Wall clock time and date at job start Mon Mar 30 2020 03:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47903 * 111.00326 * 2 1 4 4 C 1.53993 * 107.05932 * 214.15414 * 3 2 1 5 5 C 1.54601 * 105.13538 * 1.22126 * 4 3 2 6 6 C 1.48528 * 111.00149 * 242.59713 * 2 1 3 7 7 H 1.09000 * 110.66879 * 41.28866 * 6 2 1 8 8 C 1.53003 * 110.66921 * 278.15910 * 6 2 1 9 9 N 1.46905 * 109.46732 * 174.83062 * 8 6 2 10 10 C 1.46844 * 110.99688 * 288.43620 * 9 8 6 11 11 C 1.53036 * 109.51892 * 174.16682 * 10 9 8 12 12 C 1.53118 * 109.28191 * 59.17900 * 11 10 9 13 13 C 1.50702 * 109.52294 * 182.43883 * 12 11 10 14 14 H 1.07993 * 119.99779 * 119.68313 * 13 12 11 15 15 C 1.37873 * 120.00068 * 299.68296 * 13 12 11 16 16 N 1.31514 * 120.00083 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00225 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47442 * 90.00030 * 17 15 13 19 19 H 1.48502 * 109.47104 * 210.00123 * 17 15 13 20 20 H 1.48502 * 109.46841 * 329.99831 * 17 15 13 21 21 C 1.53112 * 109.16090 * 302.34473 * 12 11 10 22 22 C 1.46852 * 110.99389 * 164.22852 * 9 8 6 23 23 H 1.09005 * 109.47189 * 63.14837 * 1 2 3 24 24 H 1.08998 * 109.47488 * 183.14649 * 1 2 3 25 25 H 1.09005 * 109.47258 * 303.15145 * 1 2 3 26 26 H 1.09004 * 109.91054 * 333.50917 * 3 2 1 27 27 H 1.08998 * 109.92063 * 94.60203 * 3 2 1 28 28 H 1.08995 * 110.30773 * 120.13430 * 4 3 2 29 29 H 1.08996 * 110.31059 * 242.30898 * 4 3 2 30 30 H 1.09009 * 110.71881 * 140.31775 * 5 4 3 31 31 H 1.08997 * 110.72325 * 263.59301 * 5 4 3 32 32 H 1.09004 * 109.46845 * 294.82748 * 8 6 2 33 33 H 1.08998 * 109.47157 * 54.82897 * 8 6 2 34 34 H 1.09000 * 109.46543 * 294.17755 * 10 9 8 35 35 H 1.08997 * 109.46665 * 54.15048 * 10 9 8 36 36 H 1.09003 * 109.50431 * 299.23474 * 11 10 9 37 37 H 1.09008 * 109.50266 * 179.11770 * 11 10 9 38 38 H 1.09006 * 109.57424 * 62.28127 * 12 11 10 39 39 H 0.97004 * 120.00179 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.50355 * 297.71554 * 21 12 11 41 41 H 1.08996 * 109.53570 * 177.61511 * 21 12 11 42 42 H 1.08998 * 109.46349 * 305.85215 * 22 9 8 43 43 H 1.08999 * 109.46410 * 65.83461 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4491 -0.0931 -1.3152 6 6 2.0013 -0.6382 -1.2310 7 1 1.4237 -0.3325 -2.1034 8 6 2.0051 -2.1618 -1.0911 9 7 2.4181 -2.7692 -2.3633 10 6 1.3662 -2.6308 -3.3785 11 6 1.8842 -3.1421 -4.7246 12 6 2.2936 -4.6108 -4.5840 13 6 2.8605 -5.1030 -5.8908 14 1 3.8761 -5.4674 -5.9357 15 6 2.0824 -5.0880 -7.0289 16 7 2.5769 -5.5180 -8.1692 17 14 0.3259 -4.4571 -6.9514 18 1 0.3119 -2.9971 -7.2225 19 1 -0.4970 -5.1576 -7.9699 20 1 -0.2335 -4.7150 -5.6002 21 6 3.3549 -4.7339 -3.4872 22 6 2.7943 -4.1765 -2.1768 23 1 -0.3634 0.4642 -0.9169 24 1 -0.3634 -1.0261 0.0564 25 1 -0.3634 0.5620 0.8604 26 1 1.2758 2.0561 -0.4572 27 1 2.2089 1.6980 1.0215 28 1 3.2137 2.0427 -1.6766 29 1 4.1470 1.6453 -0.2023 30 1 3.8123 -0.1201 -2.3427 31 1 4.1115 -0.6541 -0.6561 32 1 2.7031 -2.4527 -0.3060 33 1 1.0036 -2.5055 -0.8325 34 1 0.4944 -3.2130 -3.0800 35 1 1.0872 -1.5812 -3.4716 36 1 2.7477 -2.5513 -5.0305 37 1 1.0980 -3.0537 -5.4745 38 1 1.4224 -5.2088 -4.3166 39 1 2.0297 -5.5071 -8.9700 40 1 4.2415 -4.1681 -3.7736 41 1 3.6201 -5.7825 -3.3527 42 1 3.5525 -4.2495 -1.3972 43 1 1.9158 -4.7515 -1.8841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:30 Heat of formation + Delta-G solvation = -16.632485 kcal Electronic energy + Delta-G solvation = -19663.750493 eV Core-core repulsion = 16935.414950 eV Total energy + Delta-G solvation = -2728.335543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56478 -39.30846 -35.80542 -33.79057 -33.00967 -31.79931 -30.74407 -27.84892 -26.52083 -25.05828 -24.14603 -22.99714 -21.71096 -20.86378 -20.43780 -18.83020 -17.54953 -16.79227 -16.44890 -16.06744 -15.80522 -15.30151 -15.00278 -14.95639 -14.81481 -14.50652 -14.17316 -14.05399 -13.44528 -13.25729 -13.21921 -12.84408 -12.71804 -12.38095 -12.21847 -12.13075 -12.09196 -11.91556 -11.69675 -11.67644 -11.45760 -11.28613 -10.97080 -10.78652 -10.61342 -9.44540 -9.16741 -8.29820 -6.32479 1.27610 1.32789 1.43362 2.31385 2.69758 3.05563 3.34374 3.71573 3.82645 3.99791 4.09429 4.15633 4.22212 4.24974 4.35090 4.42627 4.51310 4.53557 4.55170 4.63191 4.70154 4.77653 4.78648 4.81844 4.92997 4.95302 4.96222 5.02073 5.07352 5.12775 5.20715 5.25580 5.31139 5.36002 5.53764 5.67716 5.77813 5.92687 6.06506 6.18680 6.29836 6.33658 6.74711 7.32664 8.87457 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.005297 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.379397 B = 5284.597602 C = 5501.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.529 5.529 3 C 0.037 3.963 4 C -0.131 4.131 5 C -0.105 4.105 6 C 0.071 3.929 7 H 0.043 0.957 8 C 0.079 3.921 9 N -0.537 5.537 10 C 0.065 3.935 11 C -0.112 4.112 12 C 0.011 3.989 13 C -0.515 4.515 14 H 0.032 0.968 15 C 0.011 3.989 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.250 1.250 21 C -0.092 4.092 22 C 0.067 3.933 23 H 0.025 0.975 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.016 0.984 39 H 0.265 0.735 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 13.853 18.690 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.091 4.091 4 C -0.169 4.169 5 C -0.144 4.144 6 C -0.038 4.038 7 H 0.061 0.939 8 C -0.049 4.049 9 N -0.263 5.263 10 C -0.063 4.063 11 C -0.150 4.150 12 C -0.008 4.008 13 C -0.553 4.553 14 H 0.051 0.949 15 C -0.186 4.186 16 N -0.593 5.593 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.227 1.227 20 H -0.174 1.174 21 C -0.130 4.130 22 C -0.060 4.060 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.378 13.797 18.838 23.594 hybrid contribution -1.628 -0.129 -1.331 2.107 sum -5.006 13.668 17.507 22.768 Atomic orbital electron populations 1.22546 0.87431 1.02367 1.00942 1.64580 1.08587 1.15624 1.36573 1.22890 0.96016 0.88925 1.01226 1.22433 0.97949 0.96751 0.99744 1.22345 0.95226 0.95436 1.01364 1.22690 0.96359 0.93990 0.90722 0.93874 1.21875 0.99187 0.93262 0.90624 1.61770 1.39764 1.16725 1.08014 1.22052 0.92024 1.00247 0.91997 1.21852 0.99464 0.98382 0.95279 1.19155 0.95280 0.92451 0.93871 1.21418 0.99331 1.40953 0.93647 0.94926 1.25878 1.02595 0.95244 0.94879 1.70056 1.38928 1.49627 1.00672 0.85828 0.79987 0.78343 0.78170 1.19221 1.22659 1.17415 1.21390 0.98253 0.99493 0.93824 1.22072 0.99320 0.87080 0.97562 0.95681 0.91616 0.90028 0.93558 0.89382 0.91346 0.89866 0.91666 0.90973 0.89654 0.95199 0.95644 0.90478 0.92522 0.94607 0.96610 0.92646 0.92962 0.92527 0.89141 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.28 127.69 1.18 1.46 16 2 N -0.53 -10.71 5.24 -884.25 -4.64 -15.34 16 3 C 0.04 0.63 6.70 86.45 0.58 1.20 16 4 C -0.13 -2.23 6.93 31.48 0.22 -2.02 16 5 C -0.11 -2.29 6.42 31.80 0.20 -2.08 16 6 C 0.07 1.63 2.34 45.26 0.11 1.74 16 7 H 0.04 1.10 6.25 -2.39 -0.01 1.09 16 8 C 0.08 1.96 4.67 86.30 0.40 2.36 16 9 N -0.54 -16.39 4.53 -896.34 -4.06 -20.44 16 10 C 0.06 2.18 5.31 86.33 0.46 2.64 16 11 C -0.11 -4.76 4.84 30.65 0.15 -4.61 16 12 C 0.01 0.53 1.75 -11.46 -0.02 0.51 16 13 C -0.52 -29.99 9.14 25.60 0.23 -29.75 16 14 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 15 C 0.01 0.62 5.45 84.65 0.46 1.09 16 16 N -0.95 -60.67 13.96 21.45 0.30 -60.38 16 17 Si 0.95 45.92 24.36 68.60 1.67 47.59 16 18 H -0.27 -12.23 6.89 99.48 0.69 -11.54 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 21 C -0.09 -3.63 5.32 30.65 0.16 -3.46 16 22 C 0.07 2.10 5.44 86.33 0.47 2.57 16 23 H 0.02 0.45 7.99 -2.38 -0.02 0.43 16 24 H 0.07 1.20 7.44 -2.39 -0.02 1.18 16 25 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.05 0.74 7.77 -2.39 -0.02 0.72 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 32 H 0.09 2.02 7.73 -2.39 -0.02 2.00 16 33 H 0.03 0.75 7.31 -2.39 -0.02 0.73 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 2.35 6.40 -2.39 -0.02 2.33 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.04 1.59 3.38 -2.38 -0.01 1.58 16 38 H 0.02 0.76 7.19 -2.38 -0.02 0.74 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.09 2.39 7.96 -2.39 -0.02 2.37 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -64.87 317.30 -1.25 -66.11 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.87 Total: 10.82 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.61 Total: -28.35 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -8.40 Total: -96.16 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -64.87 -1.25 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.480 kcal (2) G-P(sol) polarization free energy of solvation -64.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds