Wall clock time and date at job start Mon Mar 30 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46958 * 110.99614 * 2 1 4 4 C 1.53055 * 109.36144 * 176.80776 * 3 2 1 5 5 N 1.46955 * 109.36065 * 58.40578 * 4 3 2 6 6 C 1.46903 * 110.99991 * 176.81039 * 5 4 3 7 7 C 1.50697 * 109.47294 * 183.79863 * 6 5 4 8 8 H 1.07995 * 119.99933 * 234.69532 * 7 6 5 9 9 C 1.37875 * 120.00058 * 54.69898 * 7 6 5 10 10 N 1.31516 * 119.99933 * 4.87146 * 9 7 6 11 11 Si 1.86801 * 119.99918 * 184.87297 * 9 7 6 12 12 H 1.48499 * 109.47233 * 89.99842 * 11 9 7 13 13 H 1.48502 * 109.46797 * 209.99543 * 11 9 7 14 14 H 1.48501 * 109.47093 * 329.99727 * 11 9 7 15 15 C 1.52999 * 109.47292 * 63.79437 * 6 5 4 16 16 C 1.52994 * 109.47494 * 180.02562 * 15 6 5 17 17 C 1.53000 * 109.47106 * 60.00160 * 16 15 6 18 18 C 1.53001 * 109.47296 * 300.00042 * 17 16 15 19 19 C 1.53004 * 109.47071 * 59.99935 * 18 17 16 20 20 C 1.46958 * 110.88346 * 300.67530 * 5 4 3 21 21 C 1.46955 * 110.99991 * 236.20356 * 2 1 3 22 22 H 1.09002 * 109.46644 * 183.79470 * 1 2 3 23 23 H 1.08998 * 109.47332 * 303.79674 * 1 2 3 24 24 H 1.09003 * 109.47009 * 63.80091 * 1 2 3 25 25 H 1.08999 * 109.49176 * 296.77802 * 3 2 1 26 26 H 1.09002 * 109.49150 * 56.84690 * 3 2 1 27 27 H 1.08995 * 109.49378 * 298.43623 * 4 3 2 28 28 H 1.08997 * 109.50448 * 178.38246 * 4 3 2 29 29 H 0.97005 * 119.99586 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.47110 * 300.00785 * 15 6 5 31 31 H 1.09004 * 109.46511 * 60.00175 * 15 6 5 32 32 H 1.09002 * 109.47394 * 300.00380 * 16 15 6 33 33 H 1.09000 * 109.47363 * 180.02562 * 16 15 6 34 34 H 1.09004 * 109.47108 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47073 * 60.00314 * 17 16 15 36 36 H 1.08999 * 109.47281 * 300.00144 * 18 17 16 37 37 H 1.09001 * 109.47237 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47443 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.46897 * 59.99974 * 19 18 17 40 40 H 1.09007 * 109.48648 * 299.35960 * 20 5 4 41 41 H 1.08992 * 109.51130 * 179.30297 * 20 5 4 42 42 H 1.08994 * 109.49102 * 303.15385 * 21 2 1 43 43 H 1.08993 * 109.49282 * 63.22266 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0215 -0.1443 -2.2901 8 1 6.7111 -0.9698 -2.1934 9 6 5.6007 0.2597 -3.5394 10 7 4.8377 1.3236 -3.6642 11 14 6.1145 -0.7042 -5.0549 12 1 5.1105 -1.7627 -5.3322 13 1 6.2008 0.2134 -6.2193 14 1 7.4404 -1.3294 -4.8179 15 6 6.0291 -0.1552 0.1895 16 6 7.5591 -0.1546 0.1899 17 6 8.0686 1.2880 0.1902 18 6 7.5586 2.0093 -1.0590 19 6 6.0286 2.0088 -1.0594 20 6 3.5235 -0.8060 -1.0598 21 6 1.9957 -0.7631 -1.1401 22 1 -0.3633 -1.0255 0.0680 23 1 -0.3634 0.5716 0.8540 24 1 -0.3633 0.4537 -0.9221 25 1 1.6937 1.8774 -0.9173 26 1 1.6013 1.9129 0.8603 27 1 3.8253 0.8480 1.0107 28 1 3.9180 2.3448 0.0516 29 1 4.5415 1.6075 -4.5431 30 1 5.6657 0.3586 1.0795 31 1 5.6658 -1.1829 0.1895 32 1 7.9229 -0.6682 -0.7001 33 1 7.9224 -0.6688 1.0797 34 1 9.1586 1.2884 0.1900 35 1 7.7049 1.8016 1.0802 36 1 7.9223 1.4958 -1.9490 37 1 7.9212 3.0372 -1.0585 38 1 5.6652 2.5222 -1.9495 39 1 5.6649 2.5223 -0.1694 40 1 3.8254 -1.3114 -0.1424 41 1 3.9178 -1.3472 -1.9198 42 1 1.6014 -1.7788 -1.1111 43 1 1.6939 -0.2820 -2.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:52 Heat of formation + Delta-G solvation = 9.765835 kcal Electronic energy + Delta-G solvation = -20896.641774 eV Core-core repulsion = 18169.450948 eV Total energy + Delta-G solvation = -2727.190826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.10676 -37.10942 -33.85561 -32.17601 -30.29195 -29.43979 -29.05694 -26.28232 -24.98686 -22.98046 -22.71964 -21.27982 -20.41555 -19.13697 -18.06409 -15.92864 -15.26172 -14.68117 -14.48058 -14.20498 -14.16153 -13.76843 -13.23898 -13.21113 -13.07260 -12.60480 -12.09404 -11.89048 -11.62257 -11.49330 -11.22530 -11.04314 -10.83756 -10.75087 -10.60051 -10.42598 -10.24886 -10.19324 -9.86121 -9.72126 -9.53744 -9.06788 -8.95057 -8.57049 -8.21605 -7.86134 -6.62137 -5.78443 -3.91063 3.33888 3.41976 3.44785 4.47615 4.50736 5.12064 5.47791 5.52490 5.61625 5.74094 5.79999 5.86030 5.90153 5.91756 6.04697 6.07653 6.17252 6.23310 6.34716 6.39884 6.47335 6.51481 6.55321 6.60362 6.68876 6.74386 6.79964 6.83614 6.95446 7.03745 7.13531 7.19304 7.26410 7.48803 7.52243 7.53857 7.64107 7.90510 8.05688 8.37602 8.68225 8.81800 9.18782 9.73390 11.20746 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.010423 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.026683 B = 2685.840965 C = 3610.874343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.061 3.939 4 C 0.051 3.949 5 N -0.488 5.488 6 C 0.248 3.752 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.088 3.912 10 N -0.842 5.842 11 Si 0.869 3.131 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.103 4.103 19 C -0.096 4.096 20 C 0.074 3.926 21 C 0.058 3.942 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.020 0.980 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.252 0.748 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.015 0.985 40 H 0.018 0.982 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -0.402 5.985 6.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.067 4.067 4 C -0.078 4.078 5 N -0.211 5.211 6 C 0.161 3.839 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.118 4.118 10 N -0.477 5.477 11 Si 0.697 3.303 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.178 4.178 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.054 4.054 21 C -0.070 4.070 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.903 -0.260 5.833 6.521 hybrid contribution 0.103 -0.559 -0.854 1.026 sum -2.800 -0.819 4.979 5.771 Atomic orbital electron populations 1.22299 0.88758 1.01295 0.99820 1.62219 1.06493 1.14603 1.43751 1.22144 0.96403 0.88538 0.99587 1.22161 0.92617 0.99468 0.93575 1.62533 1.09906 1.11039 1.37609 1.18565 0.82275 0.92079 0.91022 1.20802 1.27860 1.16933 0.89788 0.92768 1.24847 0.94579 0.94441 0.97934 1.70020 1.33171 1.22342 1.22117 0.86991 0.78927 0.80357 0.83975 1.20949 1.21569 1.20190 1.22196 0.95381 1.00245 0.99975 1.21370 0.96535 0.96143 1.00131 1.21477 0.98282 0.96641 0.98478 1.21388 0.97730 0.97295 0.97722 1.21530 0.93149 0.98471 1.00304 1.21855 0.91174 0.92248 1.00146 1.22228 0.97013 0.96536 0.91188 0.92067 0.92144 0.96127 0.94342 0.92123 0.96124 0.91076 0.93752 0.94785 0.93460 0.91243 0.94893 0.93964 0.93851 0.90960 0.94902 0.88945 0.96646 0.96416 0.89625 0.92067 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.60 60.07 0.58 0.96 16 2 N -0.55 -9.60 4.97 -242.75 -1.21 -10.80 16 3 C 0.06 1.11 5.62 -3.76 -0.02 1.09 16 4 C 0.05 1.02 4.83 -3.77 -0.02 1.00 16 5 N -0.49 -10.94 3.64 -220.15 -0.80 -11.75 16 6 C 0.25 5.63 0.07 -132.75 -0.01 5.62 16 7 C -0.52 -12.87 4.77 -34.44 -0.16 -13.03 16 8 H 0.05 1.39 6.53 -52.49 -0.34 1.05 16 9 C 0.09 2.27 5.20 -17.82 -0.09 2.17 16 10 N -0.84 -22.48 10.90 55.43 0.60 -21.87 16 11 Si 0.87 20.38 29.54 -169.99 -5.02 15.36 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.14 -2.89 4.00 -26.73 -0.11 -3.00 16 16 C -0.10 -1.99 5.70 -26.73 -0.15 -2.14 16 17 C -0.11 -2.03 5.92 -26.73 -0.16 -2.19 16 18 C -0.10 -2.11 5.70 -26.73 -0.15 -2.27 16 19 C -0.10 -2.17 4.22 -26.72 -0.11 -2.28 16 20 C 0.07 1.59 4.90 -3.76 -0.02 1.57 16 21 C 0.06 1.10 5.62 -3.77 -0.02 1.08 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.02 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.07 1.45 6.06 -51.93 -0.31 1.13 16 29 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.03 0.69 6.56 -51.93 -0.34 0.35 16 31 H 0.05 1.01 6.48 -51.93 -0.34 0.67 16 32 H 0.07 1.42 6.52 -51.93 -0.34 1.08 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.62 7.22 -51.93 -0.37 1.24 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.36 6.32 -51.93 -0.33 2.04 16 39 H 0.01 0.33 6.27 -51.93 -0.33 0.00 16 40 H 0.02 0.38 6.48 -51.92 -0.34 0.05 16 41 H 0.09 2.00 6.95 -51.93 -0.36 1.64 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -25.95 306.32 -9.78 -35.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.52 Total: 0.13 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.45 Total: -11.41 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.40 Total: -44.42 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.95 -9.78 -35.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.500 kcal (2) G-P(sol) polarization free energy of solvation -25.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds