Wall clock time and date at job start Mon Mar 30 2020 04:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48554 * 111.00179 * 2 1 4 4 C 1.54388 * 104.59483 * 200.95739 * 3 2 1 5 5 C 1.54260 * 105.05846 * 23.85091 * 4 3 2 6 6 H 1.08998 * 110.32434 * 241.00205 * 5 4 3 7 7 C 1.53001 * 110.32358 * 118.89613 * 5 4 3 8 8 N 1.46910 * 109.46982 * 174.99927 * 7 5 4 9 9 C 1.46842 * 110.99703 * 293.95645 * 8 7 5 10 10 C 1.53039 * 109.52266 * 174.16402 * 9 8 7 11 11 C 1.53123 * 109.31189 * 59.15550 * 10 9 8 12 12 C 1.53129 * 109.15931 * 302.40768 * 11 10 9 13 13 C 1.46849 * 110.99768 * 169.74725 * 8 7 5 14 14 H 1.08995 * 109.46417 * 65.82041 * 13 8 7 15 15 C 1.50702 * 109.45851 * 305.84052 * 13 8 7 16 16 H 1.07997 * 120.00271 * 0.02562 * 15 13 8 17 17 C 1.37877 * 119.99555 * 180.02562 * 15 13 8 18 18 N 1.31517 * 120.00212 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99887 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47159 * 60.00523 * 19 17 15 21 21 H 1.48506 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47197 * 300.00411 * 19 17 15 23 23 C 1.48556 * 111.00042 * 244.57373 * 2 1 3 24 24 H 1.09000 * 109.47081 * 60.12974 * 1 2 3 25 25 H 1.09003 * 109.47793 * 180.12801 * 1 2 3 26 26 H 1.08993 * 109.47593 * 300.12917 * 1 2 3 27 27 H 1.08999 * 110.41398 * 82.17971 * 3 2 1 28 28 H 1.09002 * 110.50865 * 319.78121 * 3 2 1 29 29 H 1.08992 * 110.32215 * 264.95596 * 4 3 2 30 30 H 1.08997 * 110.32270 * 142.74118 * 4 3 2 31 31 H 1.08999 * 109.47178 * 55.00077 * 7 5 4 32 32 H 1.08994 * 109.47257 * 294.99421 * 7 5 4 33 33 H 1.08995 * 109.46659 * 54.14295 * 9 8 7 34 34 H 1.09002 * 109.45412 * 294.16581 * 9 8 7 35 35 H 1.09002 * 109.50563 * 179.11883 * 10 9 8 36 36 H 1.09003 * 109.50107 * 299.19864 * 10 9 8 37 37 H 1.09000 * 109.52057 * 62.27355 * 11 10 9 38 38 H 1.08995 * 109.52240 * 182.46183 * 11 10 9 39 39 H 1.09000 * 109.46579 * 297.65836 * 12 11 10 40 40 H 1.08997 * 109.50406 * 177.55366 * 12 11 10 41 41 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.41267 * 40.26759 * 23 2 1 43 43 H 1.08998 * 110.41864 * 277.82123 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0541 -1.3584 6 1 4.1496 -0.7688 -0.9361 7 6 3.7948 0.2397 -2.8182 8 7 3.9069 -1.0241 -3.5588 9 6 5.0457 -1.8166 -3.0778 10 6 5.0455 -3.1829 -3.7671 11 6 5.1407 -2.9856 -5.2826 12 6 3.9704 -2.1160 -5.7506 13 6 4.0019 -0.7806 -5.0038 14 1 4.9355 -0.2631 -5.2243 15 6 2.8395 0.0699 -5.4471 16 1 2.1041 0.3970 -4.7270 17 6 2.7149 0.4304 -6.7721 18 7 3.6101 0.0316 -7.6491 19 14 1.2744 1.4851 -7.3215 20 1 1.3062 2.7818 -6.5985 21 1 1.3695 1.7304 -8.7831 22 1 0.0021 0.7813 -7.0200 23 6 2.0013 -0.5955 -1.2526 24 1 -0.3633 0.5118 -0.8911 25 1 -0.3635 -1.0276 0.0023 26 1 -0.3634 0.5158 0.8887 27 1 2.0079 1.7916 1.0120 28 1 1.4104 2.0228 -0.6592 29 1 4.1483 1.1747 0.2935 30 1 3.6937 2.0993 -1.1700 31 1 4.7446 0.7726 -2.8631 32 1 3.0123 0.8537 -3.2639 33 1 4.9633 -1.9537 -1.9996 34 1 5.9744 -1.2942 -3.3075 35 1 5.8998 -3.7650 -3.4216 36 1 4.1233 -3.7119 -3.5263 37 1 6.0812 -2.4920 -5.5272 38 1 5.0968 -3.9546 -5.7796 39 1 3.0311 -2.6279 -5.5414 40 1 4.0567 -1.9358 -6.8222 41 1 3.5222 0.2850 -8.5813 42 1 1.4099 -0.2714 -2.1089 43 1 2.0078 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260095979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:06 Heat of formation + Delta-G solvation = -18.461764 kcal Electronic energy + Delta-G solvation = -19997.629235 eV Core-core repulsion = 17269.214368 eV Total energy + Delta-G solvation = -2728.414866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45384 -39.13808 -35.11177 -34.82811 -32.63577 -31.30677 -29.83858 -27.57275 -27.03154 -25.47352 -23.52304 -22.75864 -22.00673 -20.63704 -20.30433 -18.45911 -17.36868 -16.67289 -16.41422 -15.83348 -15.66835 -15.21486 -14.97028 -14.91200 -14.41353 -14.32326 -13.89034 -13.76391 -13.72250 -12.92094 -12.84692 -12.65867 -12.58817 -12.36065 -12.33749 -12.20700 -11.99204 -11.86209 -11.81332 -11.75661 -11.43838 -11.32761 -10.75025 -10.66370 -10.40199 -9.46040 -8.86130 -8.11158 -6.22631 1.38322 1.39772 1.47087 2.39559 3.12968 3.16689 3.33337 3.77213 3.91447 4.04823 4.17585 4.21714 4.31538 4.39577 4.48945 4.57767 4.59591 4.66141 4.69945 4.80471 4.84028 4.87797 4.90892 4.98166 4.99820 5.02326 5.05524 5.13306 5.19073 5.25840 5.30861 5.34337 5.46309 5.48758 5.65369 5.77354 5.83144 5.90280 6.10134 6.30456 6.46531 6.81873 6.93645 7.45896 8.93793 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.008253 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.195868 B = 3391.733080 C = 4584.791399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.526 5.526 3 C 0.033 3.967 4 C -0.117 4.117 5 C -0.080 4.080 6 H 0.082 0.918 7 C 0.076 3.924 8 N -0.534 5.534 9 C 0.053 3.947 10 C -0.104 4.104 11 C -0.118 4.118 12 C -0.098 4.098 13 C 0.226 3.774 14 H -0.046 1.046 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.058 3.942 24 H 0.019 0.981 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.010 0.990 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.009 0.991 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.261 0.739 42 H 0.026 0.974 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -1.020 13.527 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.053 4.053 8 N -0.259 5.259 9 C -0.075 4.075 10 C -0.142 4.142 11 C -0.156 4.156 12 C -0.137 4.137 13 C 0.119 3.881 14 H -0.028 1.028 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.070 4.070 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.187 -1.582 13.892 14.032 hybrid contribution -0.216 1.582 -1.925 2.501 sum -1.403 0.000 11.967 12.049 Atomic orbital electron populations 1.22530 0.87525 1.02543 1.00947 1.65427 1.08886 1.15685 1.34957 1.23151 0.95018 0.89823 1.01530 1.22352 0.97022 0.96779 0.99433 1.21870 0.96772 0.97673 0.93597 0.89974 1.22053 0.98720 0.91376 0.93119 1.61967 1.41239 1.17917 1.04776 1.22164 0.90928 0.94605 0.99834 1.21517 1.02214 0.96168 0.94261 1.21617 0.97873 0.99195 0.96873 1.21436 0.95939 0.95291 1.01023 1.18943 0.93005 0.92668 0.83458 1.02833 1.21409 1.09618 1.31054 0.93492 0.92572 1.25669 0.98616 0.97458 0.96851 1.70017 1.36353 1.46595 1.02832 0.85693 0.80047 0.79314 0.77078 1.19793 1.20912 1.19808 1.22884 0.94618 0.99755 0.89755 0.96244 0.90989 0.89770 0.88483 0.94589 0.89500 0.91525 0.97148 0.92159 0.89521 0.97311 0.89839 0.91655 0.94251 0.91807 0.95033 0.92152 0.93021 0.95607 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.53 127.69 1.22 1.52 16 2 N -0.53 -14.14 5.66 -907.65 -5.14 -19.27 16 3 C 0.03 0.79 6.49 86.45 0.56 1.35 16 4 C -0.12 -2.98 6.65 31.49 0.21 -2.77 16 5 C -0.08 -2.44 3.02 -9.90 -0.03 -2.47 16 6 H 0.08 2.38 6.21 -2.39 -0.01 2.37 16 7 C 0.08 2.96 3.84 86.30 0.33 3.29 16 8 N -0.53 -22.65 4.35 -875.50 -3.81 -26.46 16 9 C 0.05 1.87 5.30 86.33 0.46 2.33 16 10 C -0.10 -3.43 6.09 30.65 0.19 -3.24 16 11 C -0.12 -4.60 6.01 30.68 0.18 -4.41 16 12 C -0.10 -4.81 5.13 30.65 0.16 -4.65 16 13 C 0.23 11.63 1.83 44.19 0.08 11.71 16 14 H -0.05 -2.68 8.14 -2.39 -0.02 -2.70 16 15 C -0.52 -28.66 7.80 25.60 0.20 -28.46 16 16 H 0.06 3.10 6.31 -2.91 -0.02 3.08 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 19 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.06 1.82 5.91 86.45 0.51 2.33 16 24 H 0.02 0.48 7.97 -2.39 -0.02 0.46 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 0.92 7.98 -2.39 -0.02 0.90 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 31 H 0.01 0.41 8.12 -2.39 -0.02 0.40 16 32 H 0.06 2.67 5.64 -2.39 -0.01 2.66 16 33 H 0.09 2.62 6.12 -2.39 -0.01 2.61 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 39 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 3.33 6.09 -2.39 -0.01 3.31 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 42 H 0.03 0.95 7.51 -2.39 -0.02 0.93 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -60.63 320.77 -1.21 -61.84 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.95 Total: 13.24 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.52 Total: -22.31 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -8.70 Total: -98.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.63 -1.21 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.383 kcal (2) G-P(sol) polarization free energy of solvation -60.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds