Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46964 * 110.99639 * 2 1 4 4 C 1.53056 * 109.36121 * 176.81173 * 3 2 1 5 5 N 1.46954 * 109.36345 * 58.40061 * 4 3 2 6 6 C 1.46906 * 110.99891 * 176.80813 * 5 4 3 7 7 C 1.52999 * 109.47221 * 307.76526 * 6 5 4 8 8 C 1.54262 * 110.03087 * 295.33478 * 7 6 5 9 9 C 1.54967 * 104.16143 * 217.13909 * 8 7 6 10 10 C 1.54891 * 102.77601 * 37.88478 * 9 8 7 11 11 C 1.53875 * 110.03019 * 178.11868 * 7 6 5 12 12 C 1.46956 * 110.88441 * 300.67845 * 5 4 3 13 13 H 1.08998 * 109.48526 * 299.35606 * 12 5 4 14 14 C 1.50693 * 109.49215 * 179.29130 * 12 5 4 15 15 H 1.07998 * 120.00152 * 0.10360 * 14 12 5 16 16 C 1.37882 * 120.00008 * 180.10885 * 14 12 5 17 17 N 1.31512 * 119.99781 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99950 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47134 * 59.99983 * 18 16 14 20 20 H 1.48502 * 109.46997 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47102 * 299.99714 * 18 16 14 22 22 C 1.46957 * 111.00279 * 236.19989 * 2 1 3 23 23 H 1.09004 * 109.47259 * 183.80378 * 1 2 3 24 24 H 1.09005 * 109.47524 * 303.80049 * 1 2 3 25 25 H 1.09003 * 109.47418 * 63.80140 * 1 2 3 26 26 H 1.08992 * 109.49324 * 56.84637 * 3 2 1 27 27 H 1.08998 * 109.48758 * 296.77728 * 3 2 1 28 28 H 1.08996 * 109.48835 * 298.42999 * 4 3 2 29 29 H 1.09002 * 109.50360 * 178.37799 * 4 3 2 30 30 H 1.09000 * 109.46901 * 67.76382 * 6 5 4 31 31 H 1.09005 * 109.47007 * 187.76099 * 6 5 4 32 32 H 1.08997 * 110.01890 * 56.72229 * 7 6 5 33 33 H 1.09001 * 110.49129 * 335.78285 * 8 7 6 34 34 H 1.09000 * 110.48939 * 98.42459 * 8 7 6 35 35 H 1.09004 * 110.71850 * 279.57199 * 9 8 7 36 36 H 1.08999 * 110.92477 * 156.29458 * 9 8 7 37 37 H 1.09003 * 110.48292 * 203.40605 * 10 9 8 38 38 H 1.08995 * 110.59331 * 80.82426 * 10 9 8 39 39 H 1.08998 * 110.02671 * 238.56711 * 11 7 6 40 40 H 1.08994 * 110.03525 * 359.97438 * 11 7 6 41 41 H 0.97005 * 119.99550 * 179.97438 * 17 16 14 42 42 H 1.09008 * 109.48681 * 63.21739 * 22 2 1 43 43 H 1.08996 * 109.48959 * 303.15664 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3721 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0500 0.5660 -1.0598 6 6 5.5191 0.5661 -1.0598 7 6 6.0290 2.0051 -0.9601 8 6 5.6204 2.7989 -2.2181 9 6 6.8336 3.7226 -2.4943 10 6 8.0403 2.8175 -2.1426 11 6 7.5669 2.0171 -0.9117 12 6 3.5234 -0.8060 -1.0598 13 1 3.8253 -1.3113 -0.1425 14 6 4.0686 -1.5538 -2.2491 15 1 4.7406 -1.0603 -2.9356 16 6 3.7095 -2.8681 -2.4609 17 7 2.8915 -3.4691 -1.6247 18 14 4.3848 -3.7948 -3.9355 19 1 5.8671 -3.8361 -3.8578 20 1 3.8500 -5.1802 -3.9368 21 1 3.9736 -3.1048 -5.1845 22 6 1.9957 -0.7632 -1.1401 23 1 -0.3634 -1.0254 0.0682 24 1 -0.3634 0.5717 0.8540 25 1 -0.3634 0.4537 -0.9221 26 1 1.6013 1.9129 0.8602 27 1 1.6936 1.8774 -0.9174 28 1 3.8253 0.8481 1.0106 29 1 3.9180 2.3449 0.0514 30 1 5.8824 -0.0080 -0.2075 31 1 5.8824 0.1149 -1.9832 32 1 5.6236 2.4837 -0.0687 33 1 5.4559 2.1242 -3.0583 34 1 4.7261 3.3905 -2.0222 35 1 6.8063 4.5990 -1.8466 36 1 6.8660 4.0197 -3.5425 37 1 8.9112 3.4232 -1.8921 38 1 8.2693 2.1455 -2.9696 39 1 7.9079 2.5023 0.0028 40 1 7.9500 0.9978 -0.9588 41 1 2.6386 -4.3936 -1.7739 42 1 1.6937 -0.2820 -2.0704 43 1 1.6014 -1.7789 -1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -1.008614 kcal Electronic energy + Delta-G solvation = -20027.269495 eV Core-core repulsion = 17299.611454 eV Total energy + Delta-G solvation = -2727.658041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.87901 -37.42950 -34.46738 -32.93472 -29.79693 -29.65590 -28.35495 -26.85595 -25.23082 -23.84185 -22.12856 -21.27490 -20.39392 -19.02108 -18.53266 -16.49507 -15.79101 -14.98665 -14.83428 -14.35199 -14.14567 -13.88594 -13.50191 -13.47648 -13.14675 -12.97704 -12.58652 -12.14794 -11.46529 -11.33572 -11.13004 -10.94374 -10.89876 -10.74530 -10.71570 -10.64679 -10.58057 -10.42762 -10.31089 -10.16623 -10.03485 -9.84993 -9.30533 -8.88926 -8.45552 -7.47124 -7.07536 -6.02579 -4.07390 3.31490 3.36129 3.38791 4.39413 4.79071 4.84531 4.95592 5.02675 5.17520 5.31634 5.59370 5.72431 5.75067 5.82848 5.83462 5.89515 5.94038 5.98639 6.02886 6.08267 6.09819 6.14143 6.20315 6.31075 6.37633 6.43298 6.46479 6.54966 6.59974 6.67814 6.78185 6.87060 6.91696 7.04568 7.40425 7.59521 7.78192 7.94857 8.02500 8.18822 8.35355 8.64858 9.00589 9.57802 11.04051 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.008696 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.586356 B = 3219.108146 C = 4698.462907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.534 5.534 6 C 0.077 3.923 7 C -0.096 4.096 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.120 4.120 12 C 0.224 3.776 13 H 0.007 0.993 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.068 3.932 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.015 0.985 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 10.887 1.475 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.067 4.067 4 C -0.074 4.074 5 N -0.259 5.259 6 C -0.051 4.051 7 C -0.115 4.115 8 C -0.140 4.140 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.158 4.158 12 C 0.117 3.883 13 H 0.024 0.976 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.059 4.059 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.351 10.679 1.509 11.294 hybrid contribution 0.205 -0.601 -0.714 0.956 sum 3.556 10.078 0.794 10.716 Atomic orbital electron populations 1.22237 0.89224 1.01455 0.98836 1.62326 1.06235 1.12668 1.46284 1.22049 0.95191 0.90437 0.99030 1.22110 0.94065 0.98024 0.93193 1.62252 1.06310 1.17572 1.39762 1.22044 0.88625 0.93366 1.01063 1.21945 0.94132 0.97032 0.98366 1.22256 0.96383 0.97288 0.98085 1.22557 0.95752 0.97905 1.00371 1.22329 0.97410 0.98103 0.98180 1.22172 0.95785 1.00298 0.97550 1.19229 0.90206 0.82384 0.96456 0.97551 1.21096 1.28031 0.95694 1.09682 0.91809 1.24960 0.95158 0.97489 0.96505 1.69875 1.34340 1.12313 1.36385 0.86593 0.79249 0.78725 0.83051 1.20286 1.21341 1.20254 1.22477 0.97487 0.98506 0.87410 0.91791 0.92873 0.96709 0.92263 0.95204 0.95580 0.91586 0.96255 0.90064 0.91640 0.90894 0.92242 0.92284 0.92219 0.92521 0.91765 0.92541 0.91690 0.92820 0.96696 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 60.06 0.58 1.13 16 2 N -0.55 -11.67 4.97 -242.75 -1.21 -12.88 16 3 C 0.06 1.15 5.62 -3.76 -0.02 1.13 16 4 C 0.05 1.04 5.14 -3.77 -0.02 1.02 16 5 N -0.53 -11.49 4.37 -227.88 -1.00 -12.49 16 6 C 0.08 1.51 3.75 -3.82 -0.01 1.49 16 7 C -0.10 -1.49 2.45 -89.50 -0.22 -1.71 16 8 C -0.10 -1.52 6.12 -25.03 -0.15 -1.68 16 9 C -0.13 -1.58 6.91 -24.70 -0.17 -1.75 16 10 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 11 C -0.12 -1.62 6.46 -25.61 -0.17 -1.78 16 12 C 0.22 5.70 1.94 -68.81 -0.13 5.56 16 13 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 14 C -0.51 -13.70 7.97 -34.44 -0.27 -13.97 16 15 H 0.06 1.72 6.45 -52.49 -0.34 1.38 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.18 11.34 55.43 0.63 -24.55 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.68 4.66 -3.77 -0.02 1.67 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.10 5.94 -51.93 -0.31 0.79 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.72 6.37 -51.93 -0.33 1.39 16 32 H 0.07 1.00 6.09 -51.93 -0.32 0.68 16 33 H 0.07 1.22 7.81 -51.93 -0.41 0.82 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.11 2.89 6.12 -51.93 -0.32 2.57 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -27.81 321.14 -10.52 -38.34 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.89 Total: -0.42 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.88 Total: -8.98 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -1.57 Total: -49.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.81 -10.52 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.329 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds