Wall clock time and date at job start Mon Mar 30 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46964 * 110.99639 * 2 1 4 4 C 1.53056 * 109.36121 * 176.81173 * 3 2 1 5 5 N 1.46954 * 109.36345 * 58.40061 * 4 3 2 6 6 C 1.46906 * 110.99891 * 176.80813 * 5 4 3 7 7 C 1.52999 * 109.47221 * 307.76526 * 6 5 4 8 8 C 1.54262 * 110.03087 * 295.33478 * 7 6 5 9 9 C 1.54967 * 104.16143 * 217.13909 * 8 7 6 10 10 C 1.54891 * 102.77601 * 37.88478 * 9 8 7 11 11 C 1.53875 * 110.03019 * 178.11868 * 7 6 5 12 12 C 1.46956 * 110.88441 * 300.67845 * 5 4 3 13 13 H 1.08998 * 109.48526 * 299.35606 * 12 5 4 14 14 C 1.50693 * 109.49215 * 179.29130 * 12 5 4 15 15 H 1.07998 * 120.00152 * 0.10360 * 14 12 5 16 16 C 1.37882 * 120.00008 * 180.10885 * 14 12 5 17 17 N 1.31512 * 119.99781 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99950 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47134 * 59.99983 * 18 16 14 20 20 H 1.48502 * 109.46997 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47102 * 299.99714 * 18 16 14 22 22 C 1.46957 * 111.00279 * 236.19989 * 2 1 3 23 23 H 1.09004 * 109.47259 * 183.80378 * 1 2 3 24 24 H 1.09005 * 109.47524 * 303.80049 * 1 2 3 25 25 H 1.09003 * 109.47418 * 63.80140 * 1 2 3 26 26 H 1.08992 * 109.49324 * 56.84637 * 3 2 1 27 27 H 1.08998 * 109.48758 * 296.77728 * 3 2 1 28 28 H 1.08996 * 109.48835 * 298.42999 * 4 3 2 29 29 H 1.09002 * 109.50360 * 178.37799 * 4 3 2 30 30 H 1.09000 * 109.46901 * 67.76382 * 6 5 4 31 31 H 1.09005 * 109.47007 * 187.76099 * 6 5 4 32 32 H 1.08997 * 110.01890 * 56.72229 * 7 6 5 33 33 H 1.09001 * 110.49129 * 335.78285 * 8 7 6 34 34 H 1.09000 * 110.48939 * 98.42459 * 8 7 6 35 35 H 1.09004 * 110.71850 * 279.57199 * 9 8 7 36 36 H 1.08999 * 110.92477 * 156.29458 * 9 8 7 37 37 H 1.09003 * 110.48292 * 203.40605 * 10 9 8 38 38 H 1.08995 * 110.59331 * 80.82426 * 10 9 8 39 39 H 1.08998 * 110.02671 * 238.56711 * 11 7 6 40 40 H 1.08994 * 110.03525 * 359.97438 * 11 7 6 41 41 H 0.97005 * 119.99550 * 179.97438 * 17 16 14 42 42 H 1.09008 * 109.48681 * 63.21739 * 22 2 1 43 43 H 1.08996 * 109.48959 * 303.15664 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3721 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0500 0.5660 -1.0598 6 6 5.5191 0.5661 -1.0598 7 6 6.0290 2.0051 -0.9601 8 6 5.6204 2.7989 -2.2181 9 6 6.8336 3.7226 -2.4943 10 6 8.0403 2.8175 -2.1426 11 6 7.5669 2.0171 -0.9117 12 6 3.5234 -0.8060 -1.0598 13 1 3.8253 -1.3113 -0.1425 14 6 4.0686 -1.5538 -2.2491 15 1 4.7406 -1.0603 -2.9356 16 6 3.7095 -2.8681 -2.4609 17 7 2.8915 -3.4691 -1.6247 18 14 4.3848 -3.7948 -3.9355 19 1 5.8671 -3.8361 -3.8578 20 1 3.8500 -5.1802 -3.9368 21 1 3.9736 -3.1048 -5.1845 22 6 1.9957 -0.7632 -1.1401 23 1 -0.3634 -1.0254 0.0682 24 1 -0.3634 0.5717 0.8540 25 1 -0.3634 0.4537 -0.9221 26 1 1.6013 1.9129 0.8602 27 1 1.6936 1.8774 -0.9174 28 1 3.8253 0.8481 1.0106 29 1 3.9180 2.3449 0.0514 30 1 5.8824 -0.0080 -0.2075 31 1 5.8824 0.1149 -1.9832 32 1 5.6236 2.4837 -0.0687 33 1 5.4559 2.1242 -3.0583 34 1 4.7261 3.3905 -2.0222 35 1 6.8063 4.5990 -1.8466 36 1 6.8660 4.0197 -3.5425 37 1 8.9112 3.4232 -1.8921 38 1 8.2693 2.1455 -2.9696 39 1 7.9079 2.5023 0.0028 40 1 7.9500 0.9978 -0.9588 41 1 2.6386 -4.3936 -1.7739 42 1 1.6937 -0.2820 -2.0704 43 1 1.6014 -1.7789 -1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:42 Heat of formation + Delta-G solvation = -18.715798 kcal Electronic energy + Delta-G solvation = -20028.037336 eV Core-core repulsion = 17299.611454 eV Total energy + Delta-G solvation = -2728.425882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45009 -38.79434 -36.09023 -34.92908 -31.53644 -31.15865 -29.45791 -28.34578 -27.24894 -25.35099 -23.80593 -22.98949 -21.45488 -20.55089 -20.07980 -18.50198 -17.32676 -16.63866 -16.22818 -15.89465 -15.79983 -15.40641 -15.32397 -15.03110 -14.71041 -14.12579 -14.08113 -13.89772 -13.08176 -12.95419 -12.75004 -12.70039 -12.57124 -12.32434 -12.10619 -11.97319 -11.91343 -11.87378 -11.76007 -11.68552 -11.41563 -11.32581 -10.87320 -10.85063 -10.54097 -9.16562 -8.89326 -8.13470 -6.26086 1.40384 1.42021 1.49801 2.39920 3.07907 3.26119 3.36001 3.84604 3.85891 3.92470 4.21185 4.31733 4.40236 4.43781 4.56321 4.59652 4.63694 4.67377 4.71156 4.77450 4.82395 4.87415 4.94054 4.95936 4.97936 5.04777 5.10226 5.12668 5.16722 5.23233 5.31567 5.44176 5.50647 5.55835 5.61640 5.65099 5.69873 6.10125 6.25737 6.31321 6.50748 6.76873 6.89770 7.43286 8.92246 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.008696 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.586356 B = 3219.108146 C = 4698.462907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.567 5.567 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.082 3.918 7 C -0.088 4.088 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.119 4.119 12 C 0.231 3.769 13 H -0.041 1.041 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.086 3.914 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.020 0.980 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.013 0.987 29 H 0.098 0.902 30 H -0.001 1.001 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.263 0.737 42 H -0.002 1.002 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 13.152 1.455 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.292 5.292 3 C -0.066 4.066 4 C -0.074 4.074 5 N -0.261 5.261 6 C -0.046 4.046 7 C -0.107 4.107 8 C -0.140 4.140 9 C -0.157 4.157 10 C -0.158 4.158 11 C -0.157 4.157 12 C 0.123 3.877 13 H -0.023 1.023 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.042 4.042 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.038 0.962 26 H 0.114 0.886 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.116 0.884 30 H 0.017 0.983 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.880 12.969 1.494 13.619 hybrid contribution 0.021 -1.293 -0.648 1.446 sum 3.900 11.676 0.847 12.339 Atomic orbital electron populations 1.22297 0.86952 1.01775 1.00544 1.62258 1.08473 1.14134 1.44309 1.22169 0.94708 0.89134 1.00594 1.22248 0.94736 0.98933 0.91455 1.62225 1.07446 1.15263 1.41192 1.22011 0.87559 0.96147 0.98859 1.21896 0.95730 0.93880 0.99195 1.22208 0.97957 0.97279 0.96577 1.22521 0.93932 0.97752 1.01480 1.22333 0.98290 0.98039 0.97116 1.22177 0.93982 1.00222 0.99362 1.18967 0.91017 0.84072 0.93617 1.02335 1.21346 1.28179 0.96414 1.10156 0.92334 1.25740 0.95364 0.98307 0.99133 1.70019 1.35209 1.12490 1.37909 0.85596 0.78749 0.77469 0.79750 1.19672 1.20784 1.19656 1.22026 0.96830 0.97323 0.88016 0.92568 0.89504 0.96186 0.88626 0.95204 0.96850 0.88357 0.98289 0.92484 0.90666 0.93573 0.92018 0.90441 0.91257 0.90143 0.92532 0.90583 0.92999 0.92821 0.98424 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.60 127.69 1.23 2.34 16 2 N -0.57 -23.95 4.97 -921.92 -4.58 -28.53 16 3 C 0.06 2.21 5.62 86.31 0.49 2.69 16 4 C 0.05 2.02 5.14 86.31 0.44 2.47 16 5 N -0.54 -23.63 4.37 -874.88 -3.82 -27.45 16 6 C 0.08 3.31 3.75 86.30 0.32 3.64 16 7 C -0.09 -2.64 2.45 -10.07 -0.02 -2.67 16 8 C -0.10 -2.90 6.12 31.69 0.19 -2.70 16 9 C -0.12 -2.58 6.91 31.91 0.22 -2.36 16 10 C -0.12 -2.62 6.83 31.67 0.22 -2.40 16 11 C -0.12 -3.02 6.46 31.32 0.20 -2.81 16 12 C 0.23 12.31 1.94 44.17 0.09 12.39 16 13 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 14 C -0.52 -29.48 7.97 25.60 0.20 -29.28 16 15 H 0.06 3.29 6.45 -2.91 -0.02 3.27 16 16 C 0.01 0.77 5.30 84.66 0.45 1.22 16 17 N -0.92 -53.80 11.34 21.45 0.24 -53.56 16 18 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C 0.09 4.41 4.66 86.31 0.40 4.81 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 2.39 8.13 -2.38 -0.02 2.37 16 25 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 3.01 5.94 -2.39 -0.01 3.00 16 30 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 2.54 6.37 -2.38 -0.02 2.52 16 32 H 0.08 2.11 6.09 -2.39 -0.01 2.10 16 33 H 0.05 1.55 7.81 -2.39 -0.02 1.53 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.44 7.67 -2.39 -0.02 1.42 16 41 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 42 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.08 4.31 6.12 -2.39 -0.01 4.29 16 Total: -1.00 -62.85 321.14 -0.76 -63.61 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.94 Total: 12.23 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.43 Total: -12.65 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -8.16 Total: -109.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -62.85 -0.76 -63.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds