Wall clock time and date at job start Mon Mar 30 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48534 * 110.99754 * 2 1 4 4 C 1.54945 * 103.22347 * 200.27755 * 3 2 1 5 5 C 1.54589 * 102.92092 * 37.41110 * 4 3 2 6 6 H 1.09000 * 110.39499 * 97.00112 * 5 4 3 7 7 C 1.52999 * 110.30945 * 219.12650 * 5 4 3 8 8 N 1.46898 * 109.47340 * 187.54099 * 7 5 4 9 9 C 1.46853 * 111.00085 * 52.84477 * 8 7 5 10 10 C 1.53032 * 109.52359 * 174.16246 * 9 8 7 11 11 C 1.53116 * 109.31161 * 59.15959 * 10 9 8 12 12 C 1.53118 * 109.16160 * 302.40419 * 11 10 9 13 13 C 1.46844 * 111.00106 * 288.63646 * 8 7 5 14 14 H 1.09004 * 109.46383 * 65.82305 * 13 8 7 15 15 C 1.50695 * 109.46402 * 305.84589 * 13 8 7 16 16 H 1.08005 * 119.99820 * 359.97438 * 15 13 8 17 17 C 1.37875 * 120.00549 * 180.02562 * 15 13 8 18 18 N 1.31517 * 119.99806 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00329 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47130 * 89.99720 * 19 17 15 21 21 H 1.48498 * 109.46903 * 209.99549 * 19 17 15 22 22 H 1.48505 * 109.47065 * 329.99531 * 19 17 15 23 23 C 1.47894 * 111.00089 * 242.59984 * 2 1 3 24 24 H 1.08997 * 109.47438 * 177.39730 * 1 2 3 25 25 H 1.09000 * 109.47191 * 297.39790 * 1 2 3 26 26 H 1.09003 * 109.47002 * 57.39743 * 1 2 3 27 27 H 1.08996 * 110.66938 * 318.70613 * 3 2 1 28 28 H 1.08995 * 110.67310 * 81.84632 * 3 2 1 29 29 H 1.08997 * 110.72243 * 279.05369 * 4 3 2 30 30 H 1.08998 * 110.72271 * 155.76951 * 4 3 2 31 31 H 1.08996 * 109.47405 * 67.54223 * 7 5 4 32 32 H 1.08998 * 109.46861 * 307.53720 * 7 5 4 33 33 H 1.09001 * 109.46224 * 54.14548 * 9 8 7 34 34 H 1.08999 * 109.45595 * 294.17395 * 9 8 7 35 35 H 1.09007 * 109.50434 * 179.12529 * 10 9 8 36 36 H 1.09004 * 109.50463 * 299.19528 * 10 9 8 37 37 H 1.08999 * 109.52236 * 62.27255 * 11 10 9 38 38 H 1.09010 * 109.52411 * 182.45538 * 11 10 9 39 39 H 1.09004 * 109.46754 * 297.65554 * 12 11 10 40 40 H 1.08994 * 109.53938 * 177.57847 * 12 11 10 41 41 H 0.96998 * 120.00013 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.91972 * 26.49297 * 23 2 1 43 43 H 1.09005 * 110.08351 * 265.28630 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5929 6 1 3.2143 0.5469 -2.5859 7 6 4.4896 -0.8532 -1.5380 8 7 4.4214 -1.7846 -2.6719 9 6 4.2863 -1.0592 -3.9416 10 6 4.3646 -2.0483 -5.1066 11 6 3.2455 -3.0841 -4.9675 12 6 3.3801 -3.7909 -3.6159 13 6 3.3304 -2.7512 -2.4940 14 1 2.3740 -2.2292 -2.5249 15 6 3.4830 -3.4414 -1.1631 16 1 4.3084 -3.1873 -0.5146 17 6 2.5695 -4.3978 -0.7736 18 7 1.5646 -4.7076 -1.5635 19 14 2.7591 -5.2538 0.8759 20 1 2.0283 -4.4883 1.9176 21 1 2.2011 -6.6271 0.7879 22 1 4.1986 -5.3263 1.2333 23 6 1.9990 -0.6354 -1.2258 24 1 -0.3634 -1.0265 -0.0467 25 1 -0.3633 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8658 27 1 1.4238 2.0204 -0.6730 28 1 2.0041 1.7978 1.0095 29 1 4.1115 0.8836 0.2788 30 1 3.8123 2.1351 -0.9716 31 1 4.4614 -1.4148 -0.6043 32 1 5.4172 -0.2832 -1.5914 33 1 5.0909 -0.3292 -4.0302 34 1 3.3254 -0.5452 -3.9655 35 1 4.2487 -1.5115 -6.0482 36 1 5.3310 -2.5523 -5.0918 37 1 2.2782 -2.5848 -5.0222 38 1 3.3246 -3.8160 -5.7715 39 1 4.3307 -4.3229 -3.5772 40 1 2.5612 -4.4995 -3.4920 41 1 0.9217 -5.3802 -1.2894 42 1 1.2759 -0.5404 -2.0358 43 1 2.2117 -1.6882 -1.0397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260095974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:01 Heat of formation + Delta-G solvation = -3.625910 kcal Electronic energy + Delta-G solvation = -20683.632636 eV Core-core repulsion = 17955.861100 eV Total energy + Delta-G solvation = -2727.771535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91443 -38.82480 -35.05382 -34.86654 -32.49038 -31.28977 -29.56429 -27.80943 -26.88559 -25.61035 -23.64066 -22.60417 -22.10969 -20.76246 -20.07023 -18.28517 -17.24216 -16.68233 -16.45343 -16.04201 -15.53063 -15.14806 -14.95974 -14.54441 -14.53627 -14.24471 -13.99896 -13.64318 -13.28475 -13.11770 -12.87937 -12.60915 -12.48809 -12.38302 -12.32078 -12.20378 -12.04494 -11.82114 -11.58413 -11.53969 -11.30016 -11.22054 -10.84846 -10.56926 -10.33167 -9.29325 -8.65017 -8.03549 -6.10937 1.42625 1.45051 1.52631 2.46907 3.21303 3.23717 3.50366 3.80241 3.90229 3.97566 4.18668 4.24884 4.37636 4.38651 4.42561 4.47692 4.60104 4.66788 4.73628 4.81955 4.84779 4.89478 4.90600 4.94917 5.01606 5.09998 5.14226 5.20863 5.27423 5.31548 5.35088 5.48732 5.55369 5.63962 5.73439 5.85863 5.91013 6.08969 6.19571 6.39224 6.56326 6.90349 7.04044 7.55887 9.00512 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.011932 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.064885 B = 2346.097974 C = 3612.655502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.033 3.967 4 C -0.107 4.107 5 C -0.124 4.124 6 H 0.070 0.930 7 C 0.074 3.926 8 N -0.545 5.545 9 C 0.055 3.945 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.107 4.107 13 C 0.216 3.784 14 H -0.004 1.004 15 C -0.502 4.502 16 H 0.053 0.947 17 C 0.023 3.977 18 N -0.914 5.914 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.271 1.271 23 C 0.022 3.978 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.257 0.743 42 H 0.004 0.996 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 11.400 -1.735 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.094 4.094 4 C -0.146 4.146 5 C -0.145 4.145 6 H 0.088 0.912 7 C -0.055 4.055 8 N -0.268 5.268 9 C -0.073 4.073 10 C -0.144 4.144 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.109 3.891 14 H 0.013 0.987 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.768 3.232 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.196 1.196 23 C -0.104 4.104 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.492 10.708 -1.301 11.071 hybrid contribution -1.515 -0.153 0.106 1.526 sum 0.978 10.556 -1.195 10.668 Atomic orbital electron populations 1.22429 0.88070 1.01044 1.01093 1.64819 1.08318 1.15611 1.37636 1.23320 0.95459 0.89234 1.01427 1.22481 0.96304 0.98001 0.97768 1.22624 0.95780 0.96851 0.99211 0.91156 1.22135 0.95827 0.92346 0.95150 1.62161 1.47072 1.16048 1.01539 1.22091 0.99075 0.95803 0.90308 1.21535 0.98642 0.96725 0.97498 1.21597 0.97924 0.98298 0.97649 1.21544 0.99754 0.99364 0.93863 1.19277 0.87627 0.88988 0.93195 0.98677 1.21316 1.09676 1.20465 1.02574 0.92896 1.25466 0.95234 0.97410 0.99524 1.70004 1.14713 1.33287 1.37395 0.85807 0.78248 0.77745 0.81369 1.20699 1.21307 1.19579 1.23612 0.94686 1.03038 0.89110 0.93497 0.89670 0.95541 0.93709 0.89007 0.90770 0.88959 0.91716 0.90596 0.90059 0.96495 0.90084 0.91907 0.94297 0.92231 0.95537 0.92100 0.93333 0.97742 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.40 127.69 1.20 1.93 16 2 N -0.54 -19.75 5.55 -909.17 -5.05 -24.80 16 3 C 0.03 0.93 6.56 86.65 0.57 1.49 16 4 C -0.11 -2.92 6.61 31.80 0.21 -2.71 16 5 C -0.12 -4.25 2.66 -9.92 -0.03 -4.27 16 6 H 0.07 2.32 5.96 -2.39 -0.01 2.31 16 7 C 0.07 2.77 4.73 86.30 0.41 3.18 16 8 N -0.54 -22.57 4.69 -875.52 -4.10 -26.67 16 9 C 0.06 1.90 4.69 86.32 0.41 2.31 16 10 C -0.11 -3.48 6.09 30.64 0.19 -3.29 16 11 C -0.12 -4.53 6.00 30.67 0.18 -4.34 16 12 C -0.11 -5.14 5.13 30.65 0.16 -4.99 16 13 C 0.22 10.52 1.17 44.19 0.05 10.58 16 14 H 0.00 -0.21 4.97 -2.38 -0.01 -0.23 16 15 C -0.50 -26.95 6.05 25.60 0.15 -26.80 16 16 H 0.05 2.90 6.33 -2.91 -0.02 2.88 16 17 C 0.02 1.24 5.30 84.65 0.45 1.69 16 18 N -0.91 -52.03 11.32 21.45 0.24 -51.79 16 19 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.02 0.93 4.53 86.45 0.39 1.32 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.03 0.80 8.00 -2.39 -0.02 0.78 16 27 H 0.04 1.16 7.96 -2.39 -0.02 1.14 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.05 7.86 -2.39 -0.02 2.03 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.81 5.71 -2.39 -0.01 2.80 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 34 H 0.02 0.61 6.36 -2.39 -0.02 0.59 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.06 3.31 6.09 -2.39 -0.01 3.29 16 41 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.00 0.18 7.59 -2.39 -0.02 0.17 16 43 H 0.11 5.52 3.59 -2.38 -0.01 5.51 16 Total: -1.00 -59.50 309.62 -1.58 -61.08 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.97 Total: 19.53 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.34 Total: -23.90 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -8.91 Total: -103.27 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.50 -1.58 -61.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.454 kcal (2) G-P(sol) polarization free energy of solvation -59.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds