Wall clock time and date at job start Mon Mar 30 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46958 * 110.99614 * 2 1 4 4 C 1.53055 * 109.36144 * 176.80776 * 3 2 1 5 5 N 1.46955 * 109.36065 * 58.40578 * 4 3 2 6 6 C 1.46903 * 110.99991 * 176.81039 * 5 4 3 7 7 C 1.50697 * 109.47294 * 183.79863 * 6 5 4 8 8 H 1.07995 * 119.99933 * 234.69532 * 7 6 5 9 9 C 1.37875 * 120.00058 * 54.69898 * 7 6 5 10 10 N 1.31516 * 119.99933 * 4.87146 * 9 7 6 11 11 Si 1.86801 * 119.99918 * 184.87297 * 9 7 6 12 12 H 1.48499 * 109.47233 * 89.99842 * 11 9 7 13 13 H 1.48502 * 109.46797 * 209.99543 * 11 9 7 14 14 H 1.48501 * 109.47093 * 329.99727 * 11 9 7 15 15 C 1.52999 * 109.47292 * 63.79437 * 6 5 4 16 16 C 1.52994 * 109.47494 * 180.02562 * 15 6 5 17 17 C 1.53000 * 109.47106 * 60.00160 * 16 15 6 18 18 C 1.53001 * 109.47296 * 300.00042 * 17 16 15 19 19 C 1.53004 * 109.47071 * 59.99935 * 18 17 16 20 20 C 1.46958 * 110.88346 * 300.67530 * 5 4 3 21 21 C 1.46955 * 110.99991 * 236.20356 * 2 1 3 22 22 H 1.09002 * 109.46644 * 183.79470 * 1 2 3 23 23 H 1.08998 * 109.47332 * 303.79674 * 1 2 3 24 24 H 1.09003 * 109.47009 * 63.80091 * 1 2 3 25 25 H 1.08999 * 109.49176 * 296.77802 * 3 2 1 26 26 H 1.09002 * 109.49150 * 56.84690 * 3 2 1 27 27 H 1.08995 * 109.49378 * 298.43623 * 4 3 2 28 28 H 1.08997 * 109.50448 * 178.38246 * 4 3 2 29 29 H 0.97005 * 119.99586 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.47110 * 300.00785 * 15 6 5 31 31 H 1.09004 * 109.46511 * 60.00175 * 15 6 5 32 32 H 1.09002 * 109.47394 * 300.00380 * 16 15 6 33 33 H 1.09000 * 109.47363 * 180.02562 * 16 15 6 34 34 H 1.09004 * 109.47108 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47073 * 60.00314 * 17 16 15 36 36 H 1.08999 * 109.47281 * 300.00144 * 18 17 16 37 37 H 1.09001 * 109.47237 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47443 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.46897 * 59.99974 * 19 18 17 40 40 H 1.09007 * 109.48648 * 299.35960 * 20 5 4 41 41 H 1.08992 * 109.51130 * 179.30297 * 20 5 4 42 42 H 1.08994 * 109.49102 * 303.15385 * 21 2 1 43 43 H 1.08993 * 109.49282 * 63.22266 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0215 -0.1443 -2.2901 8 1 6.7111 -0.9698 -2.1934 9 6 5.6007 0.2597 -3.5394 10 7 4.8377 1.3236 -3.6642 11 14 6.1145 -0.7042 -5.0549 12 1 5.1105 -1.7627 -5.3322 13 1 6.2008 0.2134 -6.2193 14 1 7.4404 -1.3294 -4.8179 15 6 6.0291 -0.1552 0.1895 16 6 7.5591 -0.1546 0.1899 17 6 8.0686 1.2880 0.1902 18 6 7.5586 2.0093 -1.0590 19 6 6.0286 2.0088 -1.0594 20 6 3.5235 -0.8060 -1.0598 21 6 1.9957 -0.7631 -1.1401 22 1 -0.3633 -1.0255 0.0680 23 1 -0.3634 0.5716 0.8540 24 1 -0.3633 0.4537 -0.9221 25 1 1.6937 1.8774 -0.9173 26 1 1.6013 1.9129 0.8603 27 1 3.8253 0.8480 1.0107 28 1 3.9180 2.3448 0.0516 29 1 4.5415 1.6075 -4.5431 30 1 5.6657 0.3586 1.0795 31 1 5.6658 -1.1829 0.1895 32 1 7.9229 -0.6682 -0.7001 33 1 7.9224 -0.6688 1.0797 34 1 9.1586 1.2884 0.1900 35 1 7.7049 1.8016 1.0802 36 1 7.9223 1.4958 -1.9490 37 1 7.9212 3.0372 -1.0585 38 1 5.6652 2.5222 -1.9495 39 1 5.6649 2.5223 -0.1694 40 1 3.8254 -1.3114 -0.1424 41 1 3.9178 -1.3472 -1.9198 42 1 1.6014 -1.7788 -1.1111 43 1 1.6939 -0.2820 -2.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260068590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:51 Heat of formation + Delta-G solvation = -5.611783 kcal Electronic energy + Delta-G solvation = -20897.308598 eV Core-core repulsion = 18169.450948 eV Total energy + Delta-G solvation = -2727.857649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76290 -38.63621 -35.41969 -34.09525 -31.89868 -31.07551 -30.67569 -27.75742 -26.87352 -24.44586 -24.33388 -22.93067 -22.02342 -20.77412 -19.82107 -17.65868 -16.96352 -16.56087 -15.95388 -15.73673 -15.57224 -15.44341 -14.93846 -14.83075 -14.70250 -14.23754 -13.66828 -13.37401 -13.14290 -13.02293 -12.85489 -12.78525 -12.50703 -12.46150 -12.36018 -12.08799 -11.93870 -11.82159 -11.50376 -11.39731 -11.26073 -10.75746 -10.65568 -10.43130 -10.14522 -9.27736 -8.34743 -7.76077 -5.92610 1.42581 1.47977 1.52485 2.54654 3.09870 3.32804 3.69910 4.13676 4.19072 4.26637 4.29716 4.35242 4.37455 4.54031 4.56431 4.68267 4.73306 4.75457 4.81033 4.86256 4.94035 4.97941 4.99337 5.03796 5.05510 5.11451 5.17808 5.20112 5.30681 5.36393 5.44601 5.58190 5.60016 5.78634 5.82491 5.90847 6.09240 6.19085 6.24019 6.51613 6.82448 7.04469 7.32782 7.73375 9.19748 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.010423 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.026683 B = 2685.840965 C = 3610.874343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.067 3.933 4 C 0.055 3.945 5 N -0.509 5.509 6 C 0.243 3.757 7 C -0.512 4.512 8 H 0.043 0.957 9 C 0.053 3.947 10 N -0.863 5.863 11 Si 0.914 3.086 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.275 1.275 15 C -0.132 4.132 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.101 4.101 19 C -0.091 4.091 20 C 0.081 3.919 21 C 0.067 3.933 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.089 0.911 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.246 0.754 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.017 0.983 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -0.599 7.705 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.061 4.061 4 C -0.074 4.074 5 N -0.232 5.232 6 C 0.155 3.845 7 C -0.551 4.551 8 H 0.061 0.939 9 C -0.151 4.151 10 N -0.499 5.499 11 Si 0.743 3.257 12 H -0.212 1.212 13 H -0.219 1.219 14 H -0.200 1.200 15 C -0.171 4.171 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.129 4.129 20 C -0.048 4.048 21 C -0.061 4.061 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.108 0.892 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.114 -0.468 7.557 8.186 hybrid contribution 0.159 -0.504 -1.364 1.462 sum -2.954 -0.972 6.193 6.930 Atomic orbital electron populations 1.22393 0.86253 1.02804 1.00605 1.62234 1.08732 1.13937 1.42539 1.22093 0.94985 0.89113 0.99905 1.22132 0.94113 0.98592 0.92573 1.62415 1.09847 1.11735 1.39161 1.18559 0.82805 0.92148 0.90977 1.20958 1.27038 1.16202 0.90895 0.93920 1.25283 0.94967 0.95075 0.99745 1.70148 1.34475 1.23410 1.21898 0.86277 0.78454 0.79213 0.81777 1.21193 1.21927 1.20037 1.22082 0.96693 0.99273 0.99069 1.21352 0.95177 0.97051 1.00472 1.21426 0.99720 0.95541 0.97523 1.21331 0.96243 0.98351 0.98021 1.21412 0.94620 0.97966 0.98925 1.21724 0.92884 0.91543 0.98664 1.22091 0.95350 0.97821 0.90874 0.90455 0.90056 0.96378 0.96243 0.89226 0.96063 0.91708 0.94405 0.94196 0.94504 0.93066 0.92336 0.91587 0.92477 0.93482 0.93347 0.92423 0.95775 0.96526 0.92495 0.89915 0.96592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.60 127.69 1.23 1.92 16 2 N -0.55 -18.25 4.97 -921.93 -4.58 -22.83 16 3 C 0.07 2.33 5.62 86.31 0.49 2.81 16 4 C 0.05 2.15 4.83 86.31 0.42 2.57 16 5 N -0.51 -22.96 3.64 -850.41 -3.10 -26.06 16 6 C 0.24 11.08 0.07 2.78 0.00 11.08 16 7 C -0.51 -26.05 4.77 25.60 0.12 -25.92 16 8 H 0.04 2.23 6.53 -2.91 -0.02 2.21 16 9 C 0.05 2.77 5.20 84.65 0.44 3.21 16 10 N -0.86 -47.39 10.90 21.45 0.23 -47.15 16 11 Si 0.91 42.73 29.54 68.60 2.03 44.75 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 C -0.13 -5.37 4.00 30.59 0.12 -5.25 16 16 C -0.10 -3.75 5.70 30.59 0.17 -3.57 16 17 C -0.10 -3.56 5.92 30.59 0.18 -3.38 16 18 C -0.10 -4.06 5.70 30.60 0.17 -3.89 16 19 C -0.09 -4.09 4.22 30.60 0.13 -3.96 16 20 C 0.08 3.46 4.90 86.31 0.42 3.89 16 21 C 0.07 2.49 5.62 86.31 0.49 2.97 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 24 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 2.58 8.13 -2.39 -0.02 2.56 16 27 H 0.02 0.84 6.56 -2.39 -0.02 0.82 16 28 H 0.06 2.60 6.06 -2.39 -0.01 2.59 16 29 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 30 H 0.04 1.56 6.56 -2.39 -0.02 1.55 16 31 H 0.04 1.55 6.48 -2.38 -0.02 1.53 16 32 H 0.05 2.05 6.52 -2.39 -0.02 2.04 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 2.10 7.22 -2.39 -0.02 2.09 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.06 3.01 6.32 -2.39 -0.02 2.99 16 39 H 0.02 1.01 6.27 -2.39 -0.01 1.00 16 40 H 0.02 0.71 6.48 -2.38 -0.02 0.70 16 41 H 0.06 2.73 6.95 -2.39 -0.02 2.72 16 42 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -55.82 306.32 -0.08 -55.89 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.96 Total: 12.93 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.38 Total: -17.52 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -7.45 Total: -96.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -55.82 -0.08 -55.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.281 kcal (2) G-P(sol) polarization free energy of solvation -55.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds