Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48554 * 111.00179 * 2 1 4 4 C 1.54388 * 104.59483 * 200.95739 * 3 2 1 5 5 C 1.54260 * 105.05846 * 23.85091 * 4 3 2 6 6 H 1.08998 * 110.32434 * 241.00205 * 5 4 3 7 7 C 1.53001 * 110.32358 * 118.89613 * 5 4 3 8 8 N 1.46910 * 109.46982 * 174.99927 * 7 5 4 9 9 C 1.46842 * 110.99703 * 293.95645 * 8 7 5 10 10 C 1.53039 * 109.52266 * 174.16402 * 9 8 7 11 11 C 1.53123 * 109.31189 * 59.15550 * 10 9 8 12 12 C 1.53129 * 109.15931 * 302.40768 * 11 10 9 13 13 C 1.46849 * 110.99768 * 169.74725 * 8 7 5 14 14 H 1.08995 * 109.46417 * 65.82041 * 13 8 7 15 15 C 1.50702 * 109.45851 * 305.84052 * 13 8 7 16 16 H 1.07997 * 120.00271 * 0.02562 * 15 13 8 17 17 C 1.37877 * 119.99555 * 180.02562 * 15 13 8 18 18 N 1.31517 * 120.00212 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99887 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47159 * 60.00523 * 19 17 15 21 21 H 1.48506 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47197 * 300.00411 * 19 17 15 23 23 C 1.48556 * 111.00042 * 244.57373 * 2 1 3 24 24 H 1.09000 * 109.47081 * 60.12974 * 1 2 3 25 25 H 1.09003 * 109.47793 * 180.12801 * 1 2 3 26 26 H 1.08993 * 109.47593 * 300.12917 * 1 2 3 27 27 H 1.08999 * 110.41398 * 82.17971 * 3 2 1 28 28 H 1.09002 * 110.50865 * 319.78121 * 3 2 1 29 29 H 1.08992 * 110.32215 * 264.95596 * 4 3 2 30 30 H 1.08997 * 110.32270 * 142.74118 * 4 3 2 31 31 H 1.08999 * 109.47178 * 55.00077 * 7 5 4 32 32 H 1.08994 * 109.47257 * 294.99421 * 7 5 4 33 33 H 1.08995 * 109.46659 * 54.14295 * 9 8 7 34 34 H 1.09002 * 109.45412 * 294.16581 * 9 8 7 35 35 H 1.09002 * 109.50563 * 179.11883 * 10 9 8 36 36 H 1.09003 * 109.50107 * 299.19864 * 10 9 8 37 37 H 1.09000 * 109.52057 * 62.27355 * 11 10 9 38 38 H 1.08995 * 109.52240 * 182.46183 * 11 10 9 39 39 H 1.09000 * 109.46579 * 297.65836 * 12 11 10 40 40 H 1.08997 * 109.50406 * 177.55366 * 12 11 10 41 41 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.41267 * 40.26759 * 23 2 1 43 43 H 1.08998 * 110.41864 * 277.82123 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0541 -1.3584 6 1 4.1496 -0.7688 -0.9361 7 6 3.7948 0.2397 -2.8182 8 7 3.9069 -1.0241 -3.5588 9 6 5.0457 -1.8166 -3.0778 10 6 5.0455 -3.1829 -3.7671 11 6 5.1407 -2.9856 -5.2826 12 6 3.9704 -2.1160 -5.7506 13 6 4.0019 -0.7806 -5.0038 14 1 4.9355 -0.2631 -5.2243 15 6 2.8395 0.0699 -5.4471 16 1 2.1041 0.3970 -4.7270 17 6 2.7149 0.4304 -6.7721 18 7 3.6101 0.0316 -7.6491 19 14 1.2744 1.4851 -7.3215 20 1 1.3062 2.7818 -6.5985 21 1 1.3695 1.7304 -8.7831 22 1 0.0021 0.7813 -7.0200 23 6 2.0013 -0.5955 -1.2526 24 1 -0.3633 0.5118 -0.8911 25 1 -0.3635 -1.0276 0.0023 26 1 -0.3634 0.5158 0.8887 27 1 2.0079 1.7916 1.0120 28 1 1.4104 2.0228 -0.6592 29 1 4.1483 1.1747 0.2935 30 1 3.6937 2.0993 -1.1700 31 1 4.7446 0.7726 -2.8631 32 1 3.0123 0.8537 -3.2639 33 1 4.9633 -1.9537 -1.9996 34 1 5.9744 -1.2942 -3.3075 35 1 5.8998 -3.7650 -3.4216 36 1 4.1233 -3.7119 -3.5263 37 1 6.0812 -2.4920 -5.5272 38 1 5.0968 -3.9546 -5.7796 39 1 3.0311 -2.6279 -5.5414 40 1 4.0567 -1.9358 -6.8222 41 1 3.5222 0.2850 -8.5813 42 1 1.4099 -0.2714 -2.1089 43 1 2.0078 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -1.049690 kcal Electronic energy + Delta-G solvation = -19996.874191 eV Core-core repulsion = 17269.214368 eV Total energy + Delta-G solvation = -2727.659822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06582 -37.63612 -33.57468 -32.91082 -31.27986 -29.48420 -28.56954 -26.18851 -25.19343 -24.05534 -21.92915 -21.07178 -20.82605 -19.27485 -18.58191 -16.47145 -15.91885 -15.16291 -14.96203 -14.30427 -14.21640 -13.73755 -13.53376 -13.29110 -13.07551 -12.62835 -12.44450 -12.25981 -11.98109 -11.64256 -11.33053 -11.23257 -10.96165 -10.93391 -10.76721 -10.61691 -10.54857 -10.38319 -10.24291 -10.04930 -9.87411 -9.55582 -9.10006 -8.72604 -8.38631 -8.29752 -7.10675 -6.01841 -4.06424 3.29412 3.34461 3.36735 4.28683 4.38834 4.81635 4.95418 5.11901 5.28003 5.32782 5.53211 5.54549 5.61241 5.69992 5.74548 5.77829 5.93658 5.94627 5.96367 6.09371 6.12568 6.24127 6.26350 6.30093 6.40785 6.45782 6.49990 6.56873 6.63822 6.84117 6.87832 6.92575 7.07329 7.16134 7.22501 7.32008 7.61426 7.75547 7.83357 8.24259 8.36493 8.64217 9.00193 9.58224 11.04359 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.008253 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.195868 B = 3391.733080 C = 4584.791399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.524 5.524 3 C 0.032 3.968 4 C -0.121 4.121 5 C -0.088 4.088 6 H 0.073 0.927 7 C 0.070 3.930 8 N -0.531 5.531 9 C 0.056 3.944 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.104 4.104 13 C 0.220 3.780 14 H -0.004 1.004 15 C -0.505 4.505 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.052 3.948 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.261 0.739 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -0.661 11.382 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.248 5.248 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.108 4.108 6 H 0.091 0.909 7 C -0.059 4.059 8 N -0.256 5.256 9 C -0.073 4.073 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.142 4.142 13 C 0.114 3.886 14 H 0.014 0.986 15 C -0.543 4.543 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.075 4.075 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.922 -1.223 11.724 11.824 hybrid contribution -0.307 1.459 -1.277 1.963 sum -1.229 0.236 10.448 10.522 Atomic orbital electron populations 1.22460 0.88673 1.01956 1.00358 1.65403 1.07723 1.15057 1.36601 1.23077 0.95693 0.90468 1.00323 1.22345 0.96013 0.98319 0.99250 1.21969 0.96774 0.96077 0.95943 0.90896 1.22120 1.00158 0.92394 0.91205 1.61984 1.39830 1.16987 1.06821 1.22019 0.92422 0.94663 0.98194 1.21529 1.00460 0.96377 0.96450 1.21687 1.00354 0.99299 0.94697 1.21626 0.94610 0.95012 1.02966 1.19167 0.95768 0.92872 0.80780 0.98608 1.21129 1.09188 1.30678 0.93321 0.92062 1.24919 0.96209 0.96240 0.96707 1.69876 1.34829 1.45623 1.02717 0.86646 0.83024 0.80770 0.77471 1.20420 1.21329 1.20261 1.23039 0.94810 0.99925 0.89751 0.95319 0.91463 0.91941 0.90863 0.93969 0.91574 0.91214 0.96350 0.89372 0.92272 0.96523 0.93456 0.91947 0.93507 0.93837 0.93932 0.88962 0.92933 0.92836 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 60.06 0.57 0.76 16 2 N -0.52 -7.58 5.66 -238.24 -1.35 -8.93 16 3 C 0.03 0.43 6.49 -2.18 -0.01 0.42 16 4 C -0.12 -1.66 6.65 -25.34 -0.17 -1.83 16 5 C -0.09 -1.40 3.02 -89.23 -0.27 -1.67 16 6 H 0.07 1.15 6.21 -51.93 -0.32 0.83 16 7 C 0.07 1.34 3.84 -3.82 -0.01 1.33 16 8 N -0.53 -11.16 4.35 -228.08 -0.99 -12.15 16 9 C 0.06 1.03 5.30 -3.84 -0.02 1.01 16 10 C -0.11 -1.95 6.09 -26.65 -0.16 -2.11 16 11 C -0.12 -2.43 6.01 -26.60 -0.16 -2.59 16 12 C -0.10 -2.47 5.13 -26.65 -0.14 -2.61 16 13 C 0.22 5.46 1.83 -68.87 -0.13 5.33 16 14 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 15 C -0.50 -13.49 7.80 -34.44 -0.27 -13.76 16 16 H 0.06 1.63 6.31 -52.49 -0.33 1.30 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.05 0.84 5.91 -2.18 -0.01 0.83 16 24 H 0.03 0.37 7.97 -51.93 -0.41 -0.04 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.57 7.98 -51.93 -0.41 0.16 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 31 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.09 1.88 5.64 -51.93 -0.29 1.59 16 33 H 0.06 0.98 6.12 -51.93 -0.32 0.66 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 2.44 6.09 -51.93 -0.32 2.13 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.05 0.97 7.51 -51.93 -0.39 0.58 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -27.38 320.77 -10.60 -37.99 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.83 Total: -0.01 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.88 Total: -13.34 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.71 Total: -45.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.38 -10.60 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.936 kcal (2) G-P(sol) polarization free energy of solvation -27.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds