Wall clock time and date at job start Mon Mar 30 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47839 * 111.00112 * 2 1 4 4 C 1.54916 * 104.79509 * 146.36354 * 3 2 1 5 5 C 1.55133 * 101.65274 * 322.93211 * 4 3 2 6 6 H 1.09006 * 110.70920 * 277.26938 * 5 4 3 7 7 C 1.52999 * 110.85812 * 154.10605 * 5 4 3 8 8 N 1.46898 * 109.47638 * 179.13884 * 7 5 4 9 9 C 1.46844 * 110.99793 * 313.15891 * 8 7 5 10 10 C 1.53039 * 109.52492 * 185.83962 * 9 8 7 11 11 C 1.53119 * 109.27440 * 300.81682 * 10 9 8 12 12 C 1.53128 * 109.16259 * 57.65539 * 11 10 9 13 13 C 1.46850 * 110.99785 * 77.36000 * 8 7 5 14 14 H 1.08996 * 109.46723 * 294.17768 * 13 8 7 15 15 C 1.50699 * 109.46159 * 54.15031 * 13 8 7 16 16 H 1.08007 * 119.99726 * 359.97438 * 15 13 8 17 17 C 1.37875 * 120.00293 * 179.97438 * 15 13 8 18 18 N 1.31516 * 119.99747 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00208 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47201 * 90.00359 * 19 17 15 21 21 H 1.48500 * 109.47518 * 210.00249 * 19 17 15 22 22 H 1.48503 * 109.47403 * 330.00566 * 19 17 15 23 23 C 1.47443 * 110.99849 * 120.84477 * 2 1 3 24 24 H 1.09007 * 109.46948 * 299.15556 * 1 2 3 25 25 H 1.09003 * 109.47183 * 59.15536 * 1 2 3 26 26 H 1.09000 * 109.47124 * 179.15637 * 1 2 3 27 27 H 1.08996 * 110.38022 * 265.19317 * 3 2 1 28 28 H 1.09006 * 110.37569 * 27.42567 * 3 2 1 29 29 H 1.09000 * 110.98829 * 204.83770 * 4 3 2 30 30 H 1.08993 * 110.98597 * 81.02520 * 4 3 2 31 31 H 1.08998 * 109.46686 * 299.13846 * 7 5 4 32 32 H 1.09001 * 109.47018 * 59.13443 * 7 5 4 33 33 H 1.09000 * 109.46123 * 305.84907 * 9 8 7 34 34 H 1.08998 * 109.47051 * 65.81821 * 9 8 7 35 35 H 1.08995 * 109.50602 * 180.87542 * 10 9 8 36 36 H 1.08999 * 109.53348 * 60.77157 * 10 9 8 37 37 H 1.09000 * 109.52864 * 297.75085 * 11 10 9 38 38 H 1.09003 * 109.57577 * 177.58753 * 11 10 9 39 39 H 1.09002 * 109.50268 * 182.40706 * 12 11 10 40 40 H 1.08990 * 109.53300 * 62.30294 * 12 11 10 41 41 H 0.97000 * 119.99705 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.88660 * 117.33350 * 23 2 1 43 43 H 1.09000 * 109.88944 * 356.15064 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3026 0.8297 5 6 2.9159 0.2821 1.9314 6 1 2.3744 0.7745 2.7392 7 6 4.1548 -0.4349 2.4717 8 7 3.7549 -1.3772 3.5253 9 6 2.8322 -0.7434 4.4756 10 6 2.5523 -1.7031 5.6343 11 6 1.9407 -2.9947 5.0845 12 6 2.9000 -3.6093 4.0614 13 6 3.1697 -2.5942 2.9483 14 1 2.2333 -2.3455 2.4490 15 6 4.1291 -3.1878 1.9492 16 1 5.0785 -2.7082 1.7615 17 6 3.7949 -4.3429 1.2747 18 7 2.6387 -4.9265 1.5029 19 14 4.9839 -5.0782 0.0357 20 1 5.8860 -6.0365 0.7237 21 1 4.2206 -5.7889 -1.0215 22 1 5.7905 -3.9941 -0.5801 23 6 1.9973 -0.7058 1.1818 24 1 -0.3633 0.5007 0.8975 25 1 -0.3634 0.5269 -0.8823 26 1 -0.3633 -1.0275 -0.0151 27 1 2.2148 1.7039 -1.0181 28 1 1.2881 2.0596 0.4707 29 1 3.5495 2.2719 1.2640 30 1 4.1301 0.9281 0.2243 31 1 4.6411 -0.9796 1.6625 32 1 4.8480 0.2984 2.8840 33 1 3.2809 0.1716 4.8623 34 1 1.8973 -0.5033 3.9691 35 1 1.8553 -1.2384 6.3316 36 1 3.4845 -1.9329 6.1504 37 1 0.9890 -2.7708 4.6026 38 1 1.7790 -3.6986 5.9008 39 1 2.4512 -4.5064 3.6349 40 1 3.8380 -3.8695 4.5518 41 1 2.4034 -5.7390 1.0281 42 1 2.5696 -1.5786 0.8673 43 1 1.1754 -1.0121 1.8290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:04 Heat of formation + Delta-G solvation = 8.970707 kcal Electronic energy + Delta-G solvation = -20620.401549 eV Core-core repulsion = 17893.176244 eV Total energy + Delta-G solvation = -2727.225305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42031 -37.38007 -33.49858 -32.91728 -31.06377 -29.47095 -28.28531 -26.25750 -25.12619 -24.17486 -22.06056 -20.94358 -20.80902 -19.32841 -18.39918 -16.36606 -15.89065 -14.99549 -14.90681 -14.43460 -13.84674 -13.79608 -13.34179 -13.12257 -12.82361 -12.76601 -12.46149 -12.20441 -11.94991 -11.64395 -11.19225 -11.10251 -10.92537 -10.84759 -10.69611 -10.64079 -10.50026 -10.19123 -10.07908 -10.01618 -9.81927 -9.50578 -9.16953 -8.68284 -8.33911 -7.87361 -7.00692 -5.97670 -4.01227 3.34539 3.41371 3.44386 4.44003 4.45764 4.91936 5.09857 5.20529 5.29364 5.35452 5.60245 5.65170 5.67024 5.71250 5.73132 5.87221 5.90502 6.02251 6.09555 6.11648 6.15163 6.23075 6.33718 6.37269 6.42135 6.46181 6.58661 6.62345 6.82539 6.89460 6.92656 7.10072 7.21586 7.33667 7.43335 7.50379 7.63992 7.79694 7.87555 8.27226 8.39815 8.67136 9.05217 9.63234 11.08139 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.010498 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.094374 B = 2666.457198 C = 3640.868340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.041 3.959 4 C -0.121 4.121 5 C -0.140 4.140 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.532 5.532 9 C 0.058 3.942 10 C -0.112 4.112 11 C -0.122 4.122 12 C -0.108 4.108 13 C 0.205 3.795 14 H 0.020 0.980 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.044 3.956 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.119 0.881 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 9.791 1.411 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.161 4.161 6 H 0.082 0.918 7 C -0.059 4.059 8 N -0.256 5.256 9 C -0.071 4.071 10 C -0.150 4.150 11 C -0.160 4.160 12 C -0.146 4.146 13 C 0.099 3.901 14 H 0.037 0.963 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.082 4.082 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.137 0.863 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.920 9.206 1.163 9.475 hybrid contribution -0.601 0.233 -0.264 0.697 sum -2.521 9.438 0.899 9.811 Atomic orbital electron populations 1.22486 0.88716 1.01936 0.99422 1.63717 1.07108 1.13355 1.41758 1.23013 0.95736 0.90095 0.99808 1.22687 0.97617 0.98645 0.97032 1.23112 0.99291 0.96650 0.97066 0.91783 1.22166 0.94381 0.93973 0.95392 1.62205 1.41175 1.06210 1.15968 1.21972 0.94598 0.96246 0.94280 1.21551 1.00059 0.96524 0.96859 1.21679 0.99296 0.96045 0.98951 1.21681 0.96842 1.01279 0.94819 1.19553 0.94461 0.84680 0.91409 0.96268 1.21139 1.03181 1.08898 1.20923 0.91980 1.24878 0.95181 0.96777 0.96948 1.69877 1.21123 1.19642 1.42206 0.86601 0.81032 0.79333 0.81071 1.20884 1.21403 1.19885 1.23432 0.97601 0.98176 0.88995 0.96311 0.92182 0.91356 0.90985 0.94555 0.91685 0.90461 0.88675 0.93058 0.92906 0.96060 0.93564 0.91960 0.93636 0.93905 0.88923 0.94081 0.93045 0.86284 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.12 60.06 0.55 0.90 16 2 N -0.54 -9.44 5.44 -239.51 -1.30 -10.75 16 3 C 0.04 0.61 6.73 -2.30 -0.02 0.60 16 4 C -0.12 -1.79 6.53 -24.59 -0.16 -1.95 16 5 C -0.14 -2.42 2.32 -88.80 -0.21 -2.63 16 6 H 0.06 1.09 6.27 -51.93 -0.33 0.77 16 7 C 0.07 1.33 4.92 -3.83 -0.02 1.31 16 8 N -0.53 -11.12 4.69 -228.08 -1.07 -12.19 16 9 C 0.06 1.06 4.45 -3.83 -0.02 1.04 16 10 C -0.11 -1.98 6.09 -26.65 -0.16 -2.14 16 11 C -0.12 -2.41 6.00 -26.60 -0.16 -2.57 16 12 C -0.11 -2.54 5.14 -26.64 -0.14 -2.68 16 13 C 0.20 4.86 1.17 -68.87 -0.08 4.78 16 14 H 0.02 0.50 4.46 -51.93 -0.23 0.27 16 15 C -0.50 -13.10 6.58 -34.44 -0.23 -13.32 16 16 H 0.06 1.64 6.41 -52.48 -0.34 1.30 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.04 0.87 4.48 -2.84 -0.01 0.86 16 24 H 0.02 0.27 8.10 -51.93 -0.42 -0.15 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.50 7.78 -51.93 -0.40 0.09 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.10 2.02 5.57 -51.93 -0.29 1.73 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.02 0.40 6.15 -51.93 -0.32 0.08 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.43 6.09 -51.93 -0.32 2.11 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.12 2.82 5.38 -51.93 -0.28 2.54 16 43 H 0.05 0.94 6.46 -51.93 -0.34 0.61 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -26.75 309.73 -10.30 -37.05 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.46 Total: 3.20 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.74 Total: -14.20 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -1.75 Total: -46.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.75 -10.30 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.025 kcal (2) G-P(sol) polarization free energy of solvation -26.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds