Wall clock time and date at job start Mon Mar 30 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48534 * 110.99754 * 2 1 4 4 C 1.54945 * 103.22347 * 200.27755 * 3 2 1 5 5 C 1.54589 * 102.92092 * 37.41110 * 4 3 2 6 6 H 1.09000 * 110.39499 * 97.00112 * 5 4 3 7 7 C 1.52999 * 110.30945 * 219.12650 * 5 4 3 8 8 N 1.46898 * 109.47340 * 187.54099 * 7 5 4 9 9 C 1.46853 * 111.00085 * 52.84477 * 8 7 5 10 10 C 1.53032 * 109.52359 * 174.16246 * 9 8 7 11 11 C 1.53116 * 109.31161 * 59.15959 * 10 9 8 12 12 C 1.53118 * 109.16160 * 302.40419 * 11 10 9 13 13 C 1.46844 * 111.00106 * 288.63646 * 8 7 5 14 14 H 1.09004 * 109.46383 * 65.82305 * 13 8 7 15 15 C 1.50695 * 109.46402 * 305.84589 * 13 8 7 16 16 H 1.08005 * 119.99820 * 359.97438 * 15 13 8 17 17 C 1.37875 * 120.00549 * 180.02562 * 15 13 8 18 18 N 1.31517 * 119.99806 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00329 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47130 * 89.99720 * 19 17 15 21 21 H 1.48498 * 109.46903 * 209.99549 * 19 17 15 22 22 H 1.48505 * 109.47065 * 329.99531 * 19 17 15 23 23 C 1.47894 * 111.00089 * 242.59984 * 2 1 3 24 24 H 1.08997 * 109.47438 * 177.39730 * 1 2 3 25 25 H 1.09000 * 109.47191 * 297.39790 * 1 2 3 26 26 H 1.09003 * 109.47002 * 57.39743 * 1 2 3 27 27 H 1.08996 * 110.66938 * 318.70613 * 3 2 1 28 28 H 1.08995 * 110.67310 * 81.84632 * 3 2 1 29 29 H 1.08997 * 110.72243 * 279.05369 * 4 3 2 30 30 H 1.08998 * 110.72271 * 155.76951 * 4 3 2 31 31 H 1.08996 * 109.47405 * 67.54223 * 7 5 4 32 32 H 1.08998 * 109.46861 * 307.53720 * 7 5 4 33 33 H 1.09001 * 109.46224 * 54.14548 * 9 8 7 34 34 H 1.08999 * 109.45595 * 294.17395 * 9 8 7 35 35 H 1.09007 * 109.50434 * 179.12529 * 10 9 8 36 36 H 1.09004 * 109.50463 * 299.19528 * 10 9 8 37 37 H 1.08999 * 109.52236 * 62.27255 * 11 10 9 38 38 H 1.09010 * 109.52411 * 182.45538 * 11 10 9 39 39 H 1.09004 * 109.46754 * 297.65554 * 12 11 10 40 40 H 1.08994 * 109.53938 * 177.57847 * 12 11 10 41 41 H 0.96998 * 120.00013 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.91972 * 26.49297 * 23 2 1 43 43 H 1.09005 * 110.08351 * 265.28630 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5929 6 1 3.2143 0.5469 -2.5859 7 6 4.4896 -0.8532 -1.5380 8 7 4.4214 -1.7846 -2.6719 9 6 4.2863 -1.0592 -3.9416 10 6 4.3646 -2.0483 -5.1066 11 6 3.2455 -3.0841 -4.9675 12 6 3.3801 -3.7909 -3.6159 13 6 3.3304 -2.7512 -2.4940 14 1 2.3740 -2.2292 -2.5249 15 6 3.4830 -3.4414 -1.1631 16 1 4.3084 -3.1873 -0.5146 17 6 2.5695 -4.3978 -0.7736 18 7 1.5646 -4.7076 -1.5635 19 14 2.7591 -5.2538 0.8759 20 1 2.0283 -4.4883 1.9176 21 1 2.2011 -6.6271 0.7879 22 1 4.1986 -5.3263 1.2333 23 6 1.9990 -0.6354 -1.2258 24 1 -0.3634 -1.0265 -0.0467 25 1 -0.3633 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8658 27 1 1.4238 2.0204 -0.6730 28 1 2.0041 1.7978 1.0095 29 1 4.1115 0.8836 0.2788 30 1 3.8123 2.1351 -0.9716 31 1 4.4614 -1.4148 -0.6043 32 1 5.4172 -0.2832 -1.5914 33 1 5.0909 -0.3292 -4.0302 34 1 3.3254 -0.5452 -3.9655 35 1 4.2487 -1.5115 -6.0482 36 1 5.3310 -2.5523 -5.0918 37 1 2.2782 -2.5848 -5.0222 38 1 3.3246 -3.8160 -5.7715 39 1 4.3307 -4.3229 -3.5772 40 1 2.5612 -4.4995 -3.4920 41 1 0.9217 -5.3802 -1.2894 42 1 1.2759 -0.5404 -2.0358 43 1 2.2117 -1.6882 -1.0397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:01 Heat of formation + Delta-G solvation = 13.803099 kcal Electronic energy + Delta-G solvation = -20682.876857 eV Core-core repulsion = 17955.861100 eV Total energy + Delta-G solvation = -2727.015757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38206 -37.31612 -33.47705 -32.97794 -31.05970 -29.49910 -28.14513 -26.21929 -25.08933 -24.11437 -22.00174 -20.92292 -20.81059 -19.23459 -18.43144 -16.33036 -15.76640 -15.05962 -14.88064 -14.43348 -13.83254 -13.69553 -13.35009 -13.05455 -12.95568 -12.77500 -12.31552 -12.08726 -11.82556 -11.55154 -11.13410 -11.03503 -10.95974 -10.80288 -10.67730 -10.63503 -10.43766 -10.17651 -10.06906 -9.90867 -9.75084 -9.43604 -9.17412 -8.67805 -8.35615 -7.86023 -6.98173 -5.99475 -4.03018 3.35960 3.42095 3.45861 4.45005 4.56520 4.98614 5.14538 5.26520 5.33266 5.36094 5.65255 5.66997 5.75063 5.76770 5.79303 5.88852 5.92287 6.09769 6.12414 6.18255 6.23916 6.28994 6.39573 6.41557 6.44852 6.49455 6.59658 6.62986 6.83619 6.90864 6.96049 7.17846 7.24567 7.33582 7.55888 7.57631 7.63282 7.79530 7.87004 8.27231 8.38703 8.65964 9.04125 9.61547 11.05771 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.011932 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.064885 B = 2346.097974 C = 3612.655502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.031 3.969 4 C -0.115 4.115 5 C -0.131 4.131 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.533 5.533 9 C 0.056 3.944 10 C -0.112 4.112 11 C -0.122 4.122 12 C -0.108 4.108 13 C 0.205 3.795 14 H 0.018 0.982 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.274 1.274 23 C 0.016 3.984 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.018 0.982 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.260 0.740 42 H 0.024 0.976 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 9.142 -1.456 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.240 5.240 3 C -0.097 4.097 4 C -0.153 4.153 5 C -0.152 4.152 6 H 0.081 0.919 7 C -0.058 4.058 8 N -0.256 5.256 9 C -0.072 4.072 10 C -0.150 4.150 11 C -0.160 4.160 12 C -0.147 4.147 13 C 0.099 3.901 14 H 0.035 0.965 15 C -0.540 4.540 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.110 4.110 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.427 8.437 -1.027 8.618 hybrid contribution -1.183 0.528 0.001 1.295 sum 0.244 8.965 -1.026 9.027 Atomic orbital electron populations 1.22448 0.88920 1.02091 0.99461 1.64893 1.07218 1.13228 1.38648 1.23229 0.95510 0.91048 0.99914 1.22468 0.96292 0.97866 0.98692 1.22726 0.97976 0.96587 0.97883 0.91859 1.22193 0.94025 0.92538 0.97043 1.62212 1.48519 1.15205 0.99689 1.21980 0.98315 0.95381 0.91545 1.21547 0.99872 0.97359 0.96183 1.21680 0.97140 0.97519 0.99655 1.21687 1.02051 0.99680 0.91239 1.19568 0.87635 0.88615 0.94259 0.96500 1.21125 1.10487 1.20769 1.01598 0.91806 1.24884 0.95209 0.96530 0.97056 1.69886 1.14064 1.32706 1.36210 0.86595 0.78414 0.78700 0.84388 1.20511 1.21490 1.19890 1.23930 0.93578 1.04548 0.88950 0.91094 0.92192 0.96370 0.94887 0.90934 0.90684 0.92095 0.88756 0.93153 0.92805 0.96023 0.93538 0.91953 0.93615 0.93885 0.94021 0.88908 0.93015 0.95794 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.40 60.07 0.56 0.89 16 2 N -0.52 -9.61 5.55 -238.72 -1.33 -10.93 16 3 C 0.03 0.48 6.56 -1.89 -0.01 0.47 16 4 C -0.11 -1.74 6.61 -24.87 -0.16 -1.90 16 5 C -0.13 -2.34 2.66 -89.27 -0.24 -2.58 16 6 H 0.06 1.12 5.96 -51.93 -0.31 0.81 16 7 C 0.07 1.36 4.73 -3.83 -0.02 1.34 16 8 N -0.53 -11.20 4.69 -228.08 -1.07 -12.27 16 9 C 0.06 1.04 4.69 -3.83 -0.02 1.02 16 10 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 11 C -0.12 -2.41 6.00 -26.61 -0.16 -2.57 16 12 C -0.11 -2.54 5.13 -26.65 -0.14 -2.68 16 13 C 0.21 4.88 1.17 -68.88 -0.08 4.80 16 14 H 0.02 0.45 4.97 -51.93 -0.26 0.19 16 15 C -0.50 -13.02 6.05 -34.44 -0.21 -13.23 16 16 H 0.06 1.69 6.33 -52.48 -0.33 1.36 16 17 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.02 0.33 4.53 -2.76 -0.01 0.31 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 27 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 2.03 5.71 -51.93 -0.30 1.73 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.02 0.41 6.36 -51.93 -0.33 0.08 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.42 6.09 -51.93 -0.32 2.10 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.02 0.50 7.59 -51.93 -0.39 0.11 16 43 H 0.15 3.64 3.59 -51.93 -0.19 3.45 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -26.63 309.62 -10.31 -36.94 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.44 Total: 3.80 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.74 Total: -14.63 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -1.77 Total: -46.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.63 -10.31 -36.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.738 kcal (2) G-P(sol) polarization free energy of solvation -26.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds