.94097 0.90575 0.91692 0.91141 0.90283 0.90828 0.90476 0.95388 0.95869 0.92258 0.91277 0.93566 0.96131 0.92777 0.91779 0.92410 0.91779 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.28 60.06 0.56 0.72 16 2 N -0.52 -6.05 5.24 -230.84 -1.21 -7.26 16 3 C 0.04 0.38 6.70 -2.75 -0.02 0.36 16 4 C -0.13 -1.33 6.93 -25.37 -0.18 -1.51 16 5 C -0.10 -1.25 6.42 -24.87 -0.16 -1.40 16 6 C 0.07 0.88 2.34 -65.79 -0.15 0.73 16 7 H 0.06 0.77 6.25 -51.93 -0.32 0.44 16 8 C 0.07 1.01 4.67 -3.82 -0.02 0.99 16 9 N -0.53 -8.74 4.53 -234.66 -1.06 -9.81 16 10 C 0.06 1.00 5.31 -3.84 -0.02 0.98 16 11 C -0.12 -2.51 4.84 -26.65 -0.13 -2.64 16 12 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 13 C -0.51 -14.36 9.14 -34.44 -0.31 -14.67 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 17 Si 0.89 22.23 24.36 -169.99 -4.14 18.09 16 18 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 19 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 21 C -0.10 -1.91 5.32 -26.65 -0.14 -2.06 16 22 C 0.06 1.00 5.44 -3.83 -0.02 0.97 16 23 H 0.03 0.27 7.99 -51.93 -0.41 -0.14 16 24 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.39 7.77 -51.93 -0.40 -0.02 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 32 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 33 H 0.03 0.40 7.31 -51.93 -0.38 0.02 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.05 1.06 3.38 -51.92 -0.18 0.89 16 38 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -29.73 317.30 -9.56 -39.29 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.84 Total: -2.46 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.85 Total: -15.50 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.50 Total: -44.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.73 -9.56 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.296 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds