Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48559 * 111.00066 * 2 1 4 4 C 1.54387 * 104.58955 * 159.04379 * 3 2 1 5 5 C 1.54259 * 105.06271 * 336.15098 * 4 3 2 6 6 H 1.08991 * 110.32316 * 118.89554 * 5 4 3 7 7 C 1.53001 * 110.32029 * 241.00367 * 5 4 3 8 8 N 1.46900 * 109.46739 * 184.99767 * 7 5 4 9 9 C 1.46846 * 111.00167 * 66.05100 * 8 7 5 10 10 C 1.53034 * 109.52405 * 185.83852 * 9 8 7 11 11 C 1.53113 * 109.27714 * 300.81449 * 10 9 8 12 12 C 1.53112 * 109.16246 * 57.65604 * 11 10 9 13 13 C 1.46852 * 110.99698 * 190.25320 * 8 7 5 14 14 H 1.09000 * 109.46463 * 294.17922 * 13 8 7 15 15 C 1.50700 * 109.46242 * 54.14617 * 13 8 7 16 16 H 1.07994 * 119.99989 * 0.02562 * 15 13 8 17 17 C 1.37880 * 120.00159 * 179.97438 * 15 13 8 18 18 N 1.31513 * 119.99849 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00094 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47293 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47208 * 120.00206 * 19 17 15 22 22 H 1.48502 * 109.47137 * 240.00501 * 19 17 15 23 23 C 1.48560 * 111.00239 * 115.42523 * 2 1 3 24 24 H 1.08999 * 109.47164 * 59.86869 * 1 2 3 25 25 H 1.08991 * 109.47486 * 179.87271 * 1 2 3 26 26 H 1.09009 * 109.46450 * 299.87269 * 1 2 3 27 27 H 1.08999 * 110.40971 * 40.26912 * 3 2 1 28 28 H 1.08999 * 110.41180 * 277.82119 * 3 2 1 29 29 H 1.09000 * 110.32138 * 95.04641 * 4 3 2 30 30 H 1.08999 * 110.32243 * 217.24909 * 4 3 2 31 31 H 1.09000 * 109.47205 * 304.99502 * 7 5 4 32 32 H 1.08998 * 109.47175 * 64.99994 * 7 5 4 33 33 H 1.09000 * 109.45781 * 305.85209 * 9 8 7 34 34 H 1.09000 * 109.46752 * 65.82461 * 9 8 7 35 35 H 1.08997 * 109.50722 * 60.75981 * 10 9 8 36 36 H 1.09002 * 109.50485 * 180.83558 * 10 9 8 37 37 H 1.09005 * 109.52377 * 177.56086 * 11 10 9 38 38 H 1.09004 * 109.52431 * 297.75095 * 11 10 9 39 39 H 1.09008 * 109.50520 * 62.28645 * 12 11 10 40 40 H 1.08998 * 109.50722 * 182.40235 * 12 11 10 41 41 H 0.96997 * 120.00187 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.40940 * 82.17346 * 23 2 1 43 43 H 1.08995 * 110.40669 * 319.73353 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2499 0.5344 5 6 3.4434 -0.0542 1.3583 6 1 4.1483 -0.7695 0.9348 7 6 3.7974 0.2393 2.8176 8 7 3.9094 -1.0246 3.5579 9 6 5.0468 -1.8181 3.0753 10 6 5.0462 -3.1845 3.7646 11 6 5.1444 -2.9864 5.2797 12 6 3.9753 -2.1166 5.7497 13 6 4.0068 -0.7811 5.0028 14 1 4.9413 -0.2645 5.2219 15 6 2.8461 0.0707 5.4479 16 1 2.1096 0.3980 4.7291 17 6 2.7238 0.4314 6.7731 18 7 3.6204 0.0324 7.6485 19 14 1.2847 1.4867 7.3249 20 1 0.4235 1.7996 6.1562 21 1 0.4910 0.7494 8.3406 22 1 1.7950 2.7495 7.9165 23 6 2.0015 -0.5954 1.2526 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3634 -1.0276 -0.0023 26 1 -0.3632 0.5119 0.8912 27 1 1.4100 2.0211 0.6603 28 1 2.0079 1.7916 -1.0121 29 1 4.1483 1.1747 -0.2936 30 1 3.6939 2.0993 1.1699 31 1 4.7478 0.7712 2.8610 32 1 3.0161 0.8541 3.2644 33 1 4.9626 -1.9552 1.9973 34 1 5.9764 -1.2967 3.3036 35 1 4.1230 -3.7123 3.5257 36 1 5.8991 -3.7677 3.4173 37 1 5.1007 -3.9552 5.7774 38 1 6.0858 -2.4933 5.5224 39 1 3.0350 -2.6275 5.5420 40 1 4.0633 -1.9365 6.8211 41 1 3.5347 0.2864 8.5807 42 1 2.0079 -1.6833 1.1836 43 1 1.4100 -0.2714 2.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = -1.161144 kcal Electronic energy + Delta-G solvation = -19997.163024 eV Core-core repulsion = 17269.498369 eV Total energy + Delta-G solvation = -2727.664655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.06507 -37.63791 -33.57494 -32.91366 -31.27941 -29.48630 -28.56812 -26.18908 -25.19693 -24.05522 -21.92936 -21.07316 -20.82429 -19.27424 -18.58511 -16.47556 -15.92091 -15.16186 -14.96407 -14.29896 -14.21603 -13.73765 -13.52900 -13.29514 -13.07616 -12.62837 -12.44901 -12.26136 -11.98979 -11.64250 -11.33078 -11.23108 -10.99346 -10.94033 -10.73014 -10.61563 -10.53704 -10.38193 -10.24671 -10.04444 -9.87710 -9.56070 -9.10035 -8.71719 -8.39157 -8.29640 -7.10734 -6.02402 -4.06751 3.26933 3.35296 3.38497 4.28717 4.38673 4.81651 4.95495 5.11994 5.27864 5.32764 5.53282 5.54625 5.61395 5.69955 5.74450 5.77820 5.93612 5.94704 5.96454 6.09419 6.12577 6.24225 6.26337 6.30171 6.40732 6.45769 6.49909 6.56822 6.63724 6.84072 6.87848 6.92478 7.07375 7.15975 7.22544 7.31844 7.61244 7.75681 7.83304 8.24075 8.36291 8.64022 9.00509 9.58040 11.03932 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.008249 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.611365 B = 3393.713637 C = 4586.062214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.524 5.524 3 C 0.032 3.968 4 C -0.121 4.121 5 C -0.088 4.088 6 H 0.073 0.927 7 C 0.070 3.930 8 N -0.531 5.531 9 C 0.056 3.944 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.104 4.104 13 C 0.219 3.781 14 H -0.004 1.004 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.052 3.948 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -0.666 -11.419 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.248 5.248 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.108 4.108 6 H 0.091 0.909 7 C -0.059 4.059 8 N -0.256 5.256 9 C -0.073 4.073 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.142 4.142 13 C 0.113 3.887 14 H 0.014 0.986 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.075 4.075 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.951 -1.227 -11.771 11.873 hybrid contribution -0.293 1.451 1.301 1.971 sum -1.244 0.224 -10.470 10.546 Atomic orbital electron populations 1.22463 0.88674 1.01952 1.00358 1.65405 1.07721 1.15074 1.36600 1.23081 0.95692 0.90476 1.00312 1.22346 0.96010 0.98317 0.99250 1.21965 0.96772 0.96073 0.95947 0.90909 1.22118 1.00143 0.92401 0.91212 1.61983 1.39905 1.16944 1.06784 1.22020 0.92433 0.94659 0.98190 1.21526 1.00470 0.96374 0.96446 1.21684 1.00344 0.99302 0.94700 1.21623 0.94627 0.95012 1.02953 1.19181 0.95794 0.92891 0.80798 0.98599 1.21207 1.09168 1.30443 0.93349 0.91944 1.24925 0.96219 0.96263 0.96730 1.69894 1.34777 1.45670 1.02699 0.86528 0.82601 0.80115 0.78682 1.19859 1.21019 1.21167 1.23037 0.94816 0.99917 0.89756 0.91940 0.91463 0.95320 0.93970 0.90848 0.91575 0.91214 0.96345 0.89360 0.92276 0.96519 0.91945 0.93451 0.93843 0.93500 0.93925 0.88969 0.93049 0.90352 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 60.07 0.57 0.76 16 2 N -0.52 -7.59 5.66 -238.23 -1.35 -8.94 16 3 C 0.03 0.43 6.49 -2.18 -0.01 0.42 16 4 C -0.12 -1.66 6.65 -25.35 -0.17 -1.82 16 5 C -0.09 -1.40 3.02 -89.24 -0.27 -1.67 16 6 H 0.07 1.15 6.21 -51.93 -0.32 0.83 16 7 C 0.07 1.34 3.84 -3.82 -0.01 1.33 16 8 N -0.53 -11.15 4.35 -228.07 -0.99 -12.14 16 9 C 0.06 1.03 5.30 -3.84 -0.02 1.01 16 10 C -0.11 -1.94 6.09 -26.66 -0.16 -2.11 16 11 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 12 C -0.10 -2.47 5.14 -26.65 -0.14 -2.61 16 13 C 0.22 5.44 1.83 -68.87 -0.13 5.31 16 14 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 15 C -0.50 -13.45 7.80 -34.44 -0.27 -13.71 16 16 H 0.06 1.67 6.31 -52.49 -0.33 1.34 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.05 0.84 5.91 -2.18 -0.01 0.83 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.37 7.97 -51.92 -0.41 -0.04 16 27 H 0.04 0.57 7.97 -51.93 -0.41 0.16 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 31 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.09 1.88 5.64 -51.93 -0.29 1.59 16 33 H 0.06 0.98 6.12 -51.93 -0.32 0.66 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.09 2.44 6.09 -51.93 -0.32 2.13 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -27.43 320.78 -10.60 -38.04 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.83 Total: -0.07 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.88 Total: -13.34 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.71 Total: -45.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.43 -10.60 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.876 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds