Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48559 * 111.00066 * 2 1 4 4 C 1.54387 * 104.58955 * 159.04379 * 3 2 1 5 5 C 1.54259 * 105.06271 * 336.15098 * 4 3 2 6 6 H 1.08991 * 110.32316 * 118.89554 * 5 4 3 7 7 C 1.53001 * 110.32029 * 241.00367 * 5 4 3 8 8 N 1.46900 * 109.46739 * 184.99767 * 7 5 4 9 9 C 1.46846 * 111.00167 * 66.05100 * 8 7 5 10 10 C 1.53034 * 109.52405 * 185.83852 * 9 8 7 11 11 C 1.53113 * 109.27714 * 300.81449 * 10 9 8 12 12 C 1.53112 * 109.16246 * 57.65604 * 11 10 9 13 13 C 1.46852 * 110.99698 * 190.25320 * 8 7 5 14 14 H 1.09000 * 109.46463 * 294.17922 * 13 8 7 15 15 C 1.50700 * 109.46242 * 54.14617 * 13 8 7 16 16 H 1.07994 * 119.99989 * 0.02562 * 15 13 8 17 17 C 1.37880 * 120.00159 * 179.97438 * 15 13 8 18 18 N 1.31513 * 119.99849 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00094 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47293 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47208 * 120.00206 * 19 17 15 22 22 H 1.48502 * 109.47137 * 240.00501 * 19 17 15 23 23 C 1.48560 * 111.00239 * 115.42523 * 2 1 3 24 24 H 1.08999 * 109.47164 * 59.86869 * 1 2 3 25 25 H 1.08991 * 109.47486 * 179.87271 * 1 2 3 26 26 H 1.09009 * 109.46450 * 299.87269 * 1 2 3 27 27 H 1.08999 * 110.40971 * 40.26912 * 3 2 1 28 28 H 1.08999 * 110.41180 * 277.82119 * 3 2 1 29 29 H 1.09000 * 110.32138 * 95.04641 * 4 3 2 30 30 H 1.08999 * 110.32243 * 217.24909 * 4 3 2 31 31 H 1.09000 * 109.47205 * 304.99502 * 7 5 4 32 32 H 1.08998 * 109.47175 * 64.99994 * 7 5 4 33 33 H 1.09000 * 109.45781 * 305.85209 * 9 8 7 34 34 H 1.09000 * 109.46752 * 65.82461 * 9 8 7 35 35 H 1.08997 * 109.50722 * 60.75981 * 10 9 8 36 36 H 1.09002 * 109.50485 * 180.83558 * 10 9 8 37 37 H 1.09005 * 109.52377 * 177.56086 * 11 10 9 38 38 H 1.09004 * 109.52431 * 297.75095 * 11 10 9 39 39 H 1.09008 * 109.50520 * 62.28645 * 12 11 10 40 40 H 1.08998 * 109.50722 * 182.40235 * 12 11 10 41 41 H 0.96997 * 120.00187 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.40940 * 82.17346 * 23 2 1 43 43 H 1.08995 * 110.40669 * 319.73353 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2499 0.5344 5 6 3.4434 -0.0542 1.3583 6 1 4.1483 -0.7695 0.9348 7 6 3.7974 0.2393 2.8176 8 7 3.9094 -1.0246 3.5579 9 6 5.0468 -1.8181 3.0753 10 6 5.0462 -3.1845 3.7646 11 6 5.1444 -2.9864 5.2797 12 6 3.9753 -2.1166 5.7497 13 6 4.0068 -0.7811 5.0028 14 1 4.9413 -0.2645 5.2219 15 6 2.8461 0.0707 5.4479 16 1 2.1096 0.3980 4.7291 17 6 2.7238 0.4314 6.7731 18 7 3.6204 0.0324 7.6485 19 14 1.2847 1.4867 7.3249 20 1 0.4235 1.7996 6.1562 21 1 0.4910 0.7494 8.3406 22 1 1.7950 2.7495 7.9165 23 6 2.0015 -0.5954 1.2526 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3634 -1.0276 -0.0023 26 1 -0.3632 0.5119 0.8912 27 1 1.4100 2.0211 0.6603 28 1 2.0079 1.7916 -1.0121 29 1 4.1483 1.1747 -0.2936 30 1 3.6939 2.0993 1.1699 31 1 4.7478 0.7712 2.8610 32 1 3.0161 0.8541 3.2644 33 1 4.9626 -1.9552 1.9973 34 1 5.9764 -1.2967 3.3036 35 1 4.1230 -3.7123 3.5257 36 1 5.8991 -3.7677 3.4173 37 1 5.1007 -3.9552 5.7774 38 1 6.0858 -2.4933 5.5224 39 1 3.0350 -2.6275 5.5420 40 1 4.0633 -1.9365 6.8211 41 1 3.5347 0.2864 8.5807 42 1 2.0079 -1.6833 1.1836 43 1 1.4100 -0.2714 2.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260095970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = -18.624511 kcal Electronic energy + Delta-G solvation = -19997.920293 eV Core-core repulsion = 17269.498369 eV Total energy + Delta-G solvation = -2728.421923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45413 -39.13987 -35.11310 -34.83073 -32.63588 -31.30849 -29.83813 -27.57578 -27.03556 -25.47355 -23.52330 -22.76006 -22.00633 -20.63725 -20.30644 -18.46573 -17.37228 -16.67239 -16.41504 -15.82951 -15.67036 -15.21418 -14.97103 -14.91633 -14.41281 -14.32877 -13.89171 -13.77096 -13.72633 -12.92871 -12.88241 -12.62851 -12.56900 -12.36487 -12.33849 -12.20856 -11.99374 -11.86397 -11.80805 -11.75655 -11.43932 -11.32984 -10.74978 -10.66286 -10.40328 -9.46232 -8.86112 -8.11745 -6.22970 1.36462 1.38783 1.49389 2.39251 3.12731 3.16428 3.33317 3.77151 3.91403 4.04881 4.17610 4.21675 4.31556 4.39600 4.48895 4.57589 4.59519 4.66095 4.69969 4.80379 4.83933 4.87792 4.90844 4.98028 4.99729 5.02313 5.05479 5.13294 5.19029 5.25839 5.30835 5.34353 5.46332 5.48674 5.65596 5.77386 5.83019 5.90126 6.09884 6.30316 6.46506 6.81816 6.93860 7.45692 8.93668 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.008249 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.611365 B = 3393.713637 C = 4586.062214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.526 5.526 3 C 0.033 3.967 4 C -0.117 4.117 5 C -0.080 4.080 6 H 0.082 0.918 7 C 0.076 3.924 8 N -0.534 5.534 9 C 0.053 3.947 10 C -0.104 4.104 11 C -0.118 4.118 12 C -0.098 4.098 13 C 0.226 3.774 14 H -0.046 1.046 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.058 3.942 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.018 0.982 27 H 0.035 0.965 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.011 0.989 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.009 0.991 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 -1.041 -13.557 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.053 4.053 8 N -0.259 5.259 9 C -0.075 4.075 10 C -0.142 4.142 11 C -0.156 4.156 12 C -0.137 4.137 13 C 0.119 3.881 14 H -0.028 1.028 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.070 4.070 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.198 -1.602 -13.930 14.073 hybrid contribution -0.207 1.580 1.949 2.518 sum -1.406 -0.022 -11.981 12.063 Atomic orbital electron populations 1.22532 0.87533 1.02544 1.00928 1.65431 1.08876 1.15704 1.34949 1.23156 0.95025 0.89822 1.01520 1.22354 0.97008 0.96782 0.99439 1.21865 0.96755 0.97677 0.93613 0.89972 1.22050 0.98716 0.91384 0.93114 1.61967 1.41313 1.17875 1.04744 1.22164 0.90941 0.94600 0.99828 1.21514 1.02220 0.96167 0.94257 1.21613 0.97868 0.99193 0.96876 1.21434 0.95960 0.95292 1.01005 1.18955 0.93021 0.92688 0.83476 1.02812 1.21468 1.09572 1.30828 0.93493 0.92571 1.25671 0.98613 0.97485 0.96879 1.70029 1.36296 1.46641 1.02880 0.85571 0.79682 0.78553 0.78223 1.19377 1.20603 1.20716 1.22883 0.94630 0.99760 0.89741 0.89758 0.90973 0.96293 0.94626 0.88451 0.89487 0.91507 0.97110 0.92177 0.89526 0.97301 0.91651 0.89833 0.91817 0.94244 0.95005 0.92170 0.93036 0.90677 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.53 127.69 1.22 1.53 16 2 N -0.53 -14.17 5.66 -907.61 -5.14 -19.30 16 3 C 0.03 0.79 6.49 86.45 0.56 1.35 16 4 C -0.12 -2.98 6.65 31.49 0.21 -2.77 16 5 C -0.08 -2.44 3.02 -9.90 -0.03 -2.47 16 6 H 0.08 2.38 6.21 -2.39 -0.01 2.37 16 7 C 0.08 2.96 3.84 86.30 0.33 3.29 16 8 N -0.53 -22.64 4.35 -875.49 -3.81 -26.45 16 9 C 0.05 1.87 5.30 86.32 0.46 2.33 16 10 C -0.10 -3.42 6.09 30.64 0.19 -3.23 16 11 C -0.12 -4.59 6.00 30.67 0.18 -4.41 16 12 C -0.10 -4.81 5.14 30.65 0.16 -4.65 16 13 C 0.23 11.59 1.83 44.19 0.08 11.67 16 14 H -0.05 -2.67 8.14 -2.39 -0.02 -2.69 16 15 C -0.52 -28.54 7.80 25.60 0.20 -28.34 16 16 H 0.06 3.12 6.31 -2.91 -0.02 3.10 16 17 C 0.01 0.68 5.30 84.66 0.45 1.12 16 18 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16 19 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.06 1.82 5.91 86.45 0.51 2.33 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.02 0.47 7.97 -2.38 -0.02 0.45 16 27 H 0.04 0.91 7.97 -2.39 -0.02 0.89 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 31 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 32 H 0.06 2.67 5.64 -2.39 -0.01 2.65 16 33 H 0.09 2.62 6.12 -2.39 -0.01 2.61 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 3.32 6.09 -2.39 -0.01 3.30 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.02 0.93 7.52 -2.39 -0.02 0.91 16 Total: -1.00 -60.75 320.78 -1.21 -61.96 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.95 Total: 13.02 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.52 Total: -22.25 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -8.70 Total: -98.96 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -60.75 -1.21 -61.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.337 kcal (2) G-P(sol) polarization free energy of solvation -60.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds