Wall clock time and date at job start Mon Mar 30 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46955 * 111.00267 * 2 1 4 4 C 1.53047 * 109.36697 * 183.18877 * 3 2 1 5 5 N 1.46958 * 109.36546 * 301.60033 * 4 3 2 6 6 C 1.46900 * 111.00107 * 183.18880 * 5 4 3 7 7 C 1.52994 * 109.47048 * 52.26864 * 6 5 4 8 8 C 1.54892 * 110.60253 * 66.94036 * 7 6 5 9 9 C 1.54883 * 102.75110 * 156.67360 * 8 7 6 10 10 C 1.54266 * 104.19826 * 322.05640 * 9 8 7 11 11 C 1.53878 * 106.59693 * 23.61281 * 10 9 8 12 12 C 1.46955 * 110.87989 * 59.31715 * 5 4 3 13 13 H 1.09001 * 109.49169 * 60.65259 * 12 5 4 14 14 C 1.50699 * 109.48673 * 180.71490 * 12 5 4 15 15 H 1.08002 * 119.99993 * 0.02562 * 14 12 5 16 16 C 1.37880 * 120.00193 * 179.97438 * 14 12 5 17 17 N 1.31518 * 119.99637 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00210 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47136 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47154 * 120.00064 * 18 16 14 21 21 H 1.48497 * 109.47290 * 240.00212 * 18 16 14 22 22 C 1.46958 * 111.00107 * 123.80155 * 2 1 3 23 23 H 1.09008 * 109.47067 * 296.20062 * 1 2 3 24 24 H 1.09001 * 109.47197 * 56.20254 * 1 2 3 25 25 H 1.08998 * 109.47288 * 176.20445 * 1 2 3 26 26 H 1.09005 * 109.48433 * 303.15882 * 3 2 1 27 27 H 1.09001 * 109.48761 * 63.19488 * 3 2 1 28 28 H 1.08999 * 109.48888 * 181.62903 * 4 3 2 29 29 H 1.08999 * 109.48679 * 61.56341 * 4 3 2 30 30 H 1.09003 * 109.46742 * 292.26994 * 6 5 4 31 31 H 1.08993 * 109.47044 * 172.27357 * 6 5 4 32 32 H 1.09004 * 110.43890 * 304.31739 * 7 6 5 33 33 H 1.09004 * 110.75146 * 274.99491 * 8 7 6 34 34 H 1.09004 * 110.75472 * 38.35649 * 8 7 6 35 35 H 1.09003 * 110.48365 * 203.37747 * 9 8 7 36 36 H 1.09001 * 110.48808 * 80.73706 * 9 8 7 37 37 H 1.09001 * 110.03265 * 264.32908 * 10 9 8 38 38 H 1.08991 * 110.03104 * 142.89660 * 10 9 8 39 39 H 1.08994 * 110.02919 * 240.71460 * 11 10 9 40 40 H 1.08998 * 110.07477 * 119.30595 * 11 10 9 41 41 H 0.97002 * 119.99917 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49083 * 56.83696 * 22 2 1 43 43 H 1.09005 * 109.50282 * 296.78890 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0597 6 6 5.5191 0.5658 1.0597 7 6 6.0291 2.0048 0.9609 8 6 5.6754 2.7978 2.2436 9 6 6.7292 3.9328 2.2454 10 6 8.0161 3.2551 1.7310 11 6 7.5709 2.0293 0.9142 12 6 3.5234 -0.8061 1.0597 13 1 3.8253 -1.3116 0.1424 14 6 4.0686 -1.5539 2.2491 15 1 4.7390 -1.0598 2.9367 16 6 3.7108 -2.8687 2.4601 17 7 2.8933 -3.4700 1.6235 18 14 4.3871 -3.7958 3.9339 19 1 5.2781 -2.9010 4.7153 20 1 3.2631 -4.2475 4.7930 21 1 5.1573 -4.9759 3.4655 22 6 1.9957 -0.7632 1.1401 23 1 -0.3634 0.4538 0.9221 24 1 -0.3633 0.5716 -0.8540 25 1 -0.3634 -1.0254 -0.0680 26 1 1.6013 1.9128 -0.8603 27 1 1.6934 1.8775 0.9172 28 1 3.9178 2.3448 -0.0513 29 1 3.8253 0.8478 -1.0106 30 1 5.8824 -0.0078 0.2070 31 1 5.8824 0.1141 1.9827 32 1 5.6131 2.4966 0.0815 33 1 4.6670 3.2068 2.1790 34 1 5.7826 2.1696 3.1279 35 1 6.8768 4.3146 3.2556 36 1 6.4262 4.7358 1.5735 37 1 8.6335 2.9393 2.5719 38 1 8.5729 3.9444 1.0964 39 1 7.9724 1.1187 1.3587 40 1 7.9118 2.1228 -0.1169 41 1 2.6418 -4.3950 1.7717 42 1 1.6012 -1.7790 1.1111 43 1 1.6938 -0.2824 2.0706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:45 Heat of formation + Delta-G solvation = -1.438567 kcal Electronic energy + Delta-G solvation = -19989.048421 eV Core-core repulsion = 17261.371736 eV Total energy + Delta-G solvation = -2727.676685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.84780 -37.43575 -34.49279 -32.93807 -29.84279 -29.65468 -28.37033 -26.86610 -25.23453 -23.81665 -22.19450 -21.28290 -20.17991 -19.18121 -18.55839 -16.48056 -15.77245 -15.04094 -14.81784 -14.32873 -14.14695 -13.93124 -13.50564 -13.42454 -13.21567 -12.94697 -12.67401 -12.14958 -11.41772 -11.33923 -11.22094 -10.98418 -10.97609 -10.74034 -10.71121 -10.59773 -10.55741 -10.37485 -10.31180 -10.13953 -10.05059 -9.86271 -9.33247 -8.87465 -8.46400 -7.47186 -7.07397 -6.03060 -4.07657 3.28688 3.36912 3.41102 4.39336 4.77650 4.84310 4.95203 4.98986 5.17570 5.31279 5.57787 5.70907 5.75108 5.82181 5.83277 5.87748 5.92364 5.98401 6.01712 6.08541 6.09801 6.13522 6.19010 6.30443 6.37598 6.42340 6.45304 6.57232 6.60169 6.65063 6.74554 6.86894 6.90956 7.04293 7.40226 7.59341 7.78480 7.94821 8.02295 8.18650 8.35163 8.64658 9.01008 9.57696 11.03700 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.008403 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.087595 B = 3331.242851 C = 4774.541587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.077 3.923 7 C -0.095 4.095 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.122 4.122 11 C -0.120 4.120 12 C 0.223 3.777 13 H 0.007 0.993 14 C -0.505 4.505 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.068 3.932 23 H 0.014 0.986 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.020 0.980 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.261 0.739 42 H 0.106 0.894 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 11.099 -1.661 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.067 4.067 4 C -0.074 4.074 5 N -0.259 5.259 6 C -0.051 4.051 7 C -0.114 4.114 8 C -0.140 4.140 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.159 4.159 12 C 0.116 3.884 13 H 0.025 0.975 14 C -0.544 4.544 15 H 0.083 0.917 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.059 4.059 23 H 0.033 0.967 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.315 10.904 -1.686 11.521 hybrid contribution 0.217 -0.613 0.715 0.967 sum 3.532 10.291 -0.971 10.923 Atomic orbital electron populations 1.22238 0.89220 1.01458 0.98838 1.62325 1.06237 1.12675 1.46278 1.22049 0.95190 0.90434 0.99035 1.22115 0.94067 0.98037 0.93201 1.62255 1.06275 1.17573 1.39756 1.21959 0.88644 0.93364 1.01103 1.22168 0.94060 0.96942 0.98234 1.22370 0.97895 0.95801 0.97983 1.22409 0.95765 0.98203 1.00199 1.22105 0.97538 0.97077 0.99249 1.22169 0.96102 0.98112 0.99486 1.19247 0.90220 0.82407 0.96498 0.97522 1.21179 1.27971 0.95626 1.09574 0.91683 1.24965 0.95164 0.97520 0.96519 1.69897 1.34490 1.12157 1.36375 0.86481 0.78812 0.79722 0.82659 1.19721 1.21059 1.21100 1.22474 0.97473 0.98504 0.87416 0.96706 0.92869 0.91791 0.92261 0.95207 0.91561 0.95564 0.96204 0.90052 0.91323 0.91670 0.91300 0.92324 0.92308 0.92250 0.92617 0.91659 0.92505 0.92937 0.87575 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 60.06 0.58 1.13 16 2 N -0.55 -11.66 4.97 -242.75 -1.21 -12.86 16 3 C 0.06 1.15 5.62 -3.77 -0.02 1.13 16 4 C 0.05 1.04 5.14 -3.77 -0.02 1.02 16 5 N -0.53 -11.47 4.44 -227.89 -1.01 -12.49 16 6 C 0.08 1.51 3.99 -3.83 -0.02 1.49 16 7 C -0.10 -1.47 2.40 -88.96 -0.21 -1.69 16 8 C -0.10 -1.52 6.16 -24.74 -0.15 -1.67 16 9 C -0.13 -1.56 6.83 -25.08 -0.17 -1.73 16 10 C -0.12 -1.44 6.80 -25.61 -0.17 -1.62 16 11 C -0.12 -1.62 6.37 -25.61 -0.16 -1.79 16 12 C 0.22 5.67 1.94 -68.81 -0.13 5.54 16 13 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 14 C -0.50 -13.65 7.97 -34.44 -0.27 -13.93 16 15 H 0.07 1.76 6.46 -52.49 -0.34 1.42 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.18 11.34 55.43 0.63 -24.55 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.07 1.69 4.66 -3.77 -0.02 1.67 16 23 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 24 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.10 5.92 -51.93 -0.31 0.79 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.72 6.38 -51.93 -0.33 1.39 16 32 H 0.07 1.05 6.06 -51.93 -0.31 0.73 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.91 7.84 -51.93 -0.41 0.51 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.11 2.89 6.12 -51.93 -0.32 2.57 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -27.86 321.63 -10.55 -38.41 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.91 Total: -0.58 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.87 Total: -8.90 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -1.59 Total: -49.90 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.86 -10.55 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.969 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds